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James Wohlschlegel

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Josh R Beck; Isabelle Coppens; Connie Fung; Kurtis W Straub; Ajay A Vashisht; James Wohlschlegel; PJ Bradley
A Toxoplasma palmitoyl acyl transferase and the palmitoylated Armadillo Repeat protein TgARO govern apical rhoptry tethering and reveal a critical role for the rhoptries in host cell invasion but not egress.
Xiao-Fen Chen; Roberto Ferrari; Chengyang Huang; Siavash K Kurdistani; Lynn Lehmann; Justin J Lin; Robin McKee; Amber Mosley; Kathrin Plath; Ryan Schmidt; Ajay Vashisht; James Wohlschlegel; Michael Carey
Mediator and SAGA have distinct roles in Pol II preinitiation complex assembly and function.
Yu Sun; Jason Tchieu; Ajay A Vashisht; James Wohlschlegel; Lars Dreier
Voltage-dependent anion channels (VDACs) recruit Parkin to defective mitochondria to promote mitochondrial autophagy.

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2013: Josh R Beck; Isabelle Coppens; Connie Fung; Kurtis W Straub; Ajay A Vashisht; James Wohlschlegel; PJ Bradley
A Toxoplasma palmitoyl acyl transferase and the palmitoylated Armadillo Repeat protein TgARO govern apical rhoptry tethering and reveal a critical role for the rhoptries in host cell invasion but not egress.
PLoS pathogens 2013;9(2):e1003162.
2012: Xiao-Fen Chen; Roberto Ferrari; Chengyang Huang; Siavash K Kurdistani; Lynn Lehmann; Justin J Lin; Robin McKee; Amber Mosley; Kathrin Plath; Ryan Schmidt; Ajay Vashisht; James Wohlschlegel; Michael Carey
Mediator and SAGA have distinct roles in Pol II preinitiation complex assembly and function.
Cell reports 2012;2(5):1061-7.
2012: Yu Sun; Jason Tchieu; Ajay A Vashisht; James Wohlschlegel; Lars Dreier
Voltage-dependent anion channels (VDACs) recruit Parkin to defective mitochondria to promote mitochondrial autophagy.
The Journal of biological chemistry 2012;287(48):40652-60.
2012: Lynn Lehmann; Ajay A Vashisht; James Wohlschlegel; Roberto Ferrari; Siavash K Kurdistani; Michael Carey
Polycomb repressive complex 1 (PRC1) disassembles RNA polymerase II preinitiation complexes.
The Journal of biological chemistry 2012;287(43):35784-94.
2012: Minghua Nie; John Prudden; Ajay A Vashisht; James Wohlschlegel; John R Yates; Aaron Aslanian; Johanna Heideker; Michael N Boddy
Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions.
The Journal of biological chemistry 2012;287(35):29610-9.
2012: Oliver Stehling; Ajay A Vashisht; James Wohlschlegel; Zophonias O Jonsson; Judita Mascarenhas; Daili J A Netz; Antonio J Pierik; Tanu Sharma; Roland Lill
MMS19 assembles iron-sulfur proteins required for DNA metabolism and genomic integrity.
Science (New York, N.Y.) 2012;337(6091):195-9.
2012: Israel Ausin; Sophia D Española; Suhua Feng; Maxim V C Greenberg; Christopher J Hale; Tzuu-fen Lee; Blake C Meyers; Dinshaw J Patel; Dhirendra K Simanshu; Stacey A Simon; Ajay A Vashisht; James Wohlschlegel; Steven E Jacobsen
INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(22):8374-81.
2012: Elena Caro; Suhua Feng; Maxim V C Greenberg; Martin Groth; Hume Stroud; Ajay A Vashisht; James Wohlschlegel; Yana V Bernatavichute; Steve E Jacobsen
The SET-domain protein SUVR5 mediates H3K9me2 deposition and silencing at stimulus response genes in a DNA methylation-independent manner.
PLoS genetics 2012;8(10):e1002995.
2011: Justin J Lin; Kathrin Plath; Rupa Sridharan; Nancy Tran; Ajay A Vashisht; James Wohlschlegel; Giancarlo Bonora; Lynn W Lehmann; Michael Carey
Mediator coordinates PIC assembly with recruitment of CHD1.
Genes & development 2011;25(20):2198-209.
2011: Bhaskara Reddy Madina; Laurie K Read; James C Sacchettini; Sing-Hoi Sze; Ajay A Vashisht; James Wohlschlegel; Kurtis M Downey; Xinhua Ji; Gokulan Kuppan; Yu-He Liang; Jorge Cruz-Reyes
Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei.
RNA (New York, N.Y.) 2011;17(10):1821-30.
2011: Michael Oberholzer; Edwin A Saada; Michelle M Shimogawa; James Wohlschlegel; Zophonias O Jonsson; Gerasimos Langousis; HoangKim T Nguyen; Steven M Nguyen; Kent L Hill
Independent analysis of the flagellum surface and matrix proteomes provides insight into flagellum signaling in mammalian-infectious Trypanosoma brucei.
Molecular & cellular proteomics : MCP 2011;10(10):M111.010538.
2011: Etsuko Shibata; James Wohlschlegel; Tarek Abbas; Xinhua Huang; Anindya Dutta
Selective ubiquitylation of p21 and Cdt1 by UBCH8 and UBE2G ubiquitin-conjugating enzymes via the CRL4Cdt2 ubiquitin ligase complex.
Molecular and cellular biology 2011;31(15):3136-45.
2011: Julie A Law; Ajay A Vashisht; James Wohlschlegel; Steven E Jacobsen
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV.
PLoS genetics 2011;7(7):e1002195.
2011: John Prudden; J Jefferson P Perry; Minghua Nie; Ajay A Vashisht; Andrew S Arvai; Chiharu Hitomi; Grant Guenther; James Wohlschlegel; John A Tainer; Michael N Boddy
DNA repair and global sumoylation are regulated by distinct Ubc9 noncovalent complexes.
Molecular and cellular biology 2011;31(11):2299-310.
2011: Alias J Smith; Lorissa Chudnovsky; Augusto Simoes-Barbosa; Maria G Delgadillo-Correa; Zophonias O Jonsson; James Wohlschlegel; Patricia J Johnson
Novel core promoter elements and a cognate transcription factor in the divergent unicellular eukaryote Trichomonas vaginalis.
Molecular and cellular biology 2011;31(7):1444-58.
2011: Alba Duch; Gloria Palou; Zophonias O Jonsson; Roger Palou; Enrique Calvo; James Wohlschlegel; David G Quintana
A Dbf4 mutant contributes to bypassing the Rad53-mediated block of origins of replication in response to genotoxic stress.
The Journal of biological chemistry 2011;286(4):2486-91.
2010: Edlyn Wu; Caroline Thivierge; Mathieu Flamand; Géraldine Mathonnet; Ajay A Vashisht; James Wohlschlegel; Marc R Fabian; Nahum Sonenberg; Thomas F Duchaine
Pervasive and cooperative deadenylation of 3'UTRs by embryonic microRNA families.
Molecular cell 2010;40(4):558-70.
2010: Jaime Lopez-Mosqueda; Nancy L Maas; Zophonias O Jonsson; Lisa G Defazio-Eli; James Wohlschlegel; David P Toczyski
Damage-induced phosphorylation of Sld3 is important to block late origin firing.
Nature 2010;467(7314):479-83.
2010: Natalia de Miguel; Gil Lustig; Olivia Twu; Arnab Chattopadhyay; James Wohlschlegel; Patricia J Johnson
Proteome analysis of the surface of Trichomonas vaginalis reveals novel proteins and strain-dependent differential expression.
Molecular & cellular proteomics : MCP 2010;9(7):1554-66.
2010: Alfredo Hernandez; Bhaskara Reddy Madina; Kevin Ro; James Wohlschlegel; Belinda Willard; Mike T Kinter; Jorge Cruz-Reyes
REH2 RNA helicase in kinetoplastid mitochondria: ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding.
The Journal of biological chemistry 2010;285(2):1220-8.
2009: Brett Lomenick; Rui Hao; Nao Jonai; Randall M Chin; Mariam Aghajan; Sarah Warburton; Jianing Wang; Raymond P Wu; Fernando Gomez; Joseph A Loo; James Wohlschlegel; Thomas M Vondriska; Jerry Pelletier; Harvey R Herschman; Jon Clardy; Catherine F Clarke; Jing Huang
Target identification using drug affinity responsive target stability (DARTS).
Proceedings of the National Academy of Sciences of the United States of America 2009;106(51):21984-9.
2009: Genevieve Konopka; Jamee M Bomar; Kellen Winden; Giovanni Coppola; Zophonias O Jonsson; Fuying Gao; Sophia Peng; Todd M Preuss; James Wohlschlegel; Daniel Geschwind
Human-specific transcriptional regulation of CNS development genes by FOXP2.
Nature 2009;462(7270):213-7.
2009: Ajay A Vashisht; Kimberly B Zumbrennen; Xinhua Huang; David N Powers; Armando Durazo; Dahui Sun; Nimesh Bhaskaran; Anja Persson; Mathias Uhlen; Olle Sangfelt; Charles H. Spruck; Elizabeth A Leibold; James Wohlschlegel
Control of iron homeostasis by an iron-regulated ubiquitin ligase.
Science (New York, N.Y.) 2009;326(5953):718-21.
2009: Rui Zhou; Benjamin Czech; Julius Brennecke; Ravi Sachidanandam; James Wohlschlegel; Norbert Perrimon; Gregory J Hannon
Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform.
RNA (New York, N.Y.) 2009;15(10):1886-95.
2009: Marc R Fabian; Géraldine Mathonnet; Thomas Sundermeier; Hansruedi Mathys; Jakob T Zipprich; Yuri V Svitkin; Fabiola Rivas; Martin Jinek; James Wohlschlegel; Jennifer A Doudna; Chyi-Ying A Chen; Ann-Bin Shyu; John R Yates; Gregory J Hannon; Witold Filipowicz; Thomas F Duchaine; Nahum Sonenberg
Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation.
Molecular cell 2009;35(6):868-80.
2009: Vasily V Vagin; James Wohlschlegel; jun qu; Zophonias Jonsson; Xinhua Huang; Shinichiro Chuma; Angelique Girard; Ravi Sachidanandam; Gregory J Hannon; Alexei A Aravin
Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members.
Genes & development 2009;23(15):1749-62.
2009: Li-Chiou Chuang; Leonardo K Teixeira; James Wohlschlegel; Martha Henze; John R Yates; Juan Méndez; Steven I Reed
Phosphorylation of Mcm2 by Cdc7 promotes pre-replication complex assembly during cell-cycle re-entry.
Molecular cell 2009;35(2):206-16.
2009: Jesse R Zamudio; Bidyottam Mittra; Arnab Chattopadhyay; James Wohlschlegel; Nancy R Sturm; David A Campbell
Trypanosoma brucei spliced leader RNA maturation by the cap 1 2'-O-ribose methyltransferase and SLA1 H/ACA snoRNA pseudouridine synthase complex.
Molecular and cellular biology 2009;29(5):1202-11.
2009: James Wohlschlegel
Identification of SUMO-conjugated proteins and their SUMO attachment sites using proteomic mass spectrometry.
Methods in molecular biology (Clifton, N.J.) 2009;497():33-49.
2008: R A M de Bruin; Tatyana I Kalashnikova; Aaron S. Aslanian; James Wohlschlegel; Charly Chahwan; John R Yates; Paul Russell; Curt Wittenberg
DNA replication checkpoint promotes G1-S transcription by inactivating the MBF repressor Nrm1.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(32):11230-5.
2008: Augusto Simoes-Barbosa; Dionigia Meloni; James Wohlschlegel; Maria M Konarska; Patricia J Johnson
Spliceosomal snRNAs in the unicellular eukaryote Trichomonas vaginalis are structurally conserved but lack a 5'-cap structure.
RNA (New York, N.Y.) 2008;14(8):1617-31.
2008: Darien E Reed; Xinhua M Huang; James Wohlschlegel; Michael S Levine; Kate Senger
DEAF-1 regulates immunity gene expression in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(24):8351-6.
2008: Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
An endogenous small interfering RNA pathway in Drosophila.
Nature 2008;453(7196):798-802.
2008: Priya Bellare; Eliza C Small; Xinhua Huang; James Wohlschlegel; Jonathan P Staley; Erik J Sontheimer
A role for ubiquitin in the spliceosome assembly pathway.
Nature structural & molecular biology 2008;15(5):444-51.
2008: Brian L. Olson; M Benjamin Hock; Susanna Ekholm-Reed; James Wohlschlegel; Kumlesh K Dev; Anastasia Kralli; Steven I Reed
SCFCdc4 acts antagonistically to the PGC-1alpha transcriptional coactivator by targeting it for ubiquitin-mediated proteolysis.
Genes & development 2008;22(2):252-64.
2008: Renata Usaite; James Wohlschlegel; John D Venable; Sung K Park; Jens Nielsen; Lisbeth Olsson; John R Yates Iii
Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression saccharomyces cerevisiae strains: the comparison of two quantitative methods.
Journal of proteome research 2008;7(1):266-75.
2007: Wenge Zhu; Chinweike Ukomadu; Sudhakar Jha; Takeshi Senga; Suman Kumar Dhar; James Wohlschlegel; Leta K Nutt; Sally Kornbluth; Anindya Dutta
Mcm10 and And-1/CTF4 recruit DNA polymerase alpha to chromatin for initiation of DNA replication.
Genes & development 2007;21(18):2288-99.
2007: Akira Motoyama; Tao Xu; Cristian I Ruse; James Wohlschlegel; John R Yates
Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides.
Analytical chemistry 2007;79(10):3623-34.
2007: John D Venable; James Wohlschlegel; Daniel B McClatchy; Sung Kyu Park; John R Yates
Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer.
Analytical chemistry 2007;79(8):3056-64.
2006: Chantelle Sedgwick; Matthew Rawluk; James Decesare; Sheetal Raithatha; James Wohlschlegel; Paul Semchuk; Michael Ellison; John Yates; David Stuart
Saccharomyces cerevisiae Ime2 phosphorylates Sic1 at multiple PXS/T sites but is insufficient to trigger Sic1 degradation.
The Biochemical journal 2006;399(1):151-60.
2006: Grazia D Raffa; James Wohlschlegel; John R Yates; Michael N Boddy
SUMO-binding motifs mediate the Rad60-dependent response to replicative stress and self-association.
The Journal of biological chemistry 2006;281(38):27973-81.
2006: Robertus A M de Bruin; Tatyana I Kalashnikova; Charly Chahwan; W Hayes McDonald; James Wohlschlegel; John Yates; Paul Russell; Curt Wittenberg
Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback.
Molecular cell 2006;23(4):483-96.
2006: Victoria Martín; Charly Chahwan; Hui Gao; Veronique Blais; James Wohlschlegel; John R Yates; Clare H McGowan; Paul Russell
Sws1 is a conserved regulator of homologous recombination in eukaryotic cells.
The EMBO journal 2006;25(11):2564-74.
2006: Mira Ernkvist; Karin Aase; Chinwe Ukomadu; James Wohlschlegel; Ryan Blackman; Niina Veitonmäki; Anders Bratt; Anindya Dutta; Lars Holmgren
p130-angiomotin associates to actin and controls endothelial cell shape.
The FEBS journal 2006;273(9):2000-11.
2006: James Wohlschlegel; Erica S Johnson; Steven I Reed; John R Yates
Improved identification of SUMO attachment sites using C-terminal SUMO mutants and tailored protease digestion strategies.
Journal of proteome research 2006;5(4):761-70.
2006: Stephanie Pebernard; James Wohlschlegel; W Hayes McDonald; John R Yates; Michael N Boddy
The Nse5-Nse6 dimer mediates DNA repair roles of the Smc5-Smc6 complex.
Molecular and cellular biology 2006;26(5):1617-30.
2006: Thomas F Duchaine; James Wohlschlegel; Scott Kennedy; Yanxia Bei; Darryl Conte; Kaming Pang; Daniel R Brownell; Sandra Harding; Shohei Mitani; Gary Ruvkun; John R Yates; Craig C Mello
Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways.
Cell 2006;124(2):343-54.
2006: Rovshan G Sadygov; James Wohlschlegel; Sung Kyu Park; Tao Xu; John R Yates
Central limit theorem as an approximation for intensity-based scoring function.
Analytical chemistry 2006;78(1):89-95.
2005: Jidong Liu; Fabiola V Rivas; James Wohlschlegel; John R Yates; Roy Parker; Gregory J Hannon
A role for the P-body component GW182 in microRNA function.
Nature cell biology 2005;7(12):1261-6.
2005: Peter Kaiser; James Wohlschlegel
Identification of ubiquitination sites and determination of ubiquitin-chain architectures by mass spectrometry.
Methods in enzymology 2005;399():266-77.
2004: Zophonías O Jónsson; Sudhakar Jha; James Wohlschlegel; Anindya Dutta
Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex.
Molecular cell 2004;16(3):465-77.
2004: James Wohlschlegel; Erica S Johnson; Steven I Reed; John R Yates
Global analysis of protein sumoylation in Saccharomyces cerevisiae.
The Journal of biological chemistry 2004;279(44):45662-8.
2004: John D Venable; Meng-Qiu Dong; James Wohlschlegel; Andrew Dillin; John R Yates
Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra.
Nature methods 2004;1(1):39-45.
2004: Karin Flick; Ikram Ouni; James Wohlschlegel; Chrissy Capati; W Hayes McDonald; John R Yates; Peter Kaiser
Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain.
Nature cell biology 2004;6(7):634-41.
2003: James Wohlschlegel; John R Yates
Proteomics: where's Waldo in yeast?
Nature 2003;425(6959):671-2.
2002: James Wohlschlegel; Jeffery L Kutok; Andrew P Weng; Anindya Dutta
Expression of geminin as a marker of cell proliferation in normal tissues and malignancies.
The American journal of pathology 2002;161(1):267-73.
2002: James Wohlschlegel; Suman Kumar Dhar; Tatyana A Prokhorova; Anindya Dutta; Johannes C Walter
Xenopus Mcm10 binds to origins of DNA replication after Mcm2-7 and stimulates origin binding of Cdc45.
Molecular cell 2002;9(2):233-40.
2001: Suman Kumar Dhar; K Yoshida; Y Machida; P Khaira; B Chaudhuri; James Wohlschlegel; Michael Leffak; John Yates; Anindya Dutta
Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin.
Cell 2001;106(3):287-96.
2001: James Wohlschlegel; B T Dwyer; David Y Takeda; Anindya Dutta
Mutational analysis of the Cy motif from p21 reveals sequence degeneracy and specificity for different cyclin-dependent kinases.
Molecular and cellular biology 2001;21(15):4868-74.
2001: David Y Takeda; James Wohlschlegel; Anindya Dutta
A bipartite substrate recognition motif for cyclin-dependent kinases.
The Journal of biological chemistry 2001;276(3):1993-7.
2000: James Wohlschlegel; B T Dwyer; Suman Kumar Dhar; Christin Cvetic; Johannes C Walter; Anindya Dutta
Inhibition of eukaryotic DNA replication by geminin binding to Cdt1.
Science (New York, N.Y.) 2000;290(5500):2309-12.
1999: S Pinto; DG Quintana; P Smith; RM Mihalek; ZH Hou; S Boynton; C J Jones; M Hendricks; K Velinzon; James Wohlschlegel; R J Austin; William Stratton Lane; Tim Tully; Anindya Dutta
latheo encodes a subunit of the origin recognition complex and disrupts neuronal proliferation and adult olfactory memory when mutant.
Neuron 1999;23(1):45-54.
1996: A G Garza; R Biran; James Wohlschlegel; Michael D Manson
Mutations in motB suppressible by changes in stator or rotor components of the bacterial flagellar motor.
Journal of molecular biology 1996;258(2):270-85.