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Richard Wilson

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Manfred Schartl; Steve Searle; Yingjia Shen; Jean-Nicolas Volff; Ronald B Walter; Richard K Wilson; Angel Amores; Angelo Bisazza; Jeffrey Boore; Ingo Braasch; Julian Catchen; Domitille Chalopin; Susan Fuerstenberg; Tzintzuni Garcia; Ladeana Hillier; Klaus-Peter Lesch; Patrick J Minx; John H Postlethwait; Wesley C Warren
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.
Jeffery M Klco; Tamara L Lamprecht; Petra Erdmann-Gilmore; Jasreet Hundal; Cheryl F Lichti; vincent magrini; Elaine R Mardis; Matthew R Meyer; Shawn M Sarkaria; David H Spencer; R Reid Townsend; Nobish Varghese; Jason Walker; Richard K Wilson; Todd Wylie; Timothy J Ley
Genomic impact of transient low-dose decitabine treatment on primary AML cells.
Estienne C Swart; Jessica L Wiggins; Richard K Wilson; Yi Zhou; Michael S Bowen; John R Bracht; Wei-Jen Chang; Xiao Chen; Thomas G Doak; Sean R Eddy; Robert S Fulton; Aaron D Goldman; Kevin Haub; Glenn A Herrick; Thomas A Jones; Seolkyoung Jung; Jaspreet S Khurana; Amy Ly; vincent magrini; Elaine R Mardis; John Matese; Sean McGrath; Patrick J Minx; Mariusz Nowacki; Lance Parsons; Klaas Schotanus; Donna Storton; Nicholas A Stover; Laura F Landweber
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

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2013: Manfred Schartl; Steve Searle; Yingjia Shen; Jean-Nicolas Volff; Ronald B Walter; Richard K Wilson; Angel Amores; Angelo Bisazza; Jeffrey Boore; Ingo Braasch; Julian Catchen; Domitille Chalopin; Susan Fuerstenberg; Tzintzuni Garcia; Ladeana Hillier; Klaus-Peter Lesch; Patrick J Minx; John H Postlethwait; Wesley C Warren
The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits.
Nature genetics 2013;45(5):567-72.
2013: Jeffery M Klco; Tamara L Lamprecht; Petra Erdmann-Gilmore; Jasreet Hundal; Cheryl F Lichti; vincent magrini; Elaine R Mardis; Matthew R Meyer; Shawn M Sarkaria; David H Spencer; R Reid Townsend; Nobish Varghese; Jason Walker; Richard K Wilson; Todd Wylie; Timothy J Ley
Genomic impact of transient low-dose decitabine treatment on primary AML cells.
Blood 2013;121(9):1633-43.
2013: Estienne C Swart; Jessica L Wiggins; Richard K Wilson; Yi Zhou; Michael S Bowen; John R Bracht; Wei-Jen Chang; Xiao Chen; Thomas G Doak; Sean R Eddy; Robert S Fulton; Aaron D Goldman; Kevin Haub; Glenn A Herrick; Thomas A Jones; Seolkyoung Jung; Jaspreet S Khurana; Amy Ly; vincent magrini; Elaine R Mardis; John Matese; Sean McGrath; Patrick J Minx; Mariusz Nowacki; Lance Parsons; Klaas Schotanus; Donna Storton; Nicholas A Stover; Laura F Landweber
The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.
PLoS biology 2013;11(1):e1001473.
2012: Ramaswamy Govindan; Malachi Griffith; Krishna L Kanchi; Christopher A Maher; Elaine R Mardis; Sandra McDonald; David Ornitz; Janakiraman Subramanian; Jason Walker; John Wallis; Mark Watson; Ron Bose; Ken Chen; Nathan D Dees; Li Ding; David J Dooling; Lucinda Fulton; Robert Fulton; Donghai Xiong; Ming You; Richard K Wilson
Genomic landscape of non-small cell lung cancer in smokers and never-smokers.
Cell 2012;150(6):1121-34.
2012: Nathan D Dees; Matthew B Callaway; David Dooling; Cyriac Kandoth; Daniel C Koboldt; Elaine R Mardis; Thomas B Mooney; William Schierding; Michael Wendl; Richard K Wilson; Qunyuan Zhang; Li Ding
MuSiC: identifying mutational significance in cancer genomes.
Genome research 2012;22(8):1589-98.
2012: Ken Chen; Steven J Jones; Joelle M Kalicki-Veizer; Cyriac Kandoth; Timothy J Ley; Elaine R Mardis; Marco A Marra; Andrew J Mungall; Karen L Mungall; John W Wallis; John N Weinstein; Richard K Wilson; Li Ding
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.
Bioinformatics (Oxford, England) 2012;28(14):1923-4.
2012: Mario Ventura; Laura Vives; Richard K Wilson; Claudia R Catacchio; Tina Graves; Tomas Marques-Bonet; Saba Sajjadian; Peter H Sudmant; Evan E Eichler
The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2.
Genome research 2012;22(6):1036-49.
2012: Megan Y Dennis; Francesca Antonacci; Cynthia J Curry; Pieter J de Jong; Tina Graves; Holland Kotkiewicz; Maika Malig; Mikhail Nefedov; Xander Nuttle; Jill A Rosenfeld; Saba Sajjadian; Susan Shafer; Lisa G Shaffer; Peter H Sudmant; Richard K Wilson; Evan E Eichler
Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication.
Cell 2012;149(4):912-22.
2012: Margaret A Young; Ken Chen; Lisa L Cook; Ryan T Demeter; Li Ding; Xian Fan; Daniel R George; Joelle Kalicki-Veizer; David E Larson; Ling Lin; Elaine R Mardis; Christopher Miller; Kevin M Pawlik; Mark S Sands; Heather Schmidt; Chiao-Wang Sun; Gary W Swift; Tim M Townes; Michael C Wendl; Richard K Wilson; Timothy J Ley
Background mutations in parental cells account for most of the genetic heterogeneity of induced pluripotent stem cells.
Cell stem cell 2012;10(5):570-82.
2012: Andy Itsara; Robert B Jenkins; David A Koolen; Choli Lee; Kevin J Meyer; Karyn Meltz Steinberg; Joris Veltman; Lisenka E L M Vissers; Richard K Wilson; Michael C Zody; Carl Baker; Edwin Cuppen; Joep de Ligt; Tina A Graves; Evan E Eichler
Resolving the breakpoints of the 17q21.31 microdeletion syndrome with next-generation sequencing.
American journal of human genetics 2012;90(4):599-613.
2012: Matthew J Walter; Peter Westervelt; Richard K Wilson; Sarah Witowski; Rachel Abbott; Ken Chen; Li Ding; John F DiPersio; David Dooling; William Eades; Xian Fan; John L Frater; Robert Fulton; Marcus Grillot; Sharon Heath; Joelle Kalicki-Veizer; Daniel C Koboldt; David E Larson; Timothy J Ley; Daniel C Link; vincent magrini; Elaine R Mardis; Michael D McLellan; Michelle O'Laughlin; Heather Schmidt; Jin Shao; Dong Shen; Michael H Tomasson; Timothy A Graubert
Clonal architecture of secondary acute myeloid leukemia.
The New England journal of medicine 2012;366(12):1090-8.
2012: Nai-Kong V Cheung; James Dalton; Li Ding; James R Downing; Michael A Dyer; David Ellison; Sara Federico; Robert Fulton; Adriana Heguy; Charles Lu; Elaine R Mardis; Alberto S Pappo; Matthew Parker; Satish K Tickoo; Jianmin Wang; Richard K Wilson; Jianrong Wu; Jinghui Zhang; Armita Bahrami; Jared Becksfort; Catherine A Billups; Xiang Chen; Irene Y Cheung
Association of age at diagnosis and genetic mutations in patients with neuroblastoma.
JAMA : the journal of the American Medical Association 2012;307(10):1062-71.
2012: Jennifer F Hughes; Holland Kotkiewicz; Natalia Koutseva; Colin Kremitzki; Donna M Muzny; Lynne V Nazareth; Laura G Brown; Christian J Buhay; Ting-Jan Cho; Laura Courtney; Andrew Cree; Yan Ding; Shannon Dugan; Robert S Fulton; Richard A Gibbs; Tina Graves; Michael Holder; Tatyana Pyntikova; Steve Rozen; Hua Shen; Helen Skaletsky; Joelle Veizer; Donna Villasana; Qiaoyan Wang; Wesley C Warren; Richard K Wilson; David C Page
Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes.
Nature 2012;483(7387):82-6.
2012: Daniel C Koboldt; David E Larson; Ling Lin; Elaine R Mardis; Michael D McLellan; Christopher Miller; Dong Shen; Li Ding; Qunyuan Zhang; Richard K Wilson
VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.
Genome research 2012;22(3):568-76.
2012: David E Larson; Timothy J Ley; Elaine R Mardis; Richard K Wilson; Travis E Abbott; Ken Chen; David J Dooling; Christopher C Harris; Daniel C Koboldt; Li Ding
SomaticSniper: identification of somatic point mutations in whole genome sequencing data.
Bioinformatics (Oxford, England) 2012;28(3):311-7.
2012: Christopher A Maher; Richard K Wilson
Chromothripsis and human disease: piecing together the shattering process.
Cell 2012;148(1-2):29-32.
2011: Mario Ventura; Richard K Wilson; Can Alkan; Nicoletta Archidiacono; Carl Baker; Claudia R Catacchio; Lin Chen; Tina Graves; Fereydoun Hormozdiari; Jeffrey M Kidd; Choli Lee; Maika Malig; Tomas Marques-Bonet; Arcadi Navarro; Saba Sajjadian; Jay Shendure; Emily H Turner; Evan E Eichler
Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee.
Genome research 2011;21(10):1640-9.
2011: Matthew J Walter; Peter Westervelt; Richard K Wilson; J Baty; L Ding; John F DiPersio; Robert S Fulton; M Grillot; J Kalicki-Veizer; C Kandoth; Timothy J Ley; Elaine R Mardis; Michael D McLellan; M O'Laughlin; H Schmidt; J Shao; D Shen; Timothy A Graubert
Recurrent DNMT3A mutations in patients with myelodysplastic syndromes.
Leukemia 2011;25(7):1153-8.
2011: Michael Wendl; John W Wallis; Ling Lin; Cyriac Kandoth; Elaine R Mardis; Richard K Wilson; Li Ding
PathScan: a tool for discerning mutational significance in groups of putative cancer genes.
Bioinformatics (Oxford, England) 2011;27(12):1595-602.
2011: John S Welch; Peter Westervelt; Li Ding; David E Larson; Jeffery M Klco; Shashikant Kulkarni; John Wallis; Ken Chen; Jacqueline E Payton; Robert S Fulton; Joelle Veizer; Heather Schmidt; Tammi L Vickery; Sharon Heath; Mark A Watson; Michael H Tomasson; Daniel C Link; Timothy A Graubert; John F DiPersio; Elaine R Mardis; Timothy J Ley; Richard K Wilson
Use of whole-genome sequencing to diagnose a cryptic fusion oncogene.
JAMA : the journal of the American Medical Association 2011;305(15):1577-84.
2011: Liang Ye; George M Weinstock; Richard K Wilson; Lei Chen; David J Dooling; Kevin V Haub; LaDeana W Hillier; Devin P Locke; Elaine R Mardis; John C Martin; Jason R Miller; Patrick J Minx; Makedonka Mitreva; Nay Thane; Wesley C Warren
A vertebrate case study of the quality of assemblies derived from next-generation sequences.
Genome biology 2011;12(3):R31.
2010: Giridharan Ramsingh; Daniel C Koboldt; Maria Trissal; Katherine B Chiappinelli; Todd Wylie; Sunita Koul; Li-Wei Chang; Rakesh Nagarajan; Todd A Fehniger; Paul Goodfellow; vincent magrini; Richard K Wilson; Li Ding; Timothy J Ley; Elaine R Mardis; Daniel C Link
Complete characterization of the microRNAome in a patient with acute myeloid leukemia.
Blood 2010;116(24):5316-26.
2010: Jeffrey M Kidd; Tina Graves; Tera Newman-Eerkes; Robert Fulton; Hillary S Hayden; Maika Malig; Joelle Kallicki; Rajinder Kaul; Richard K Wilson; Evan E Eichler
A human genome structural variation sequencing resource reveals insights into mutational mechanisms.
Cell 2010;143(5):837-47.
2010: Francesca Antonacci; Jeffrey M Kidd; Tomas Marques-Bonet; Brian Teague; Mario Ventura; Santhosh Girirajan; Can Alkan; Catarina D Campbell; Laura Vives; Maika Malig; Jill A Rosenfeld; Blake C Ballif; Lisa Shaffer; Tina A Graves; Richard K Wilson; David C Schwartz; Evan E Eichler
A large and complex structural polymorphism at 16p12.1 underlies microdeletion disease risk.
Nature genetics 2010;42(9):745-50.
2010: Daniel C Koboldt; Li Ding; Elaine R Mardis; Richard K Wilson
Challenges of sequencing human genomes.
Briefings in bioinformatics 2010;11(5):484-98.
2010: Daniel W Bellott; Helen Skaletsky; Tatyana Pyntikova; Elaine R Mardis; Tina Graves; Colin Kremitzki; Laura G Brown; Steve Rozen; Wesley C Warren; Richard K Wilson; David C Page
Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition.
Nature 2010;466(7306):612-6.
2010: Jeffrey M Kidd; Nick Sampas; Francesca Antonacci; Tina Graves; Robert Fulton; Hillary S Hayden; Can Alkan; Maika Malig; Mario Ventura; Giuliana Giannuzzi; Joelle Kallicki; Paige Anderson; Anya Tsalenko; N Alice Yamada; Peter Tsang; Rajinder Kaul; Richard K Wilson; Laurakay Bruhn; Evan E Eichler
Characterization of missing human genome sequences and copy-number polymorphic insertions.
Nature methods 2010;7(5):365-71.
2010: Qunyuan Zhang; Li Ding; David E Larson; Daniel C Koboldt; Michael D McLellan; Ken Chen; Xiaoqi Shi; Aldi Kraja; Elaine R Mardis; Richard K Wilson; Ingrid B Borecki; Michael A Province
CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.
Bioinformatics (Oxford, England) 2010;26(4):464-9.
2010: Jennifer F Hughes; Helen Skaletsky; Tatyana Pyntikova; Tina Graves; Saskia K M van Daalen; Patrick J Minx; Robert S Fulton; Sean D McGrath; Devin P Locke; Cynthia Friedman; Barbara J Trask; Elaine R Mardis; Wesley C Warren; Sjoerd Repping; Steve Rozen; Richard K Wilson; David C Page
Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content.
Nature 2010;463(7280):536-9.
2010: Zhengyuan Wang; Sahar Abubucker; John Martin; Richard K Wilson; John Hawdon; Makedonka Mitreva
Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation.
BMC genomics 2010;11():307.
2010: Eva Kucerova; Sandra W Clifton; Xiao-Qin Xia; Fred Long; Steffen Porwollik; Lucinda Fulton; Catrina Fronick; Patrick Minx; Kim Kyung; Wesley Warren; Robert Fulton; Dongyan Feng; Aye Wollam; Neha Shah; Veena Bhonagiri; William E Nash; Kymberlie Hallsworth-Pepin; Richard K Wilson; Michael McClelland; Stephen J Forsythe
Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species.
PloS one 2010;5(3):e9556.
2009: Elaine R Mardis; Richard K Wilson
Cancer genome sequencing: a review.
Human molecular genetics 2009;18(R2):R163-8.
2009: Daniel C Koboldt; Ken Chen; Todd Wylie; David E Larson; Michael D McLellan; Elaine R Mardis; George M Weinstock; Richard K Wilson; Li Ding
VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
Bioinformatics (Oxford, England) 2009;25(17):2283-5.
2009: Matthew J Walter; Jacqueline E Payton; Rhonda E Ries; William D Shannon; Hrishikesh Deshmukh; Yu Zhao; Jack Baty; Sharon Heath; Peter Westervelt; Mark A Watson; Michael H Tomasson; Rakesh Nagarajan; Brian P O'Gara; Clara D Bloomfield; Krzysztof Mrózek; Rebecca R Selzer; Richmond Todd; Jacob Kitzman; Joel Geoghegan; Peggy S Eis; Rachel Maupin; Robert S Fulton; Michael D McLellan; Richard K Wilson; Elaine R Mardis; Daniel C Link; Timothy A Graubert; John F DiPersio; Timothy J Ley
Acquired copy number alterations in adult acute myeloid leukemia genomes.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(31):12950-5.
2009: Tomas Marques-Bonet; Jeffrey M Kidd; ventura Mario; Tina Graves; Ze Cheng; LaDeana W Hillier; Zhaoshi Jiang; Carl Baker; Ray Malfavon-Borja; Lucinda A Fulton; Can Alkan; Gozde Aksay; Santhosh Girirajan; Priscillia Siswara; Lin Chen; Maria Francesca Cardone; Arcadi Navarro; Elaine R Mardis; Richard K Wilson; Evan E Eichler
A burst of segmental duplications in the genome of the African great ape ancestor.
Nature 2009;457(7231):877-81.
2009: Michael C Wendl; Richard K Wilson
The theory of discovering rare variants via DNA sequencing.
BMC genomics 2009;10():485.
2009: Michael C Wendl; Richard K Wilson
Statistical aspects of discerning indel-type structural variation via DNA sequence alignment.
BMC genomics 2009;10():359.
2008: Jeffrey M Kidd; Ze Cheng; Tina Graves; Bob Fulton; Richard K Wilson; Evan E Eichler
Haplotype sorting using human fosmid clone end-sequence pairs.
Genome research 2008;18(12):2016-23.
2008: Eric A Welsh; Michelle Liberton; Jana Stöckel; Thomas Loh; Thanura Elvitigala; Chunyan Wang; Aye Wollam; Robert S Fulton; Sandra W Clifton; Jon M Jacobs; Aurora Rajeev; Bijoy K Ghosh; Louis A Sherman; Richard D Smith; Richard K Wilson; Himadri B Pakrasi
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(39):15094-9.
2008: Jenifer L Marks; Yixuan Gong; Dhananjay Chitale; Ben Golas; Michael D McLellan; Yumi Kasai; Li Ding; Elaine R Mardis; Richard K Wilson; David B Solit; Ross Levine; Kathrin Michel; Roman K Thomas; Valerie W Rusch; Marc Ladanyi; William Pao
Novel MEK1 mutation identified by mutational analysis of epidermal growth factor receptor signaling pathway genes in lung adenocarcinoma.
Cancer research 2008;68(14):5524-8.
2008: Zhifu Xiang; Zhifu Xiang; Richard Walgren; Yu Zhao; Yumi Kasai; Tracie Miner; Rhonda E Ries; Olga Lubman; daved fremont; Michael D McLellan; Jacqueline E Payton; Peter Westervelt; John F DiPersio; Daniel C Link; Matthew J Walter; Timothy A Graubert; Mark Watson; Jack Baty; Sharon Heath; William D Shannon; Rakesh Nagarajan; Clara D Bloomfield; Elaine R Mardis; Richard K Wilson; Timothy J Ley
Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia.
Blood 2008;111(9):4797-808.
2008: LaDeana W Hillier; Gabor T Marth; Aaron R Quinlan; David Dooling; Ginger Fewell; Derek Barnett; Paul Fox; Jarret I Glasscock; Matthew Hickenbotham; Weichun Huang; vincent magrini; Ryan J Richt; Sacha N Sander; Donald A Stewart; Michael Stromberg; Eric F Tsung; Todd Wylie; Tim Schedl; Richard K Wilson; Elaine R Mardis
Whole-genome sequencing and variant discovery in C. elegans.
Nature methods 2008;5(2):183-8.
2008: Sahar Abubucker; John Martin; Yong Yin; Lucinda Fulton; Shiaw-Pyng Yang; Kym Hallsworth-Pepin; J Spencer Johnston; John M Hawdon; James P McCarter; Richard K Wilson; Makedonka Mitreva
The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences.
Molecular and biochemical parasitology 2008;157(2):187-92.
2008: Yong Yin; John Martin; Sahar Abubucker; Alan L Scott; James P McCarter; Richard K Wilson; Douglas P Jasmer; Makedonka Mitreva
Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans.
PLoS neglected tropical diseases 2008;2(8):e269.
2008: Michael Wendl; Richard K Wilson
Aspects of coverage in medical DNA sequencing.
BMC bioinformatics 2008;9():239.
2007: Daniel C Link; Ghada Kunter; Yumi Kasai; Yu Zhao; Tracie Miner; Michael D McLellan; Rhonda E Ries; Deepak Kapur; Rakesh Nagarajan; David C Dale; Audrey Anna Bolyard; Laurence A Boxer; Karl Welte; Cornelia Zeidler; jean donadieu; Christine Bellanné-Chantelot; James W Vardiman; Michael A Caligiuri; Clara D Bloomfield; John F DiPersio; Michael H Tomasson; Timothy A Graubert; Peter Westervelt; Mark Watson; William D Shannon; Jack Baty; Elaine R Mardis; Richard K Wilson; Timothy J Ley
Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia.
Blood 2007;110(5):1648-55.
2007: Sol Katzman; Andrew D Kern; Gill Bejerano; Ginger Fewell; Lucinda Fulton; Richard K Wilson; Sofie R Salama; David Haussler
Human genome ultraconserved elements are ultraselected.
Science (New York, N.Y.) 2007;317(5840):915.
2007: Aaron Hamvas; Daniel J Wegner; Christopher S Carlson; Kelly R Bergmann; Michelle A Trusgnich; Lucinda Fulton; Yumi Kasai; Ping An; Elaine R Mardis; Richard K Wilson; F Sessions Cole
Comprehensive genetic variant discovery in the surfactant protein B gene.
Pediatric research 2007;62(2):170-5.
2007: Jian Xu; Michael A Mahowald; Ruth E Ley; Catherine A Lozupone; Micah Hamady; Eric C Martens; Bernard Henrissat; Pedro M Coutinho; Patrick Minx; Philippe Latreille; Holland Cordum; Andrew Van Brunt; Kyung Kim; Robert S Fulton; Lucinda Fulton; Sandra W Clifton; Richard K Wilson; Robin D Knight; Jeffrey I Gordon
Evolution of symbiotic bacteria in the distal human intestine.
PLoS biology 2007;5(7):e156.
2007: Buck S Samuel; Elizabeth E Hansen; Jill K Manchester; Pedro M Coutinho; Bernard Henrissat; Robert S Fulton; Philippe Latreille; Kung Kim; Richard K Wilson; Jeffrey I Gordon
Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(25):10643-8.
2007: Ken Chen; Michael D McLellan; Li Ding; Michael Wendl; Yumi Kasai; Richard K Wilson; Elaine R Mardis
PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.
Genome research 2007;17(5):659-66.
2007: Roberta Roberto; Oronzo Capozzi; Richard K Wilson; Elaine R Mardis; Mariana Lomiento; Eray Tuzun; Ze Cheng; Alan R Mootnick; Nicoletta Archidiacono; Mariano Rocchi; Evan E Eichler
Molecular refinement of gibbon genome rearrangements.
Genome research 2007;17(2):249-57.
2007: Michael Wendl; Scott Smith; Craig S Pohl; David J Dooling; Asif T Chinwalla; Kevin Crouse; Todd Hepler; Shin Leong; Lynn Carmichael; Mike Nhan; Benjamin J Oberkfell; Elaine R Mardis; LaDeana W Hillier; Richard K Wilson
Design and implementation of a generalized laboratory data model.
BMC bioinformatics 2007;8():362.
2007: Jenifer L Marks; Michael D McLellan; Maureen F Zakowski; Alex E Lash; Yumi Kasai; Stephen Broderick; Inderpal S Sarkaria; Duykhanh Pham; Bhuvanesh Singh; Tracie L Miner; Ginger A Fewell; Lucinda L Fulton; Elaine R Mardis; Richard K Wilson; Mark G Kris; Valerie W Rusch; Harold Varmus; William Pao
Mutational analysis of EGFR and related signaling pathway genes in lung adenocarcinomas identifies a novel somatic kinase domain mutation in FGFR4.
PloS one 2007;2(5):e426.
2006: Jennifer F Hughes; Helen Skaletsky; Steve Rozen; Richard K Wilson; David C Page
Has the chimpanzee Y chromosome been sequenced?
Nature genetics 2006;38(8):853-4; author reply 854-5.
2006: Rene Warren; Dmitry Varabei; Darren Platt; Xiaoqiu Huang; David Messina; Shiaw-Pyng Yang; James W Kronstad; Martin I Krzywinski; Wesley C Warren; John W Wallis; LaDeana W Hillier; Asif T Chinwalla; Jacqueline E Schein; Asim S Siddiqui; Marco A Marra; Richard K Wilson; Steven J M Jones
Physical map-assisted whole-genome shotgun sequence assemblies.
Genome research 2006;16(6):768-75.
2006: Yong Yin; John Martin; James P McCarter; Sandra W Clifton; Richard K Wilson; Makedonka Mitreva
Identification and analysis of genes expressed in the adult filarial parasitic nematode Dirofilaria immitis.
International journal for parasitology 2006;36(7):829-39.
2006: Duykhanh Pham; Mark G Kris; Gregory J Riely; Inderpal S Sarkaria; Tiffani McDonough; Shaokun Chuai; Venkatraman E Seshan; Vincent A Miller; Marc Ladanyi; William Pao; Richard K Wilson; Bhuvanesh Singh; Valerie W Rusch
Use of cigarette-smoking history to estimate the likelihood of mutations in epidermal growth factor receptor gene exons 19 and 21 in lung adenocarcinomas.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2006;24(11):1700-4.
2006: Paul F Cliften; Robert S Fulton; Richard K Wilson; Mark Johnston
After the duplication: gene loss and adaptation in Saccharomyces genomes.
Genetics 2006;172(2):863-72.
2006: Xiaoqiu Huang; Shiaw-Pyng Yang; Asif T Chinwalla; LaDeana W Hillier; Patrick J Minx; Elaine R Mardis; Richard K Wilson
Application of a superword array in genome assembly.
Nucleic acids research 2006;34(1):201-5.
2005: Jennifer F Hughes; Helen Skaletsky; Tatyana Pyntikova; Patrick J Minx; Tina Graves; Steve Rozen; Richard K Wilson; David C Page
Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee.
Nature 2005;437(7055):100-3.
2005: Ze Cheng; ventura Mario; Xinwei She; Philipp Khaitovich; Tina Graves; Kazutoyo Osoegawa; Deanna Church; Pieter DeJong; Richard K Wilson; Svante Pääbo; Mariano Rocchi; Evan E Eichler
A genome-wide comparison of recent chimpanzee and human segmental duplications.
Nature 2005;437(7055):88-93.
2005: Matthew J Walter; John S Park; Rhonda E Ries; Steven K M Lau; Michael D McLellan; Sara Jaeger; Richard K Wilson; Elaine R Mardis; Timothy J Ley
Reduced PU.1 expression causes myeloid progenitor expansion and increased leukemia penetrance in mice expressing PML-RARalpha.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(35):12513-8.
2005: Adam Siepel; Gill Bejerano; Jan Skov Pedersen; Angie S Hinrichs; Minmei Hou; Kate Rosenbloom; Hiram Clawson; John Spieth; LaDeana W Hillier; Stephen Richards; George M Weinstock; Richard K Wilson; Richard A Gibbs; W James Kent; Webb Miller; David Haussler
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Genome research 2005;15(8):1034-50.
2005: Julie E Horvath; Cassy L Gulden; Rhea Vallente; Marla Y Eichler; ventura Mario; John D McPherson; Tina Graves; Richard K Wilson; Stuart Schwartz; Mariano Rocchi; Evan E Eichler
Punctuated duplication seeding events during the evolution of human chromosome 2p11.
Genome research 2005;15(7):914-27.
2005: Manpreet S Katari; Vivekanand Balija; Richard K Wilson; Robert A Martienssen; W Richard McCombie
Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana.
Genome research 2005;15(4):496-504.
2005: Susan K Flowers; Carla Easter; Andrea Holmes; Brian Cohen; April E Bednarski; Elaine R Mardis; Richard K Wilson; Sarah C R Elgin
Genome science: a video tour of the Washington University Genome Sequencing Center for high school and undergraduate students.
Cell biology education 2005;4(4):291-7.
2005: Makedonka Mitreva; James P McCarter; Prema Arasu; John M Hawdon; John Martin; Mike Dante; Todd Wylie; Jian Xu; Jason E Stajich; Wadim Kapulkin; Sandra W Clifton; Robert H Waterston; Richard K Wilson
Investigating hookworm genomes by comparative analysis of two Ancylostoma species.
BMC genomics 2005;6():58.
2005: Thomas Wicker; Jon S Robertson; Stefan R Schulze; F. Alex Feltus; vincent magrini; Jason A Morrison; Elaine R Mardis; Richard K Wilson; Daniel G Peterson; Andrew H Paterson; Robert Ivarie
The repetitive landscape of the chicken genome.
Genome research 2005;15(1):126-36.
2004: Li Ding; Aniko Sabo; Nicolas Berkowicz; Rekha R Meyer; Yoram Shotland; Mark R Johnson; Kymberlie H Pepin; Richard K Wilson; John Spieth
EAnnot: a genome annotation tool using experimental evidence.
Genome research 2004;14(12):2503-9.
2004: Jill R Woloszynek; Robert J Rothbaum; Amy S Rawls; Patrick J Minx; Richard K Wilson; Philip Mason; Monica Bessler; Daniel C Link
Mutations of the SBDS gene are present in most patients with Shwachman-Diamond syndrome.
Blood 2004;104(12):3588-90.
2004: Sandra W Clifton; Patrick J Minx; Christiane M-R Fauron; Michael Gibson; James O Allen; Hui Sun; Melissa Thompson; W Brad Barbazuk; Suman Kanuganti; Catherine Tayloe; Louis Meyer; Richard K Wilson; Kathleen J Newton
Sequence and comparative analysis of the maize NB mitochondrial genome.
Plant physiology 2004;136(3):3486-503.
2004: Terrence S Furey; Mark Diekhans; Yontao Lu; Tina Graves; Lachlan Oddy; Jennifer Randall-Maher; LaDeana W Hillier; Richard K Wilson; David Haussler
Analysis of human mRNAs with the reference genome sequence reveals potential errors, polymorphisms, and RNA editing.
Genome research 2004;14(10B):2034-40.
2004: Xinwei She; Julie E Horvath; Zhaoshi Jiang; Ge Liu; Terrence S Furey; Laurie A Christ; Royden Clark; Tina Graves; Cassy L Gulden; Can Alkan; Jeffrey A Bailey; Cenk Sahinalp; Mariano Rocchi; David Haussler; Richard K Wilson; Webb Miller; Stuart Schwartz; Evan E Eichler
The structure and evolution of centromeric transition regions within the human genome.
Nature 2004;430(7002):857-64.
2004: Todd Wylie; John C Martin; Mike Dante; Makedonka Mitreva; Sandra W Clifton; Asif T Chinwalla; Robert H Waterston; Richard K Wilson; James P McCarter
Nematode.net: a tool for navigating sequences from parasitic and free-living nematodes.
Nucleic acids research 2004;32(Database issue):D423-6.
2003: Timothy J Ley; Patrick J Minx; Matthew J Walter; Rhonda E Ries; Hui Sun; Michael D McLellan; John F DiPersio; Daniel C Link; Michael H Tomasson; Timothy A Graubert; howard mcleod; Hanna Khoury; Mark Watson; William D Shannon; Kathryn Trinkaus; Sharon Heath; James W Vardiman; Michael A Caligiuri; Clara D Bloomfield; Jeffrey D Milbrandt; Elaine R Mardis; Richard K Wilson
A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(24):14275-80.
2003: David Wang; Anatoly Urisman; Yu-Tsueng Liu; Michael Springer; Thomas G Ksiazek; Dean D Erdman; Elaine R Mardis; Matthew Hickenbotham; vincent magrini; James Eldred; J Phillipe Latreille; Richard K Wilson; Don Ganem; Joe L DeRisi
Viral discovery and sequence recovery using DNA microarrays.
PLoS biology 2003;1(2):E2.
2003: Steve Rozen; Helen Skaletsky; Janet D Marszalek; Patrick J Minx; Holland S Cordum; Robert H Waterston; Richard K Wilson; David C Page
Abundant gene conversion between arms of palindromes in human and ape Y chromosomes.
Nature 2003;423(6942):873-6.
2003: Richard K Wilson; Timothy J Ley; F Sessions Cole; J D Milbrandt; Sandra W Clifton; Lucinda Fulton; G Fewell; Patrick J Minx; Hui Sun; Michael D McLellan; C Pohl; Elaine R Mardis
Mutational profiling in the human genome.
Cold Spring Harbor symposia on quantitative biology 2003;68():23-9.
2003: Robert H Waterston; LaDeana W Hillier; Lucinda Fulton; Robert S Fulton; Tina Graves; Kymberlie H Pepin; Peer Bork; Mikita Suyama; David Torrents; Asif T Chinwalla; Elaine R Mardis; John D McPherson; Richard K Wilson
The human genome: genes, pseudogenes, and variation on chromosome 7.
Cold Spring Harbor symposia on quantitative biology 2003;68():13-22.
2002: Elaine R Mardis; John McPherson; Robert A Martienssen; Richard K Wilson; W Richard McCombie
What is finished, and why does it matter.
Genome research 2002;12(5):669-71.
2002: Lee Rowen; Janet Young; Brian Birditt; Amardeep Kaur; Anup Madan; Dana L Philipps; Shizhen Qin; Patrick J Minx; Richard K Wilson; Leroy Hood; Brenton R Graveley
Analysis of the human neurexin genes: alternative splicing and the generation of protein diversity.
Genomics 2002;79(4):587-97.
2001: Tomoko Kuroda-Kawaguchi; Helen Skaletsky; Laura G Brown; Patrick J Minx; Holland S Cordum; Robert H Waterston; Richard K Wilson; Sherman Silber; Robert D Oates; Steve Rozen; David C Page
The AZFc region of the Y chromosome features massive palindromes and uniform recurrent deletions in infertile men.
Nature genetics 2001;29(3):279-86.
2001: Michael McClelland; K E Sanderson; John Spieth; Sandra W Clifton; P Latreille; L Courtney; Steffen Porwollik; J Ali; Mike Dante; F Du; S Hou; D Layman; S Leonard; C Nguyen; K Scott; A Holmes; N Grewal; E Mulvaney; E Ryan; H Sun; Liliana Florea; Webb Miller; T Stoneking; M Nhan; Robert H Waterston; Richard K Wilson
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.
Nature 2001;413(6858):852-6.
2001: Michael Wendl; Marco A Marra; LaDeana W Hillier; Asif T Chinwalla; Richard K Wilson; Robert H Waterston
Theories and applications for sequencing randomly selected clones.
Genome research 2001;11(2):274-80.
2000: Michael McClelland; Liliana Florea; K Sanderson; Sandra W Clifton; J Parkhill; C Churcher; G Dougan; Richard K Wilson; Webb Miller
Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi.
Nucleic acids research 2000;28(24):4974-86.
2000: E T Stuebe; J Q Steward; Asif T Chinwalla; L L Cook; M Cook; B Fronick; K Miller; M K Mullen; D O'Brien; D A Panussis; C Pohl; J E Snider; J Strong; D Williams; Richard K Wilson; C Tibbetts; Elaine R Mardis
Modification of a commercially available DNA sequencer to increase sample throughput.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2000;19(2):101-6.
2000: Rachel E Ellsworth; DC Jamison; Jeffrey W Touchman; SL Chissoe; V V Braden Maduro; Gerald Bouffard; Nicole L Dietrich; Stephen Beckstrom-Sternberg; LM Iyer; LA Weintraub; M Cotton; L Courtney; J Edwards; R Maupin; Philip Ozersky; T Rohlfing; P Wohldmann; Tracie L Miner; K Kemp; J Kramer; Ian F Korf; Kymberlie H Pepin; L Antonacci-Fulton; Robert S Fulton; Patrick J Minx; L W Hillier; Richard K Wilson; Robert H Waterston; Webb Miller; Eric Green
Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(3):1172-7.
2000: R J Neuman; P C Huettner; L Li; Elaine R Mardis; B F Duffy; Richard K Wilson; Janet S Rader
Association between DQB1 and cervical cancer in patients with human papillomavirus and family controls.
Obstetrics and gynecology 2000;95(1):134-40.
1998: Michael McClelland; Richard K Wilson
Comparison of sample sequences of the Salmonella typhi genome to the sequence of the complete Escherichia coli K-12 genome.
Infection and immunity 1998;66(9):4305-12.
1998: D A Panussis; M W Cook; L L Rifkin; J E Snider; J T Strong; R M McGrane; Richard K Wilson; Elaine R Mardis
A pneumatic device for rapid loading of DNA sequencing gels.
Genome research 1998;8(5):543-8.
1997: Marco A Marra; Tamara Kucaba; Nicole L Dietrich; Eric Green; B Brownstein; Richard K Wilson; K M McDonald; LaDeana W Hillier; John D McPherson; Robert H Waterston
High throughput fingerprint analysis of large-insert clones.
Genome research 1997;7(11):1072-84.
1997: SL Chissoe; Marco A Marra; LaDeana W Hillier; R Brinkman; Richard K Wilson; Robert H Waterston
Representation of cloned genomic sequences in two sequencing vectors: correlation of DNA sequence and subclone distribution.
Nucleic acids research 1997;25(15):2960-6.
1997: Scott Devine; SL Chissoe; Yolanda Eby; Richard K Wilson; Jef Boeke
A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes.
Genome research 1997;7(5):551-63.
1996: Z Du; Richard K Wilson
Using the automated DNA sequencer.
Methods in molecular biology (Clifton, N.J.) 1996;58():425-39.
1995: Mark Vaudin; A Roopra; LaDeana W Hillier; R Brinkman; John E Sulston; Richard K Wilson; Robert H Waterston
The construction and analysis of M13 libraries prepared from YAC DNA.
Nucleic acids research 1995;23(4):670-4.
1995: R J Lye; Richard K Wilson; Robert H Waterston
Genomic structure of a cytoplasmic dynein heavy chain gene from the nematode Caenorhabditis elegans.
Cell motility and the cytoskeleton 1995;32(1):26-36.
1995: L L Fulton; LaDeana W Hillier; Richard K Wilson
Large-scale complementary DNA sequencing methods.
Methods in cell biology 1995;48():571-82.
1995: A Favello; LaDeana W Hillier; Richard K Wilson
Genomic DNA sequencing methods.
Methods in cell biology 1995;48():551-69.
1994: L L Fulton; Richard K Wilson
Variations on cycle sequencing.
BioTechniques 1994;17(2):298-301.
1993: Richard K Wilson
High-throughput purification of M13 templates for DNA sequencing.
BioTechniques 1993;15(3):414-6, 418-20, 422.
1993: Z Du; L Hood; Richard K Wilson
Automated fluorescent DNA sequencing of polymerase chain reaction products.
Methods in enzymology 1993;218():104-21.
1993: N Halloran; Z Du; Richard K Wilson
Sequencing reactions for the applied biosystems 373A Automated DNA Sequencer.
Methods in molecular biology (Clifton, N.J.) 1993;23():297-315.
1992: B F Koop; Richard K Wilson; Kai Wang; B Vernooij; D Zallwer; C L Kuo; D Seto; M Toda; Leroy Hood
Organization, structure, and function of 95 kb of DNA spanning the murine T-cell receptor C alpha/C delta region.
Genomics 1992;13(4):1209-30.
1992: Richard K Wilson; B F Koop; C Chen; N Halloran; R Sciammis; Leroy Hood
Nucleotide sequence analysis of 95 kb near the 3' end of the murine T-cell receptor alpha/delta chain locus: strategy and methodology.
Genomics 1992;13(4):1198-208.
1990: L A Schriefer; B K Gebauer; L Q Qui; Robert H Waterston; Richard K Wilson
Low pressure DNA shearing: a method for random DNA sequence analysis.
Nucleic acids research 1990;18(24):7455-6.
1990: B F Koop; Richard K Wilson; C Chen; N Halloran; R Sciammis; Leroy Hood; J W Lindelien
Sequencing reactions in microtiter plates.
BioTechniques 1990;9(1):32, 34-7.
1990: Richard K Wilson; C Chen; N Avdalovic; J Burns; Leroy Hood
Development of an automated procedure for fluorescent DNA sequencing.
Genomics 1990;6(4):626-34.
1990: Richard K Wilson; C Chen; Leroy Hood
Optimization of asymmetric polymerase chain reaction for rapid fluorescent DNA sequencing.
BioTechniques 1990;8(2):184-9.
1988: Richard K Wilson; A S Yuen; S M Clark; C Spence; P Arakelian; L E Hood
Automation of dideoxynucleotide DNA sequencing reactions using a robotic workstation.
BioTechniques 1988;6(8):776-7, 781-7.