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Rod Wing

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Genes & Molecular Sequences

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Bacterial Artificial Chromosomes

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Lyza G Maron; Miguel A Piñeros; Michael C Schatz; Rod A Wing; David Kudrna; Jurandir V Magalhaes; Patrice S Albert; James A Birchler; Peter J Bradbury; Edward S Buckler; Alison E Coluccio; Tatiana V Danilova; Claudia T Guimarães; Matias Kirst; Leon V Kochian
Aluminum tolerance in maize is associated with higher MATE1 gene copy number.
Marianyoly Ortiz; Leland S Pierson; Barry M Pryor; Carol Soderlund; Rod A Wing; Yeisoo Yu; Andrea Byrne; Antje Legatzki; Julia W Neilson; William M Nelson; Raina M Maier
Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.
Ruolin Yang; Rod A Wing; Mingming Xin; Mark A Beilstein; Hao Chen; Jane Grimwood; David E Jarvis; Jerry Jenkins; Chuang Ma; Thomas Mitchell-Olds; Simon Prochnik; Jeremy Schmutz; Karen S Schumaker; Shengqiang Shu; Xiangfeng Wang
The Reference Genome of the Halophytic Plant Eutrema salsugineum.

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All Publications

2013: Lyza G Maron; Miguel A Piñeros; Michael C Schatz; Rod A Wing; David Kudrna; Jurandir V Magalhaes; Patrice S Albert; James A Birchler; Peter J Bradbury; Edward S Buckler; Alison E Coluccio; Tatiana V Danilova; Claudia T Guimarães; Matias Kirst; Leon V Kochian
Aluminum tolerance in maize is associated with higher MATE1 gene copy number.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(13):5241-6.
2013: Marianyoly Ortiz; Leland S Pierson; Barry M Pryor; Carol Soderlund; Rod A Wing; Yeisoo Yu; Andrea Byrne; Antje Legatzki; Julia W Neilson; William M Nelson; Raina M Maier
Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.
Microbial ecology 2013;65(2):371-83.
2013: Ruolin Yang; Rod A Wing; Mingming Xin; Mark A Beilstein; Hao Chen; Jane Grimwood; David E Jarvis; Jerry Jenkins; Chuang Ma; Thomas Mitchell-Olds; Simon Prochnik; Jeremy Schmutz; Karen S Schumaker; Shengqiang Shu; Xiangfeng Wang
The Reference Genome of the Halophytic Plant Eutrema salsugineum.
Frontiers in plant science 2013;4():46.
2013: Hyun Jo Koo; Dave Kudrna; Xiaoqiang Ma; Eric T McDowell; Carol Soderlund; Rod A Wing; Zhengzhi Xie; Yeisoo Yu; Anne Descour; Kevin A Greer; Jeremy Kapteyn; Hyeran Kim; David R Gang
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
BMC plant biology 2013;13():27.
2012: Julia W Neilson; William M Nelson; Marianyoly Ortiz; Jay Quade; Carol Soderlund; Fei Tian; Rod A Wing; Julio L Betancourt; Michelle LaComb; Antje Legatzki; Raina M Maier
Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile.
Extremophiles : life under extreme conditions 2012;16(3):553-66.
2012: Lu Yang; Jinfeng Chen; Bo Li; Tieyan Liu; Jinfeng Shi; Yi Sui; Rod A Wing; Mingsheng Chen
Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes.
PloS one 2012;7(11):e50236.
2012: Thais Rezende e Silva Figueira; Marcio Jose da Silva; Dave Kudrna; Vagner Okura; Felipe Rodrigues da Silva; Jayson Talag; Rod A Wing; Jetty S S Ammiraju; Paulo Arruda
A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome.
BMC research notes 2012;5():185.
2011: J Jacquemin; Michèle Laudié; Rod A Wing; A Berger; C Chaparro; F Gavory; J L Goicoechea; Richard Cooke
Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species.
Molecular biology and evolution 2011;28(11):3139-50.
2011: Chuanzhu Fan; Cory D Hirsch; Jiming Jiang; Jason G Walling; Jianwei Zhang; Rod A Wing
Conservation and purifying selection of transcribed genes located in a rice centromere.
The Plant cell 2011;23(8):2821-30.
2011: Xiang Song; José L Goicoechea; Jetty S S Ammiraju; Meizhong Luo; Ruifeng He; Jinke Lin; So-Jeong Lee; Nicholas Sisneros; Tom Watts; Dave Kudrna; Wolfgang Golser; Elizabeth Ashley; Kristi Collura; Michele Braidotti; Yeisoo Yu; Luciano M Matzkin; Bryant F McAllister; Therese Ann Markow; Rod A Wing
The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research.
Genetics 2011;187(4):1023-30.
2011: Rik Op den Camp; Arend Streng; Stéphane De Mita; Qingqin Cao; Elisa Polone; Wei Liu; Jetty S S Ammiraju; Dave Kudrna; Rod A Wing; Andreas Untergasser; Ton Bisseling; René Geurts
LysM-type mycorrhizal receptor recruited for rhizobium symbiosis in nonlegume Parasponia.
Science (New York, N.Y.) 2011;331(6019):909-12.
2011: Xavier Argout; Jerome Salse; Jean-Marc Aury; Mark J Guiltinan; Gaetan Droc; Jerome Gouzy; Mathilde Allegre; Cristian Chaparro; Thierry Legavre; Siela N Maximova; Michael Abrouk; Florent Murat; Olivier Fouet; Julie Poulain; Manuel Ruiz; Yolande Roguet; Maguy Rodier-Goud; Jose Fernandes Barbosa-Neto; Francois Sabot; Dave Kudrna; Jetty Siva S Ammiraju; Stephan C Schuster; John E Carlson; Erika Sallet; Thomas Schiex; Anne Dievart; Melissa Kramer; Laura Gelley; Zi Shi; Aurélie Bérard; Christopher Viot; Michel Boccara; Ange Marie Risterucci; Valentin Guignon; Xavier Sabau; Michael J Axtell; Zhaorong Ma; Yufan Zhang; Spencer Brown; Mickael Bourge; Wolfgang Golser; Xiang Song; Didier Clement; Ronan Rivallan; Mathias Tahi; Joseph Moroh Akaza; Bertrand Pitollat; Karina Gramacho; Angélique D'Hont; Dominique Brunel; Diogenes Infante; Ismael Kebe; Pierre Costet; Rod A Wing; W Richard McCombie; Emmanuel Guiderdoni; Francis Quetier; Olivier Panaud; Patrick Wincker; Stephanie Bocs; Claire Lanaud
The genome of Theobroma cacao.
Nature genetics 2011;43(2):101-8.
2011: Matthew Blair; Natalia Hurtado; Carolina M Chavarro; Monica C Muñoz-Torres; Martha C Giraldo; Fabio Pedraza; Jeff Tomkins; Rod A Wing
Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series.
BMC plant biology 2011;11():50.
2011: Zhixi Tian; Yeisoo Yu; Feng Lin; Yeisoo Yu; Phillip SanMiguel; Rod A Wing; Susan R McCouch; Jianxin Ma; Scott A Jackson
Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.
BMC genomics 2011;12():142.
2011: Jorge A P Paiva; Elisa Prat; Sonia Vautrin; Mauro D Santos; Hélène San-Clemente; Sérgio Brommonschenkel; Paulo G S Fonseca; Dario Grattapaglia; Xiang Song; Jetty S S Ammiraju; David Kudrna; Rod A Wing; Ana T Freitas; Hélène Bergès; Jacqueline Grima-Pettenati
Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries.
BMC genomics 2011;12():137.
2011: Jinke Lin; Dave Kudrna; Rod A Wing
Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis).
Journal of biomedicine & biotechnology 2011;2011():476723.
2010: Armando Geraldes; Teri Rambo; Rod A Wing; Nuno Ferrand; Michael W Nachman
Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits.
Molecular biology and evolution 2010;27(11):2437-40.
2010: Abhijit Sanyal; Jetty S S Ammiraju; Fei Lu; Yeisoo Yu; Teri Rambo; Jennifer Currie; Kristi Kollura; Hye-Ran Kim; Jinfeng Chen; Jianxin Ma; Phillip San Miguel; Chen Mingsheng; Rod A Wing; Scott A Jackson
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
Molecular biology and evolution 2010;27(11):2487-506.
2010: Bonnie L Hurwitz; Dave Kudrna; Yeisoo Yu; Aswathy Sebastian; Andrea Zuccolo; Scott A Jackson; Doreen Ware; Rod A Wing; Lincoln Stein
Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.
The Plant journal : for cell and molecular biology 2010;63(6):990-1003.
2010: Liangying Dai; Jun Wu; Xunbo Li; Xuejun Wang; Xionglun Liu; Chatchawan Jantasuriyarat; Dave Kudrna; Yeisoo Yu; Rod A Wing; Bin Han; Bo Zhou; Guo-Liang Wang
Genomic structure and evolution of the Pi2/9 locus in wild rice species.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2010;121(2):295-309.
2010: Jeremy Schmutz; Steven B Cannon; Jessica Schlueter; Jianxin Ma; Therese Mitros; William Nelson; David L Hyten; Qijian Song; Jay J Thelen; Jianlin Cheng; Dong Xu; Uffe Hellsten; Gregory D May; Yeisoo Yu; Tetsuya Sakurai; Taishi Umezawa; Madan K Bhattacharyya; Devinder Sandhu; Babu Valliyodan; Erika Lindquist; Myron Peto; David Grant; Shengqiang Shu; David Goodstein; Kerrie Barry; Montona Futrell-Griggs; Brian Abernathy; Jianchang Du; Zhixi Tian; Liucun Zhu; Navdeep Gill; Trupti Joshi; Marc Libault; Anand Sethuraman; Xue-Cheng Zhang; Kazuo Shinozaki; Henry T Nguyen; Rod A Wing; Perry Cregan; James Specht; Jane Grimwood; Dan Rokhsar; Gary Stacey; Randy C Shoemaker; Scott A Jackson
Genome sequence of the palaeopolyploid soybean.
Nature 2010;463(7278):178-83.
2010: Melanie Febrer; Jose Luis Goicoechea; Jonathan Wright; Neil McKenzie; Xiang Song; Jinke Lin; Kristi Collura; Marina Wissotski; Yeisoo Yu; Jetty S S Ammiraju; Elzbieta Wolny; Dominika Idziak; Alexander Betekhtin; Dave Kudrna; Robert Hasterok; Rod A Wing; Michael W Bevan
An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.
PloS one 2010;5(10):e13461.
2010: Lifeng Lin; Gary J Pierce; John E Bowers; James C Estill; Rosana O Compton; Lisa K Rainville; Changsoo Kim; Cornelia Lemke; Junkang Rong; Haibao Tang; Xiyin Wang; Michele Braidotti; Amy H Chen; Kristen Chicola; Kristi Collura; Ethan Epps; Wolfgang Golser; Corrinne Grover; Jennifer Ingles; Santhosh Karunakaran; Dave Kudrna; Jaime Olive; Nabila Tabassum; Eareana Um; Marina Wissotski; Yeisoo Yu; Andrea Zuccolo; Mehboob ur Rahman; Daniel G Peterson; Rod A Wing; Jonathan F Wendel; Andrew H Paterson
A draft physical map of a D-genome cotton species (Gossypium raimondii).
BMC genomics 2010;11():395.
2009: Dongying Gao; Navdeep Gill; Hye-Ran Kim; Jason G Walling; Wenli Zhang; Chuanzhu Fan; Yeisoo Yu; Jianxin Ma; Phillip SanMiguel; Ning Jiang; Zhukuan Cheng; Rod A Wing; Jiming Jiang; Scott A Jackson
A lineage-specific centromere retrotransposon in Oryza brachyantha.
The Plant journal : for cell and molecular biology 2009;60(5):820-31.
2009: Patrick S Schnable; Doreen Ware; Robert S Fulton; Joshua C Stein; Fusheng Wei; Shiran Pasternak; Chengzhi Liang; Jianwei Zhang; Lucinda Fulton; Tina A Graves; Patrick Minx; Amy Denise Reily; Laura Courtney; Scott S Kruchowski; Chad Tomlinson; Cindy Strong; Kim Delehaunty; Catrina Fronick; Bill Courtney; Susan M Rock; Eddie Belter; Feiyu Du; Kyung Kim; Rachel M Abbott; Marc Cotton; Andy Levy; Pamela Marchetto; Kerri Ochoa; Stephanie M Jackson; Barbara Gillam; Weizu Chen; Le Yan; Jamey Higginbotham; Marco Cardenas; Jason Waligorski; Elizabeth Applebaum; Lindsey Phelps; Jason Falcone; Krishna Kanchi; Thynn Thane; Adam Scimone; Nay Thane; Jessica Henke; Tom Wang; Jessica Ruppert; Neha Shah; Kelsi Rotter; Jennifer Hodges; Elizabeth Ingenthron; Matt Cordes; Sara Kohlberg; Jennifer Sgro; Brandon Delgado; Kelly Mead; Asif Chinwalla; Shawn Leonard; Kevin Crouse; Kristi Collura; Dave Kudrna; Jennifer Currie; Ruifeng He; Angelina Angelova; Shanmugam Rajasekar; Teri Mueller; Rene Lomeli; Gabriel Scara; Ara Ko; Krista Delaney; Marina Wissotski; Georgina Lopez; David Campos; Michele Braidotti; Elizabeth Ashley; Wolfgang Golser; HyeRan Kim; Seunghee Lee; Jinke Lin; Zeljko Dujmic; Woojin Kim; Jayson Talag; Andrea Zuccolo; Chuanzhu Fan; Aswathy Sebastian; Melissa Kramer; Lori Spiegel; Lidia Nascimento; Theresa Zutavern; Beth Miller; Claude Ambroise; Stephanie Muller; Will Spooner; Apurva Narechania; Liya Ren; Sharon Wei; Sunita Kumari; Ben Faga; Michael J Levy; Linda McMahan; Peter Van Buren; Matthew W Vaughn; Kai Ying; Cheng-Ting Yeh; Scott J Emrich; Yi Jia; Ananth Kalyanaraman; An-Ping Hsia; W Brad Barbazuk; Regina S Baucom; Thomas P Brutnell; Nicholas C Carpita; Cristian Chaparro; Jer-Ming Chia; Jean-Marc Deragon; James C Estill; Yan Fu; Jeffrey A Jeddeloh; Yujun Han; Hyeran Lee; Pinghua Li; Damon R Lisch; Sanzhen Liu; Zhijie Liu; Dawn Holligan Nagel; McCann Maureen; Phillip SanMiguel; Alan Myers; Dan Nettleton; John Nguyen; Bryan W Penning; Lalit Ponnala; Kevin L Schneider; David C Schwartz; Anupma Sharma; Carol Soderlund; Nathan M Springer; Qi Sun; Hao Wang; Michael Waterman; Richard Westerman; Thomas K Wolfgruber; Lixing Yang; Yeisoo Yu; Lifang Zhang; Shiguo Zhou; Qihui Zhu; Jeffrey L Bennetzen; R Kelly Dawe; Jiming Jiang; Ning Jiang; Gernot G Presting; Susan R Wessler; Srinivas Aluru; Robert A Martienssen; Sandra W Clifton; W Richard McCombie; Rod A Wing; Richard K Wilson
The B73 maize genome: complexity, diversity, and dynamics.
Science (New York, N.Y.) 2009;326(5956):1112-5.
2009: Shiguo Zhou; Fusheng Wei; John Nguyen; Mike Bechner; Konstantinos Potamousis; Steve Goldstein; Louise Pape; Michael R Mehan; Chris Churas; Shiran Pasternak; Dan K Forrest; Roger Wise; Doreen Ware; Rod A Wing; Michael S Waterman; Miron Livny; David C Schwartz
A single molecule scaffold for the maize genome.
PLoS genetics 2009;5(11):e1000711.
2009: Fusheng Wei; Jianwei Zhang; Shiguo Zhou; Ruifeng He; Mary Schaeffer; Kristi Collura; Dave Kudrna; Ben P Faga; Marina Wissotski; Wolfgang Golser; Susan M Rock; Tina A Graves; Robert S Fulton; Ed Coe; Patrick S Schnable; David C Schwartz; Doreen Ware; Sandra W Clifton; Richard K Wilson; Rod A Wing
The physical and genetic framework of the maize B73 genome.
PLoS genetics 2009;5(11):e1000715.
2009: Fusheng Wei; Joshua C Stein; Chengzhi Liang; Jianwei Zhang; Robert S Fulton; Regina S Baucom; Emanuele De Paoli; Shiguo Zhou; Lixing Yang; Yujun Han; Shiran Pasternak; Apurva Narechania; Lifang Zhang; Cheng-Ting Yeh; Kai Ying; Dawn H Nagel; Kristi Collura; David Kudrna; Jennifer Currie; Jinke Lin; Hyeran Kim; Angelina Angelova; Gabriel Scara; Marina Wissotski; Wolfgang Golser; Laura Courtney; Scott Kruchowski; Tina A Graves; Susan M Rock; Stephanie Adams; Lucinda A Fulton; Catrina Fronick; William Courtney; Melissa Kramer; Lori Spiegel; Lydia Nascimento; Ananth Kalyanaraman; Cristian Chaparro; Jean-Marc Deragon; Phillip San Miguel; Ning Jiang; Susan R Wessler; Pamela J Green; Yeisoo Yu; David C Schwartz; Blake C Meyers; Jeffrey L Bennetzen; Robert A Martienssen; W Richard McCombie; Srinivas Aluru; Sandra W Clifton; Patrick S Schnable; Doreen Ware; Richard K Wilson; Rod A Wing
Detailed analysis of a contiguous 22-Mb region of the maize genome.
PLoS genetics 2009;5(11):e1000728.
2009: Karen A Cranston; Bonnie Hurwitz; Doreen Ware; Lincoln Stein; Rod A Wing
Species trees from highly incongruent gene trees in rice.
Systematic biology 2009;58(5):489-500.
2009: Gyoungju Nah; Christopher L Pagliarulo; Peter G Mohr; Meizhong Luo; Nicholas B Sisneros; Yeisoo Yu; Kristi Collura; Jennifer Currie; José L Goicoechea; Rod A Wing; Karen S Schumaker
Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana.
Genomics 2009;94(3):196-203.
2009: Patrick H Degnan; Yeisoo Yu; Nicholas Sisneros; Rod A Wing; Nancy Moran
Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(22):9063-8.
2009: Husen Zhang; John K DiBaise; Andrea Zuccolo; Dave Kudrna; Michele Braidotti; Yeisoo Yu; Prathap Parameswaran; Michael D Crowell; Rod A Wing; Bruce Rittman; Rosa Krajmalnik-Brown
Human gut microbiota in obesity and after gastric bypass.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(7):2365-70.
2009: Fei Lu; Jetty S S Ammiraju; Abhijit Sanyal; Shengli Zhang; Rentao Song; Jinfeng Chen; Guisheng Li; Yi Sui; Xiang Song; Zhukuan Cheng; Antonio Costa de Oliveira; Jeffrey L Bennetzen; Scott A Jackson; Rod A Wing; Mingsheng Chen
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(6):2071-6.
2008: Jetty S S Ammiraju; Fei Lu; Abhijit Sanyal; Yeisoo Yu; Xiang Song; Ning Jiang; Ana Clara Pontaroli; Teri Rambo; Jennifer Currie; Kristi Collura; Jayson Talag; Chuanzhu Fan; José L Goicoechea; Andrea Zuccolo; Jinfeng Chen; Jeffrey L Bennetzen; Mingsheng Chen; Scott Jackson; Rod A Wing
Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.
The Plant cell 2008;20(12):3191-209.
2008: Chuanzhu Fan; Yong Zhang; Yeisoo Yu; Steve Rounsley; Manyuan Long; Rod A Wing
The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice.
Molecular plant 2008;1(5):839-50.
2008: Loïc Le Cunff; Olivier Garsmeur; Louis-Marie Raboin; Jérome Pauquet; Hugues Telismart; Athiappan Selvi; Laurent Grivet; Romain Philippe; D Begum; Monique Deu; Laurent Costet; Rod A Wing; Jean Christophe Glaszmann; Angélique D'Hont
Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n approximately 12x approximately 115).
Genetics 2008;180(1):649-60.
2008: Corrinne E Grover; Yeisoo Yu; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
A phylogenetic analysis of indel dynamics in the cotton genus.
Molecular biology and evolution 2008;25(7):1415-28.
2008: Randy C Shoemaker; David Grant; Terry Olson; Wesley C Warren; Rod A Wing; Yeisoo Yu; HyeRan Kim; Perry Cregan; Bindu Joseph; Montona Futrell-Griggs; Will Nelson; Jon Davito; Jason Walker; John Wallis; Colin Kremitski; Debbie Scheer; Sandra W Clifton; Tina Graves; Henry Nguyen; Xiaolei Wu; Mingcheng Luo; Jan Dvorak; Rex Nelson; Steven Cannon; Jeffrey Tomkins; Jeremy Schmutz; Gary Stacey; Scott Jackson
Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2008;51(4):294-302.
2008: Anne Roulin; Benoit Piegu; Rod A Wing; Olivier Panaud
Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.
The Plant journal : for cell and molecular biology 2008;53(6):950-9.
2008: William Nelson; Meizhong Luo; Jianxin Ma; Matt Estep; James Estill; Ruifeng He; Jayson Talag; Nicholas B Sisneros; Dave Kudrna; Hyeran Kim; Jetty S S Ammiraju; Kristi Collura; Arvind K Bharti; Joachim Messing; Rod A Wing; Phillip SanMiguel; Jeffrey L Bennetzen; Carol Soderlund
Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.
BMC genomics 2008;9():621.
2008: Fusheng Wei; Rod A Wing
A fruitful outcome to the papaya genome project.
Genome biology 2008;9(6):227.
2008: Douglas E Soltis; Victor A Albert; Jim Leebens-Mack; Jeffrey D Palmer; Rod A Wing; Claude W dePamphilis; Hong Ma; John E Carlson; Naomi Altman; Sangtae Kim; P Kerr Wall; Andrea Zuccolo; Pamela S Soltis
The Amborella genome: an evolutionary reference for plant biology.
Genome biology 2008;9(3):402.
2008: HyeRan Kim; Bonnie Hurwitz; Yeisoo Yu; Kristi Collura; Navdeep Gill; Phillip SanMiguel; James C Mullikin; Christopher A. Maher; William Nelson; Marina Wissotski; Michele Braidotti; Dave Kudrna; José L Goicoechea; Lincoln Stein; Doreen Ware; Scott A Jackson; Carol Soderlund; Rod A Wing
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
Genome biology 2008;9(2):R45.
2008: Tsuyoshi Tanaka; Baltazar A Antonio; Shoshi Kikuchi; Takashi Matsumoto; Yoshiaki Nagamura; Hisataka Numa; Hiroaki Sakai; Jianzhong Wu; Takeshi Itoh; Takuji Sasaki; Ryo Aono; Yasuyuki Fujii; Takuya Habara; Erimi Harada; Masako Kanno; Yoshihiro Kawahara; Hiroaki Kawashima; Hiromi Kubooka; Akihiro Matsuya; Hajime Nakaoka; Naomi Saichi; Ryoko Sanbonmatsu; Yoshiharu Sato; Yuji Shinso; Mami Suzuki; Jun-ichi Takeda; Motohiko Tanino; Fusano Todokoro; Kaori Yamaguchi; Naoyuki Yamamoto; Chisato Yamasaki; Tadashi Imanishi; Toshihisa Okido; Masahito Tada; Kazuho Ikeo; Yoshio Tateno; Takashi Gojobori; Yao-Cheng Lin; Fu-Jin Wei; Yue-ie Hsing; Qiang Zhao; Bin Han; Melissa R Kramer; Richard W McCombie; David Lonsdale; Claire C O'Donovan; Eleanor J Whitfield; Rolf Apweiler; Kanako O Koyanagi; Jitendra P Khurana; Saurabh Raghuvanshi; Nagendra K Singh; Akhilesh K Tyagi; Georg Haberer; Masaki Fujisawa; Satomi Hosokawa; Yukiyo Ito; Hiroshi Ikawa; Michie Shibata; Mayu Yamamoto; Richard M Bruskiewich; Douglas R Hoen; Thomas E Bureau; Nobukazu Namiki; Hajime Ohyanagi; Yasumichi Sakai; Satoshi Nobushima; Katsumi Sakata; Roberto A Barrero; Yutaka Sato; Alexandre Souvorov; Brian Smith-White; Tatiana Tatusova; Suyoung An; Gynheung An; Satoshi OOta; Galina Fuks; Galina Fuks; Joachim Messing; Karen R Christie; Damien Lieberherr; HyeRan Kim; Andrea Zuccolo; Rod A Wing; Kan Nobuta; Pamela J Green; Cheng Lu; Blake C Meyers; Cristian Chaparro; Benoit Piegu; Olivier Panaud; Manuel Echeverria
The Rice Annotation Project Database (RAP-DB): 2008 update.
Nucleic acids research 2008;36(Database issue):D1028-33.
2008: Shaohong Qu; Aparna Desai; Rod A Wing; Venkatesan Sundaresan
A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants.
Plant physiology 2008;146(1):189-99.
2007: andrew clark; Michael B Eisen; Douglas R Smith; Casey M Bergman; Brian Oliver; Therese A Markow; Thomas C Kaufman; Manolis Kellis; William Gelbart; Venky N Iyer; Daniel A Pollard; Timothy B Sackton; Amanda M Larracuente; Nadia D Singh; Jose P Abad; Dawn N Abt; Boris Adryan; Montserrat Aguade; Hiroshi Akashi; Wyatt W Anderson; Charles F Aquadro; David H Ardell; Roman Arguello; Carlo G Artieri; Daniel A Barbash; Daniel Barker; Paolo Barsanti; Phil Batterham; Serafim Batzoglou; Dave Begun; Arjun Bhutkar; Enrico Blanco; Stephanie A Bosak; Robert K Bradley; Adrianne D Brand; Michael R Brent; Angela N Brooks; Randall H Brown; Roger K Butlin; Corrado Caggese; Brian R. Calvi; A Bernardo de Carvalho; Anat Caspi; Sergio Castrezana; Susan E Celniker; Jean L Chang; Charles Chapple; Sourav Chatterji; Asif Chinwalla; Alberto Civetta; Sandra W Clifton; Josep M Comeron; James C Costello; Jerry A Coyne; Jennifer Daub; Robert G David; Arthur L Delcher; Kim Delehaunty; Chuong B Do; Heather Ebling; Kevin Edwards; Thomas Eickbush; Jay Evans; Alan Filipski; Sven Findeiss; Eva Freyhult; Lucinda Fulton; Robert Fulton; Ana C L Garcia; Anastasia Gardiner; David A Garfield; Barry E Garvin; Greg Gibson; Donald G Gilbert; Sante Gnerre; Jennifer Godfrey; Robert Good; Valer Gotea; Brenton Gravely; Anthony J Greenberg; Sam Griffiths-Jones; Samuel Gross; Roderic Guigo; Erik A Gustafson; Wilfried Haerty; Matthew W Hahn; Daniel L Halligan; Aaron L Halpern; Gillian M Halter; Mira V Han; Andreas Heger; LaDeana Hillier; Angie S Hinrichs; Ian Holmes; Roger A Hoskins; Melissa J Hubisz; Dan Hultmark; Melanie A Huntley; David B Jaffe; Santosh Jagadeeshan; William R Jeck; Justin Johnson; Corbin D Jones; William C Jordan; Gary Karpen; Eiko Kataoka; Peter D Keightley; Pouya Kheradpour; Ewen F Kirkness; Leonardo B Koerich; Karsten Kristiansen; Dave Kudrna; Rob J Kulathinal; Sudhir Kumar; Roberta Kwok; Eric Lander; Charles H Langley; Richard Lapoint; Brian P Lazzaro; So-Jeong Lee; Lisa Levesque; Ruiqiang Li; Chiao-Feng Lin; Michael F Lin; Kerstin Lindblad-Toh; Ana Llopart; Manyuan Long; Lloyd Low; Elena Lozovsky; Jian Lu; Meizhong Luo; Carlos A Machado; Wojciech Makalowski; Mar Marzo; Muneo Matsuda; Luciano Matzkin; Bryant McAllister; Carolyn S McBride; Brendan McKernan; Kevin McKernan; Maria Mendez-Lago; Patrick Minx; Michael U Mollenhauer; Kristi Montooth; Steve Mount; Xu Mu; Eugene Myers; Barbara Negre; Stuart Newfeld; Rasmus Nielsen; Mohamed A F Noor; Patrick O'Grady; Lior Pachter; Montserrat Papaceit; Matthew J Parisi; Michael Parisi; Leopold Parts; Jakob S Pedersen; Graziano Pesole; Adam M Phillippy; Chris P Ponting; Mihai Pop; Damiano Porcelli; Jeffrey R Powell; Sonja J Prohaska; Kim Pruitt; Marta Puig; Hadi Quesneville; Kristipati Ravi Ram; David Rand; Matthew D Rasmussen; Laura K Reed; Robert Reenan; Amy Reily; Karin A Remington; Tania T Rieger; Michael G Ritchie; Charles Robin; Yu-Hui Rogers; Claudia Rohde; Julio Rozas; Marc J Rubenfield; Alfredo Ruiz; Susan Russo; Steven L Salzberg; Alejandro Sanchez-Gracia; David J Saranga; Hajime Sato; Stephen W Schaeffer; Michael C Schatz; Todd Schlenke; Russell Schwartz; Carmen Segarra; Rama S Singh; Laura K Sirot; Marina Sirota; Nicholas B Sisneros; Chris D Smith; Temple F Smith; John Spieth; Deborah E Stage; Alexander Stark; Wolfgang Stephan; Robert L Strausberg; Sebastian Strempel; David Sturgill; Granger Sutton; Granger G Sutton; Wei Tao; Sarah Teichmann; Yoshiko N Tobari; Yoshihiko Tomimura; Jason M Tsolas; Vera L S Valente; Eli Venter; J Craig Venter; Saverio Vicario; Filipe G Vieira; Albert J Vilella; Alfredo Villasante; Brian Walenz; Jun Wang; Marvin Wasserman; Thomas Watts; Derek Wilson; Richard K Wilson; Rod A Wing; Mariana F Wolfner; Alex Wong; Gane Ka-Shu Wong; Chung-I Wu; Gabriel Wu; Daisuke Yamamoto; Hsiao-Pei Yang; Shiaw-Pyng Yang; James A. Yorke; Kiyohito Yoshida; Evgeny Zdobnov; Peili Zhang; Yu Zhang; Aleksey V Zimin; Jennifer Baldwin; Amr Abdouelleil; Jamal Abdulkadir; Adal Abebe; Brikti Abera; Justin Abreu; St Christophe Acer; Lynne Aftuck; Allen Alexander; Peter An; Erica Anderson; Scott Anderson; Harindra Arachi; Marc Azer; Pasang Bachantsang; Andrew Barry; Tashi Bayul; Aaron Berlin; Daniel Bessette; Toby Bloom; Jason Blye; Leonid Boguslavskiy; Claude Bonnet; Boris Boukhgalter; Imane Bourzgui; Adam Brown; Patrick Cahill; Sheridon Channer; Yama Cheshatsang; Lisa Chuda; Mieke Citroen; Alville Collymore; Patrick Cooke; Maura Costello; Katie D'Aco; Riza Daza; Georgius De Haan; Stuart DeGray; Christina DeMaso; Norbu Dhargay; Kimberly Dooley; Erin Dooley; Missole Doricent; Passang Dorje; Kunsang Dorjee; Alan Dupes; Richard Elong; Jill Falk; Abderrahim Farina; Susan Faro; Diallo Ferguson; Sheila Fisher; Chelsea D Foley; Alicia Franke; Dennis Friedrich; Loryn Gadbois; Gary Gearin; Christina R Gearin; Georgia Giannoukos; Tina Goode; Joseph Graham; Edward Grandbois; Sharleen Grewal; Kunsang Gyaltsen; Nabil Hafez; Birhane Hagos; Jennifer Hall; Charlotte Henson; Andrew Hollinger; Tracey Honan; Monika D Huard; Leanne Hughes; Brian Hurhula; M Erii Husby; Asha Kamat; Ben Kanga; Seva Kashin; Dmitry Khazanovich; Peter Kisner; Krista Lance; Marcia Lara; William Lee; Niall Lennon; Frances Letendre; Rosie LeVine; Alex Lipovsky; Xiaohong Liu; Jinlei Liu; Shangtao Liu; Tashi Lokyitsang; Yeshi Lokyitsang; Rakela Lubonja; Annie Lui; Pen MacDonald; Vasilia Magnisalis; Kebede Maru; Charles Matthews; William McCusker; Susan McDonough; Teena Mehta; James Meldrim; Louis Meneus; Oana Mihai; Atanas Mihalev; Tanya Mihova; Rachel Mittelman; Valentine Mlenga; Anna Montmayeur; Leonidas Mulrain; Adam Navidi; Jerome Naylor; Tamrat Negash; Thu Nguyen; Nga Nguyen; Robert Nicol; Choe Norbu; Nyima Norbu; Nathaniel Novod; Barry O'Neill; Sahal Osman; Eva Markiewicz; Otero L Oyono; Christopher Patti; Pema Phunkhang; Fritz Pierre; Margaret Priest; Sujaa Raghuraman; Filip Rege; Rebecca Reyes; Cecil Rise; Peter Rogov; Keenan Ross; Elizabeth Ryan; Sampath Settipalli; Terry Shea; Ngawang Sherpa; Lu Shi; Diana Shih; Todd Sparrow; Jessica Spaulding; John Stalker; Nicole Stange-Thomann; Sharon Stavropoulos; Catherine Stone; Christopher Strader; Senait Tesfaye; Talene Thomson; Yama Thoulutsang; Dawa Thoulutsang; Kerri Topham; Ira Topping; Tsamla Tsamla; Helen Vassiliev; Andy Vo; Tsering Wangchuk; Tsering Wangdi; Michael Weiand; Jane Wilkinson; Adam Wilson; Shailendra Yadav; Geneva Young; Qing Yu; Lisa Zembek; Danni Zhong; Andrew Zimmer; Zac Zwirko; David B Jaffe; Pablo Alvarez; Will Brockman; Jonathan Butler; CheeWhye Chin; Sante Gnerre; Manfred Grabherr; Michael Kleber; Evan Mauceli; Iain MacCallum
Evolution of genes and genomes on the Drosophila phylogeny.
Nature 2007;450(7167):203-18.
2007: Kai-Yi Chen; Bin Cong; Rod A Wing; Julia Vrebalov; Steven D Tanksley
Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes.
Science (New York, N.Y.) 2007;318(5850):643-5.
2007: Jetty S S Ammiraju; Andrea Zuccolo; Yeisoo Yu; Xiang Song; Benoit Piegu; Frederic Chevalier; Jason G Walling; Jianxin Ma; Jayson Talag; Darshan S Brar; Phillip SanMiguel; Ning Jiang; Scott A Jackson; Olivier Panaud; Rod A Wing
Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.
The Plant journal : for cell and molecular biology 2007;52(2):342-51.
2007: Jianxin Ma; Rod A Wing; Jeffrey L Bennetzen; Scott A Jackson
Evolutionary history and positional shift of a rice centromere.
Genetics 2007;177(2):1217-20.
2007: RC Venu; Yulin Jia; Malali Gowda; Melissa H Jia; Chatchawan Jantasuriyarat; Eric Stahlberg; Huameng Li; Andrew Rhineheart; Prashanth Boddhireddy; Pratibha Singh; Neil Rutger; Dave Kudrna; Rod A Wing; James Nelson; Guo-Liang Wang
RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.
Molecular genetics and genomics : MGG 2007;278(4):421-31.
2007: Fusheng Wei; Ed Coe; William Nelson; Arvind K Bharti; Friedrich W Engler; Ed Butler; HyeRan Kim; José L Goicoechea; Mingsheng Chen; Seunghee Lee; Galina Fuks; Hector Sanchez-Villeda; Steven Schroeder; Zhiwei Fang; Michael D McMullen; Georgia Davis; John E Bowers; Andrew H Paterson; Mary Schaeffer; Jack Gardiner; Karen Cone; Joachim Messing; Carol Soderlund; Rod A Wing
Physical and genetic structure of the maize genome reflects its complex evolutionary history.
PLoS genetics 2007;3(7):e123.
2007: Corrinne E Grover; Hyeran Kim; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).
The Plant journal : for cell and molecular biology 2007;50(6):995-1006.
2007: Malali Gowda; RC Venu; Huameng Li; Chatchawan Jantasuriyarat; Songbiao Chen; Maria Bellizzi; Vishal Pampanwar; HyeRan Kim; Ralph A Dean; Eric Stahlberg; Rod A Wing; Carol Soderlund; Guo-Liang Wang
Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice.
Plant physiology 2007;144(1):524-33.
2007: HyeRan Kim; Phillip San Miguel; William Nelson; Kristi Collura; Marina Wissotski; Jason G Walling; Jun Pyo Kim; Scott A Jackson; Carol Soderlund; Rod A Wing
Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).
Genetics 2007;176(1):379-90.
2007: Jianxin Ma; Rod A Wing; Jeffrey L Bennetzen; Scott A Jackson
Plant centromere organization: a dynamic structure with conserved functions.
Trends in genetics : TIG 2007;23(3):134-9.
2007: Takeshi Itoh; Tsuyoshi Tanaka; Roberto A Barrero; Chisato Yamasaki; Yasuyuki Fujii; Phillip B Hilton; Baltazar A Antonio; Hideo Aono; Rolf Apweiler; Richard Bruskiewich; Thomas Bureau; Frances Burr; Antonio Costa de Oliveira; Galina Fuks; Takuya Habara; Georg Haberer; Bin Han; Erimi Harada; Aiko T Hiraki; Hirohiko Hirochika; Douglas Hoen; Hiroki Hokari; Satomi Hosokawa; Yue-ie Hsing; Hiroshi Ikawa; Kazuho Ikeo; Tadashi Imanishi; Yukiyo Ito; Pankaj Jaiswal; Masako Kanno; Yoshihiro Kawahara; Toshiyuki Kawamura; Hiroaki Kawashima; Jitendra P Khurana; Shoshi Kikuchi; Setsuko Komatsu; Kanako O Koyanagi; Hiromi Kubooka; Damien Lieberherr; Yao-Cheng Lin; David Lonsdale; Takashi Matsumoto; Akihiro Matsuya; W Richard McCombie; Joachim Messing; Akio Miyao; Nicola Mulder; Yoshiaki Nagamura; Jongmin Nam; Nobukazu Namiki; Hisataka Numa; Shin Nurimoto; Claire O'Donovan; Hajime Ohyanagi; Toshihisa Okido; Satoshi Oota; Naoki Osato; Lance E Palmer; Francis Quetier; Saurabh Raghuvanshi; Naomi Saichi; Hiroaki Sakai; Yasumichi Sakai; Katsumi Sakata; Tetsuya Sakurai; Fumihiko Sato; Yoshiharu Sato; Heiko Schoof; Motoaki Seki; Michie Shibata; Yuji Shimizu; Kazuo Shinozaki; Yuji Shinso; Nagendra K Singh; Brian Smith-White; Jun-ichi Takeda; Motohiko Tanino; Tatiana Tatusova; Supat Thongjuea; Fusano Todokoro; Mika Tsugane; Akhilesh K Tyagi; Apichart Vanavichit; Aihui Wang; Rod A Wing; Kaori Yamaguchi; Mayu Yamamoto; Naoyuki Yamamoto; Yeisoo Yu; Hao Zhang; Qiang Zhao; Kenichi Higo; Benjamin Burr; Takashi Gojobori; Takuji Sasaki
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
Genome research 2007;17(2):175-83.
2007: Jinwook Jung; So Youn Won; Seok-Cheol Suh; HyeRan Kim; Rod A Wing; Yeonhwa Jeong; Inhwan Hwang; Minkyun Kim
The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis.
Planta 2007;225(3):575-88.
2007: Andrea Zuccolo; Aswathy Sebastian; Jayson Talag; Yeisoo Yu; HyeRan Kim; Kristi Collura; Dave Kudrna; Rod A Wing
Transposable element distribution, abundance and role in genome size variation in the genus Oryza.
BMC evolutionary biology 2007;7():152.
2007: William M Nelson; Jan Dvorak; Ming-Cheng Luo; Joachim Messing; Rod A Wing; Carol Soderlund
Efficacy of clone fingerprinting methodologies.
Genomics 2007;89(1):160-5.
2006: Carol Soderlund; Karl Haller; Vishal Pampanwar; Daniel J Ebbole; Mark L Farman; Marc J Orbach; Guo-Liang Wang; Rod A Wing; Jin-Rong Xu; Doug Brown; Thomas Mitchell; Ralph Dean
MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions.
Molecular plant-microbe interactions : MPMI 2006;19(10):1055-61.
2006: Benoit Piegu; Romain Guyot; Nathalie Picault; Anne Roulin; Abhijit Saniyal; Hyeran Kim; Kristi Collura; Darshan S Brar; Scott Jackson; Rod A Wing; Abhijit Sanyal; Olivier Panaud
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.
Genome research 2006;16(10):1262-9.
2006: Jennifer S Hawkins; HyeRan Kim; John D Nason; Rod A Wing; Jonathan F Wendel
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium.
Genome research 2006;16(10):1252-61.
2006: Rémy Bruggmann; Arvind K Bharti; Heidrun Gundlach; Jinsheng Lai; Sarah Young; Ana C Pontaroli; Fusheng Wei; Georg Haberer; Galina Fuks; Chunguang Du; Christina Raymond; Matt C Estep; Renyi Liu; Jeffrey L Bennetzen; Agnes P Chan; Pablo D Rabinowicz; John Quackenbush; W Brad Barbazuk; Rod A Wing; Bruce Birren; Chad Nusbaum; Steve Rounsley; Klaus F X Mayer; Joachim Messing
Uneven chromosome contraction and expansion in the maize genome.
Genome research 2006;16(10):1241-51.
2006: Coen Adema; Mei-Zhong Luo; Ben Hanelt; Lynn A Hertel; Jennifer J Marshall; Si-Ming Zhang; Randall J DeJong; Hye-Ran Kim; Dave Kudrna; Rod A Wing; Carol Soderlund; Matty Knight; Fred A Lewis; Roberta Lima Caldeira; Liana K Jannotti-Passos; Omar dos Santos Carvalho; Eric S Loker
A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni.
Memórias do Instituto Oswaldo Cruz 2006;101 Suppl 1():167-77.
2006: Charles Cunningham; Jun-ichi Hikima; Matthew J Jenny; Robert W Chapman; Guang-Chen Fang; Chris Saski; Mats L Lundqvist; Rod A Wing; Pauline M Cupit; Paul S Gross; Gregory W Warr; Jeffrey Tomkins
New resources for marine genomics: bacterial artificial chromosome libraries for the Eastern and Pacific oysters (Crassostrea virginica and C. gigas).
Marine biotechnology (New York, N.Y.) 2006;8(5):521-33.
2006: Huihuang Yan; Hidetaka Ito; Kan Nobuta; Shu Ouyang; Weiwei Jin; Shulan Tian; Cheng Lu; RC Venu; Guo-Liang Wang; Pamela J Green; Rod A Wing; C Robin Buell; Blake C Meyers; Jiming Jiang
Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere.
The Plant cell 2006;18(9):2123-33.
2006: Joshua A Udall; Jordan M Swanson; Karl Haller; Ryan A Rapp; Michael E Sparks; Jamie Hatfield; Yeisoo Yu; Yingru Wu; Caitriona Dowd; Aladdin B Arpat; Brad A Sickler; Thea A Wilkins; Jin Ying Guo; Xiao Ya Chen; Jodi Scheffler; Earl Taliercio; Ricky Turley; Helen McFadden; Paxton Payton; Natalya Klueva; Randell Allen; Deshui Zhang; Candace Haigler; Curtis Wilkerson; Jinfeng Suo; Stefan R Schulze; Margaret L Pierce; Margaret Essenberg; Hyeran Kim; Danny J Llewellyn; Elizabeth S Dennis; David Kudrna; Rod A Wing; Andrew H Paterson; Cari Soderlund; Jonathan F Wendel
A global assembly of cotton ESTs.
Genome research 2006;16(3):441-50.
2006: Malali Gowda; RC Venu; Mohan B Raghupathy; Kan Nobuta; Huameng Li; Rod A Wing; Eric Stahlberg; Sean Couglan; Christian D Haudenschild; Ralph Dean; Baek Hie Nahm; Blake C Meyers; Guo-Liang Wang
Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods.
BMC genomics 2006;7():310.
2006: Barbara L Hass-Jacobus; Montona Futrell-Griggs; Brian Abernathy; Rick Westerman; José L Goicoechea; Joshua Stein; Patricia Klein; Bonnie Hurwitz; Bin Zhou; Fariborz Rakhshan; Abhijit Sanyal; Navdeep Gill; Jer-Young Lin; Jason G Walling; Mei Zhong Luo; Jetty S S Ammiraju; Dave Kudrna; Hye Ran Kim; Doreen Ware; Rod A Wing; Phillip San Miguel; Scott A Jackson
Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.
BMC genomics 2006;7():199.
2006: Meizhong Luo; Hyeran Kim; Dave Kudrna; Nicholas B Sisneros; So-Jeong Lee; Christopher Mueller; Kristi Collura; Andrea Zuccolo; E Bryan Buckingham; Suzanne M Grim; Kazuyo Yanagiya; Hidetoshi Inoko; Takashi Shiina; Martin F Flajnik; Rod A Wing; Yuko Ota
Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey.
BMC genomics 2006;7():106.
2006: Jetty S S Ammiraju; Meizhong Luo; José L Goicoechea; Wenming Wang; Dave Kudrna; Christopher Mueller; Jayson Talag; HyeRan Kim; Nicholas B Sisneros; Barbara P Blackmon; Eric Fang; Jeffrey Tomkins; Darshan S Brar; David Mackill; Susan R McCouch; Nori Kurata; Georgina Lambert; David W Galbraith; K Arumuganathan; Kiran Rao; Jason G Walling; Navdeep Gill; Yeisoo Yu; Phillip SanMiguel; Carol Soderlund; Scott Jackson; Rod A Wing
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.
Genome research 2006;16(1):140-7.
2006: Meizhong Luo; Yeisoo Yu; Hyeran Kim; Dave Kudrna; Yuichiro Itoh; Robert J Agate; Esther Melamed; José L Goicoechea; Jayson Talag; Christopher Mueller; Wenming Wang; Jennifer Currie; Nicholas B Sisneros; Rod A Wing; Arthur P Arnold
Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region.
Genomics 2006;87(1):181-90.
2005: Georg Haberer; Sarah Young; Arvind K Bharti; Heidrun Gundlach; Christina Raymond; Galina Fuks; Ed Butler; Rod A Wing; Steve Rounsley; Bruce Birren; Chad Nusbaum; Klaus F X Mayer; Joachim Messing
Structure and architecture of the maize genome.
Plant physiology 2005;139(4):1612-24.
2005: Chellian Santhosh Kumar; Rod A Wing; Venkatesan Sundaresan
Efficient insertional mutagenesis in rice using the maize En/Spm elements.
The Plant journal : for cell and molecular biology 2005;44(5):879-92.
2005: Jetty S S Ammiraju; Yeisoo Yu; Meizhong Luo; Dave Kudrna; HyeRan Kim; José L Goicoechea; Yuichi Katayose; Takashi Matsumoto; Jianzhong Wu; Takuji Sasaki; Rod A Wing
Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(8):1596-607.
2005: Lee H Pratt; Chun Liang; Manish Shah; Feng Sun; Haiming Wang; St Patrick Reid; Alan R Gingle; Andrew H Paterson; Rod A Wing; Ralph Dean; Robert Klein; Henry T Nguyen; Hong-Mei Ma; Xin Zhao; Daryl T Morishige; John E Mullet; Marie-Michèle Cordonnier-Pratt
Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts.
Plant physiology 2005;139(2):869-84.
2005: John E Bowers; Miguel A Arias; Rochelle Asher; Jennifer A Avise; Robert T Ball; Gene A Brewer; Ryan W Buss; Amy H Chen; Thomas M Edwards; James C Estill; Heather E Exum; Valorie H Goff; Kristen L Herrick; Cassie L James Steele; Santhosh Karunakaran; Gmerice K Lafayette; Cornelia Lemke; Barry S Marler; Shelley L Masters; Joana M McMillan; Lisa K Nelson; Graham A Newsome; Chike C Nwakanma; Rosana N Odeh; Cynthia A Phelps; Elizabeth A Rarick; Carl J Rogers; Sean P Ryan; Keimun A Slaughter; Carol A Soderlund; Haibao Tang; Rod A Wing; Andrew H Paterson
Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(37):13206-11.
2005: Rod A Wing; Jetty S S Ammiraju; Meizhong Luo; Hyeran Kim; Yeisoo Yu; Dave Kudrna; José L Goicoechea; Wenming Wang; William Nelson; Kiran Rao; Darshan S Brar; David Mackill; Bin Han; Carol Soderlund; Lincoln Stein; Phillip SanMiguel; Scott Jackson
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
Plant molecular biology 2005;59(1):53-62.
2005: William M Nelson; Arvind K Bharti; Ed Butler; Fusheng Wei; Galina Fuks; Hyeran Kim; Rod A Wing; Joachim Messing; Carol Soderlund
Whole-genome validation of high-information-content fingerprinting.
Plant physiology 2005;139(1):27-38.
2005: C Robin Buell; Qiaoping Yuan; Shu Ouyang; Jia Liu; Wei Zhu; Aihui Wang; Rama Maiti; Brian Haas; Jennifer Wortman; Mihaela Pertea; Kristine M Jones; Mary Kim; Larry Overton; Tamara Tsitrin; Douglas Fadrosh; Jayati Bera; Bruce Weaver; Shaohua Jin; Shivani Johri; Matt Reardon; Kristen Webb; Jessica Hill; Kelly Moffat; Luke Tallon; Susan Van Aken; Matthew Lewis; Teresa Utterback; Tamara Feldblyum; Victoria L Zismann; Stacey Iobst; Joseph Hsiao; Aymeric R de Vazeille; Steven L Salzberg; Owen R White; Claire M Fraser-Liggett; Yeisoo Yu; HeyRan Kim; Teri Rambo; Jennifer Currie; Kristi Collura; Shelly Kernodle-Thompson; Fusheng Wei; Kudrna Kudrna; Jetty Siva S Ammiraju; Meizhong Luo; Jose Luis Goicoechea; Rod A Wing; David Henry; Ryan Oates; Michael Palmer; Gina Pries; Christopher Saski; Jessica Simmons; Carol Soderlund; William Nelson; Melissa de la Bastide; Lori Spiegel; Lidia Nascimento; Emily Huang; Raymond Preston; Theresa Zutavern; Lance Palmer; Andrew O'Shaughnessy; Sujit Dike; W Richard McCombie; Pat Minx; Holly Cordum; Richard Wilson; Weiwei Jin; Hye-Ran Lee; Jiming Jiang; Scott Jackson
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.
Genome research 2005;15(9):1284-91.
2005: Tae-Jin Yang; Yeisoo Yu; Song-Bin Chang; Hans de Jong; Chang-Sik Oh; Sang-Nag Ahn; Eric Fang; Rod A Wing
Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(3):467-78.
2005: Tae-Jin Yang; Seunghee Lee; Song-Bin Chang; Yeisoo Yu; Hans de Jong; Rod A Wing
In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons.
Chromosoma 2005;114(2):103-17.
2005: Chatchawan Jantasuriyarat; Malali Gowda; Karl Haller; James Hatfield; Guodong Lu; Eric Stahlberg; Bo Zhou; Huameng Li; HyRan Kim; Yeisoo Yu; Ralph A Dean; Rod A Wing; Carol Soderlund; Guo-Liang Wang
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.
Plant physiology 2005;138(1):105-15.
2005: Renate Horn; Anne-Claire Lecouls; Ann Callahan; Abhaya Dandekar; Lilibeth Garay; Per McCord; Werner Howad; Helen Chan; Ignazio Verde; Dorrie Main; Sook Jung; Laura L Georgi; Sam Forrest; Jennifer Mook; Tatyana Zhebentyayeva; Yeisoo Yu; Hye Ran Kim; Christopher Jesudurai; Bryon Sosinski; Pere Arús; Vance Baird; Dan Parfitt; Gregory L Reighard; Ralph Scorza; Jeffrey Tomkins; Rod A Wing; Albert G Abbott
Candidate gene database and transcript map for peach, a model species for fruit trees.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;110(8):1419-28.
2005: Wenming Wang; Milos Tanurdzic; Meizhong Luo; Nicholas B Sisneros; Hye Ran Kim; Jing-Ke Weng; Dave Kudrna; Christopher Mueller; K Arumuganathan; John Carlson; Clint Chapple; Claude de Pamphilis; Dina F Mandoli; Jeffrey Tomkins; Rod A Wing; Jo Ann Banks
Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics.
BMC plant biology 2005;5():10.
2004: Jeffrey Tomkins; Martin Fregene; Dorrie Main; HyeRan Kim; Rod A Wing; J Tohme
Bacterial artificial chromosome (BAC) library resource for positional cloning of pest and disease resistance genes in cassava (Manihot esculenta Crantz).
Plant molecular biology 2004;56(4):555-61.
2004: Joachim Messing; Arvind K Bharti; Wojciech M Karlowski; Heidrun Gundlach; Hye Ran Kim; Yeisoo Yu; Fusheng Wei; Galina Fuks; Carol Soderlund; Klaus F X Mayer; Rod A Wing
Sequence composition and genome organization of maize.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(40):14349-54.
2004: Corrinne E Grover; HyeRan Kim; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
Incongruent patterns of local and global genome size evolution in cotton.
Genome research 2004;14(8):1474-82.
2004: Michael R Thon; Stanton L Martin; Stephen Goff; Rod A Wing; Ralph A Dean
BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea.
Fungal genetics and biology : FG & B 2004;41(7):657-66.
2004: Martha Hamblin; Sharon E Mitchell; Gemma M White; Javier Gallego; Rakesh Kukatla; Rod A Wing; Andrew H Paterson; Stephen Kresovich
Comparative population genetics of the panicoid grasses: sequence polymorphism, linkage disequilibrium and selection in a diverse sample of sorghum bicolor.
Genetics 2004;167(1):471-83.
2004: Nagendra K Singh; Saurabh Raghuvanshi; Subodh K Srivastava; Anupama Gaur; Ajit K Pal; Vivek Dalal; Archana Singh; Irfan A Ghazi; Ashutosh Bhargav; Mahavir Yadav; Anupam Dixit; Kamlesh Batra; Kishor Gaikwad; Tilak R Sharma; Amitabh Mohanty; Arvind K Bharti; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; Shubha Vij; Ravi Vydianathan; Parul Khurana; Sulabha Sharma; W Richard McCombie; Joachim Messing; Rod A Wing; Takuji Sasaki; Paramjit Khurana; Trilochan Mohapatra; Jitendra P Khurana; Akhilesh K Tyagi
Sequence analysis of the long arm of rice chromosome 11 for rice-wheat synteny.
Functional & integrative genomics 2004;4(2):102-17.
2004: Fred S Dietrich; Sylvia Voegeli; Sophie Brachat; Anita Lerch; Krista Gates; Sabine Steiner; Christine Mohr; Rainer Pöhlmann; Philippe Luedi; Sangdun Choi; Rod A Wing; Albert Flavier; Thomas D Gaffney; Peter Philippsen
The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome.
Science (New York, N.Y.) 2004;304(5668):304-7.
2004: A Bulak Arpat; Mark Waugh; John P Sullivan; Michael Gonzales; David Frisch; Dorrie Main; Todd Wood; Anna Leslie; Rod A Wing; Thea A Wilkins
Functional genomics of cell elongation in developing cotton fibers.
Plant molecular biology 2004;54(6):911-29.
2004: Jack Gardiner; Steven Schroeder; Mary L Polacco; Hector Sanchez-Villeda; Zhiwei Fang; Michele Morgante; Tim Landewe; Kevin Fengler; Francisco Useche; Michael Hanafey; Scott Tingey; Hugh Chou; Rod A Wing; Carol Soderlund; Edward H Coe
Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization.
Plant physiology 2004;134(4):1317-26.
2004: Timothy J Close; Steve I Wanamaker; Rico A Caldo; Stacy M Turner; Daniel A Ashlock; Julie A Dickerson; Rod A Wing; Gary J Muehlbauer; Andris Kleinhofs; Roger P Wise
A new resource for cereal genomics: 22K barley GeneChip comes of age.
Plant physiology 2004;134(3):960-8.
2004: Yu Zhang; Yuchen Huang; Lei Zhang; Ying Li; Tingting Lu; Yiqi Lu; Qi Feng; Qiang Zhao; Zhukuan Cheng; Yongbiao Xue; Rod A Wing; Bin Han
Structural features of the rice chromosome 4 centromere.
Nucleic acids research 2004;32(6):2023-30.
2004: Junkang Rong; Colette Abbey; John E Bowers; Curt L Brubaker; Charlene Chang; Peng W Chee; Terrye A Delmonte; Xiaoling Ding; Juan J Garza; Barry S Marler; Chan-hwa Park; Gary J Pierce; Katy M Rainey; Vipin K Rastogi; Stefan R Schulze; Norma L Trolinder; Jonathan F Wendel; Thea A Wilkins; T Dawn Williams-Coplin; Rod A Wing; Robert J Wright; Xinping Zhao; Linghua Zhu; Andrew H Paterson
A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium).
Genetics 2004;166(1):389-417.
2004: MA Budiman; Song-Bin Chang; Seunghee Lee; Tae-Jin Yang; H-B Zhang; Hans de Jong; Rod A Wing
Localization of jointless-2 gene in the centromeric region of tomato chromosome 12 based on high resolution genetic and physical mapping.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2004;108(2):190-6.
2003: Tae-Jin Yang; Yeisoo Yu; Gyoungju Nah; Michael Atkins; Seunghee Lee; David A Frisch; Rod A Wing
Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(4):652-60.
2003: Laura L Georgi; Ying Wang; Gregory L Reighard; Long Mao; Rod A Wing; Albert G Abbott
Comparison of peach and Arabidopsis genomic sequences: fragmentary conservation of gene neighborhoods.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2003;46(2):268-76.
2003: David S Senchina; Ines Alvarez; Richard Cronn; Bao Liu; Junkang Rong; Richard D Noyes; Andrew H Paterson; Rod A Wing; Thea A Wilkins; Jonathan F Wendel
Rate variation among nuclear genes and the age of polyploidy in Gossypium.
Molecular biology and evolution 2003;20(4):633-43.
2003: Meizhong Luo; Rod A Wing
An improved method for plant BAC library construction.
Methods in molecular biology (Clifton, N.J.) 2003;236():3-20.
2002: Karen Cone; Michael D McMullen; Irie Vroh Bi; Georgia L Davis; Young-Sun Yim; Jack M Gardiner; Mary L Polacco; Hector Sanchez-Villeda; Zhiwei Fang; Steve G Schroeder; Seth A Havermann; John E Bowers; Andrew H Paterson; Carol Soderlund; Friedrich W Engler; Rod A Wing; Edward H Coe
Genetic, physical, and informatics resources for maize. On the road to an integrated map.
Plant physiology 2002;130(4):1598-605.
2002: Fusheng Wei; Rod A Wing; Roger P Wise
Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley.
The Plant cell 2002;14(8):1903-17.
2002: Ning Jiang; Zhirong Bao; Svetlana Temnykh; Zhukuan Cheng; Jiming Jiang; Rod A Wing; Susan R McCouch; Susan R Wessler
Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice.
Genetics 2002;161(3):1293-305.
2002: Qiang Zhao; Yu Zhang; Zhukuan Cheng; Mingsheng Chen; Shengyue Wang; Qi Feng; Yucheng Huang; Ying Li; Yesheng Tang; Bo Zhou; Zhehua Chen; Shuliang Yu; Jingjie Zhu; Xin Hu; Jie Mu; Kai Ying; Pei Hao; Lei Zhang; Yiqi Lu; Lei S Zhang; Yilei Liu; Zhen Yu; Danlin Fan; Qijun Weng; Ling Chen; Tingting Lu; Xiaohui Liu; Peixin Jia; Tongguo Sun; Yongrui Wu; Yujun Zhang; Ying Lu; Can Li; Rong Wang; Haiyan Lei; Tao Li; Hao Hu; Mei Wu; Runquan Zhang; Jianping Guan; Jia Zhu; Gang Fu; Minghong Gu; Guofan Hong; Yongbiao Xue; Rod A Wing; Jiming Jiang; Bin Han
A fine physical map of the rice chromosome 4.
Genome research 2002;12(5):817-23.
2002: Stephen A Goff; Darrell Ricke; Tien-Hung Lan; Gernot Presting; Ronglin Wang; Molly Dunn; Jane Glazebrook; Allen Sessions; Paul Oeller; Hemant Varma; David Hadley; Don Hutchison; Chris Martin; Fumiaki Katagiri; B Markus Lange; Todd Moughamer; Yu Xia; Paul Budworth; Jingping Zhong; Trini Miguel; Uta Paszkowski; Shiping Zhang; Michelle Colbert; Wei-lin Sun; Lili Chen; Bret Cooper; Sylvia Park; Todd Charles Wood; Long Mao; Peter Quail; Rod A Wing; Ralph Dean; Yeisoo Yu; Andrey Zharkikh; Richard Shen; Sudhir Sahasrabudhe; Alun Thomas; Rob Cannings; Alexander Gutin; Dmitry Pruss; Julia Reid; Sean Tavtigian; Jeff Mitchell; Glenn Eldredge; Terri Scholl; Rose Mary Miller; Satish Bhatnagar; Nils Adey; Todd Rubano; Nadeem Tusneem; Rosann Robinson; Jane Feldhaus; Teresita Macalma; Arnold Oliphant; Steven Briggs
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).
Science (New York, N.Y.) 2002;296(5565):92-100.
2002: Mingsheng Chen; Gernot Presting; W Brad Barbazuk; Jose Luis Goicoechea; Barbara Blackmon; Guangchen Fang; Hyeran Kim; David Frisch; Yeisoo Yu; Shouhong Sun; Stephanie Higingbottom; John Phimphilai; Dao Phimphilai; Scheen Thurmond; Brian Gaudette; Ping Li; Jingdong Liu; Jamie Hatfield; Dorrie Main; Kasey Farrar; Caroline Henderson; Laura Barnett; Ravi Costa; Brian Williams; Suzanne Walser; Michael Atkins; Caroline Hall; Muhammad A Budiman; Jeffrey Tomkins; Meizhong Luo; Ian Bancroft; Jerome Salse; Farid Regad; Trilochan Mohapatra; Nagendra K Singh; Akhilesh K Tyagi; Carol Soderlund; Ralph A Dean; Rod A Wing
An integrated physical and genetic map of the rice genome.
The Plant cell 2002;14(3):537-45.
2002: Robert M Gemmill; Richard Bolin; Hans Albertsen; Jeffrey Tomkins; Rod A Wing
Pulsed-field gel electrophoresis for long-range restriction mapping.
Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.] 2002;Chapter 5():Unit5.1.
2002: Jeffrey Tomkins; Meizhong Luo; G C Fang; Dorrie Main; José L Goicoechea; M Atkins; David A Frisch; Robert E Page; Ernesto Guzmán-Novoa; Yeisoo Yu; Greg Hunt; Rod A Wing
New genomic resources for the honey bee(Apis mellifera L.): development of a deep-coverage BAC library and a preliminary STC database.
Genetics and molecular research : GMR 2002;1(4):306-16.
2002: Zhukuan Cheng; C Robin Buell; Rod A Wing; Jiming Jiang
Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2002;10(5):379-87.
2002: W P Wechter; D Begum; GG Presting; J J Kim; Rod A Wing; D A Kluepfel
Physical mapping, BAC-end sequence analysis, and marker tagging of the soilborne nematicidal bacterium, Pseudomonas synxantha BG33R.
Omics : a journal of integrative biology 2002;6(1):11-21.
2002: Edward H Coe; Karen Cone; Michael D McMullen; Su-Shing Chen; Georgia Davis; Jack Gardiner; Emmanuel Liscum; Mary L Polacco; Andrew Paterson; Hector Sanchez-Villeda; Carol Soderlund; Rod A Wing
Access to the maize genome: an integrated physical and genetic map.
Plant physiology 2002;128(1):9-12.
2002: Stanton L Martin; Barbara P Blackmon; Ravi Rajagopalan; Thomas D Houfek; Robert G Sceeles; Sheila O Denn; Thomas K Mitchell; Douglas E Brown; Rod A Wing; Ralph A Dean
MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea.
Nucleic acids research 2002;30(1):121-4.
2001: Zhukuan Cheng; C Robin Buell; Rod A Wing; Minghong Gu; Jiming Jiang
Toward a cytological characterization of the rice genome.
Genome research 2001;11(12):2133-41.
2001: B Martinez; Jeffrey Tomkins; Lawrence P Wackett; Rod A Wing; Michael J Sadowsky
Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP.
Journal of bacteriology 2001;183(19):5684-97.
2001: Jeffrey Tomkins; Todd C Wood; Minviluz G Stacey; John Loh; Adam Judd; José L Goicoechea; Gary Stacey; Michael J Sadowsky; Rod A Wing
A marker-dense physical map of the Bradyrhizobium japonicum genome.
Genome research 2001;11(8):1434-40.
2001: L Mao; D Begum; S A Goff; Rod A Wing
Sequence and analysis of the tomato JOINTLESS locus.
Plant physiology 2001;126(3):1331-40.
2001: Zhong-Nan Yang; X R Ye; S Choi; Joe Molina; Francis Moonan; Rod A Wing; Mikeal L Roose; T Erik Mirkov
Construction of a 1.2-Mb contig including the citrus tristeza virus resistance gene locus using a bacterial artificial chromosome library of Poncirus trifoliata (L.) Raf.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2001;44(3):382-93.
2001: Meizhong Luo; Y H Wang; David A Frisch; Tarek Joobeur; Rod A Wing; Ralph A Dean
Melon bacterial artificial chromosome (BAC) library construction using improved methods and identification of clones linked to the locus conferring resistance to melon Fusarium wilt (Fom-2).
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2001;44(2):154-62.
2001: Zhukuan Cheng; GG Presting; C Robin Buell; Rod A Wing; Jiming Jiang
High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice.
Genetics 2001;157(4):1749-57.
2001: W Wang; W Zhai; M Luo; G Jiang; X Chen; X Li; Rod A Wing; L Zhu
Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library.
Molecular genetics and genomics : MGG 2001;265(1):118-25.
2001: Xavier Draye; Yann-Rong Lin; X Y Qian; John E Bowers; G B Burow; Peter Morrell; Daniel G Peterson; GG Presting; S X Ren; Rod A Wing; Andrew H Paterson
Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the sorghum genome as a foundation.
Plant physiology 2001;125(3):1325-41.
2001: GG Presting; MA Budiman; T Wood; Yeisoo Yu; Hye Ran Kim; José L Goicoechea; Eric Fang; B Blackman; Jiming Jiang; S S Woo; Ralph A Dean; David A Frisch; Rod A Wing
A framework for sequencing the rice genome.
Novartis Foundation symposium 2001;236():13-24; discussion 24-7.
2000: Arnis Druka; Dave Kudrna; F Han; Andrzej Kilian; Brian J Steffenson; David A Frisch; Jeffrey Tomkins; Rod A Wing; Andris Kleinhofs
Physical mapping of the barley stem rust resistance gene rpg4.
Molecular & general genetics : MGG 2000;264(3):283-90.
2000: Qiaoping Yuan; Frank Liang; Joseph Hsiao; Victoria L Zismann; M I Benito; John Quackenbush; Rod A Wing; R Buell
Anchoring of rice BAC clones to the rice genetic map in silico.
Nucleic acids research 2000;28(18):3636-41.
2000: L Mao; D Begum; H W Chuang; MA Budiman; Eugene J Szymkowiak; Erin E Irish; Rod A Wing
JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development.
Nature 2000;406(6798):910-3.
2000: L Mao; Todd C Wood; Yeisoo Yu; MA Budiman; Jeffrey Tomkins; S Woo; M Sasinowski; GG Presting; David A Frisch; S Goff; Ralph A Dean; Rod A Wing
Rice transposable elements: a survey of 73,000 sequence-tagged-connectors.
Genome research 2000;10(7):982-90.
2000: Yann-Rong Lin; Xavier Draye; X Qian; S Ren; L H Zhu; Jeffrey Tomkins; Rod A Wing; Z Li; Andrew H Paterson
Locus-specific contig assembly in highly-duplicated genomes, using the BAC-RF method.
Nucleic acids research 2000;28(7):E23.
2000: S Choi; D Begum; H Koshinsky; D W Ow; Rod A Wing
A new approach for the identification and cloning of genes: the pBACwich system using Cre/lox site-specific recombination.
Nucleic acids research 2000;28(7):E19.
2000: MA Budiman; L Mao; Todd C Wood; Rod A Wing
A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing.
Genome research 2000;10(1):129-36.
1999: Diego Lijavetzky; G Muzzi; Thomas Wicker; Beat Keller; Rod A Wing; Jorge Dubcovsky
Construction and characterization of a bacterial artificial chromosome (BAC) library for the A genome of wheat.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1999;42(6):1176-82.
1999: Fusheng Wei; K Gobelman-Werner; S M Morroll; Joachim Kurth; L Mao; Rod A Wing; Dario Leister; Paul Schulze-Lefert; Roger P Wise
The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley.
Genetics 1999;153(4):1929-48.
1999: Jeffrey Tomkins; R Mahalingam; H Smith; José L Goicoechea; Halina T Knap; Rod A Wing
A bacterial artificial chromosome library for soybean PI 437654 and identification of clones associated with cyst nematode resistance.
Plant molecular biology 1999;41(1):25-32.
1999: J P Tomkins; David A Frisch; H Miller-Smith; S S Woo; Yeisoo Yu; Rod A Wing
A bacterial artificial chromosome library for sugarcane.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 1999;99(3-4):419-24.
1999: Jeffrey Tomkins; H Miller-Smith; M Sasinowski; S Choi; H Sasinowska; Matthew F Verce; David L Freedman; Ralph A Dean; Rod A Wing
Physical map and gene survey of the Ochrobactrum anthropi genome using bacterial artificial chromosome contigs.
Microbial & comparative genomics 1999;4(3):203-17.
1998: Y F Huang; W R Jordan; Rod A Wing; Page W Morgan
Gene expression induced by physical impedance in maize roots.
Plant molecular biology 1998;37(6):921-30.
1998: T G Phan; A Sakulsaengprapha; M Wilson; Rod A Wing
Ruptured internal mammary artery aneurysm presenting as massive spontaneous haemothorax in a patient with Ehlers-Danlos syndrome.
Australian and New Zealand journal of medicine 1998;28(2):210-1.
1998: MS Zwick; M Nurul Islam-Faridi; D G Czeschin; Rod A Wing; G E Hart; David M Stelly; H James Price
Physical mapping of the liguleless linkage group in Sorghum bicolor using rice RFLP-selected sorghum BACs.
Genetics 1998;148(4):1983-92.
1997: Hong-Bin Zhang; Rod A Wing
Physical mapping of the rice genome with BACs.
Plant molecular biology 1997;35(1-2):115-27.
1997: M I Gómez; M N Islam-Faridi; S S Woo; D Czeschin; M S Zwick; DAVID MATTHIAS STELLY; H J Price; K F Schertz; Rod A Wing
FISH of a maize sh2-selected sorghum BAC to chromosomes of Sorghum bicolor.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1997;40(4):475-8.
1997: Heng Zhu; S Choi; A K Johnston; Rod A Wing; Ralph A Dean
A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: genome analysis, contig assembly, and gene cloning.
Fungal genetics and biology : FG & B 1997;21(3):337-47.
1997: M Chen; Phillip SanMiguel; A C de Oliveira; S S Woo; Huamin Zhang; Rod A Wing; Jeffrey L Bennetzen
Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(7):3431-5.
1997: M S Zwick; R E Hanson; M N Islam-Faridi; DAVID MATTHIAS STELLY; Rod A Wing; H J Price; T D McKnight
A rapid procedure for the isolation of C0t-1 DNA from plants.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1997;40(1):138-42.
1996: Zoya Avramova; Alexander Tikhonov; Phillip SanMiguel; Y K Jin; C Liu; S S Woo; Rod A Wing; Jeffrey L Bennetzen
Gene identification in a complex chromosomal continuum by local genomic cross-referencing.
The Plant journal : for cell and molecular biology 1996;10(6):1163-8.
1996: J P Vielle-Calzada; M L Nuccio; M A Budiman; Terry L Thomas; B L Burson; M A Hussey; Rod A Wing
Comparative gene expression in sexual and apomictic ovaries of Pennisetum ciliare (L.) Link.
Plant molecular biology 1996;32(6):1085-92.
1996: Jiming Jiang; Shuhei Nasuda; Fenggao Dong; C W Scherrer; S S Woo; Rod A Wing; Bikram S Gill; D C Ward
A conserved repetitive DNA element located in the centromeres of cereal chromosomes.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(24):14210-3.
1996: Jeffrey L Bennetzen; Phillip SanMiguel; C N Liu; M Chen; Alexander Tikhonov; Antonio Costa de Oliveira; Y K Jin; Zoya Avramova; S S Woo; H Zhang; Rod A Wing
The Hybaid Lecture. Microcollinearity and segmental duplication in the evolution of grass nuclear genomes.
Symposia of the Society for Experimental Biology 1996;50():1-3.
1995: X Zhao; Rod A Wing; Andrew H Paterson
Cloning and characterization of the majority of repetitive DNA in cotton (Gossypium L.).
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1995;38(6):1177-88.
1995: L Cai; Jeremy F Taylor; Rod A Wing; Dan S Gallagher; S S Woo; Scott K Davis
Construction and characterization of a bovine bacterial artificial chromosome library.
Genomics 1995;29(2):413-25.
1995: R E Hanson; M S Zwick; S Choi; M Nurul Islam-Faridi; Thomas D McKnight; Rod A Wing; H James Price; David M Stelly
Fluorescent in situ hybridization of a bacterial artificial chromosome.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1995;38(4):646-51.
1994: S S Woo; Jiming Jiang; Bikram S Gill; Andrew H Paterson; Rod A Wing
Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor.
Nucleic acids research 1994;22(23):4922-31.
1994: Hong-Bin Zhang; Gregory B Martin; Steven D Tanksley; Rod A Wing
Map-based cloning in crop plants: tomato as a model system II. Isolation and characterization of a set of overlapping yeast artificial chromosomes encompassing the jointless locus.
Molecular & general genetics : MGG 1994;244(6):613-21.
1994: Rod A Wing; Hong-Bin Zhang; Steven D Tanksley
Map-based cloning in crop plants. Tomato as a model system: I. Genetic and physical mapping of jointless.
Molecular & general genetics : MGG 1994;242(6):681-8.
1993: Rod A Wing; Vipin K Rastogi; Hong-Bin Zhang; Andrew H Paterson; Steven D Tanksley
An improved method of plant megabase DNA isolation in agarose microbeads suitable for physical mapping and YAC cloning.
The Plant journal : for cell and molecular biology 1993;4(5):893-8.
1993: G L Wang; Rod A Wing; Andrew H Paterson
PCR amplification from single seeds, facilitating DNA marker-assisted breeding.
Nucleic acids research 1993;21(10):2527.
1991: J J Giovannoni; Rod A Wing; Martin Ganal; Steven D Tanksley
Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations.
Nucleic acids research 1991;19(23):6553-8.
1991: David Twell; J Yamaguchi; Rod A Wing; J Ushiba; Sheila McCormick
Promoter analysis of genes that are coordinately expressed during pollen development reveals pollen-specific enhancer sequences and shared regulatory elements.
Genes & development 1991;5(3):496-507.
1990: Rod A Wing; J Yamaguchi; S K Larabell; V M Ursin; Sheila McCormick
Molecular and genetic characterization of two pollen-expressed genes that have sequence similarity to pectate lyases of the plant pathogen Erwinia.
Plant molecular biology 1990;14(1):17-28.
1989: X W Deng; Rod A Wing; Wilhelm Gruissem
The chloroplast genome exists in multimeric forms.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(11):4156-60.
1989: David Twell; Rod A Wing; J Yamaguchi; Sheila McCormick
Isolation and expression of an anther-specific gene from tomato.
Molecular & general genetics : MGG 1989;217(2-3):240-5.
1988: S Matoba; J Fukayama; Rod A Wing; DM Ogrydziak
Intracellular precursors and secretion of alkaline extracellular protease of Yarrowia lipolytica.
Molecular and cellular biology 1988;8(11):4904-16.
1980: Rod A Wing; H Drew; T Takano; C Broka; S Tanaka; K Itakura; R E Dickerson
Crystal structure analysis of a complete turn of B-DNA.
Nature 1980;287(5784):755-8.