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Paul Wollenzien

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Chemicals & Drugs

Concepts & Ideas

Anatomy

Ribosomes

Living Beings

Escherichia coli

Phenomena

Ultraviolet Rays

Physiology

Genetic Transcription

Occupations

Photochemistry

Procedures

Polyacrylamide Gel Electrophoresis

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Network (preview)

Co-Publications
Name
6
Shapkina, Tatjana
5
Huggins, Bruce W.
5
Noah, James
4
Babin, P
3
Dolan, Michael
3
Nanda, Kavita
3
Juzumiene, DI
2
Karpova, Galina
2
Ghosh, Sujit
2
Graifer, Dmitri
1
Franzen, Stefan
1
Lappi, Simon
1
Szeberényi, József
1
gutell, robin

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Publications

TOP 3
Huggins Wayne; Ghosh Sujit K; Wollenzien Paul
Hydrogen bonding and packing density are factors most strongly connected to limiting sites of high flexibility in the 16S rRNA in the 30S ribosome.
Huggins Wayne; Shapkina Tatjana; Wollenzien Paul
Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking.
Huggins Wayne; Ghosh Sujit K; Nanda Kavita; Wollenzien Paul
Internucleotide movements during formation of 16 S rRNA-rRNA photocrosslinks and their connection to the 30 S subunit conformational dynamics.

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All Publications

2009: Huggins Wayne; Ghosh Sujit K; Wollenzien Paul
Hydrogen bonding and packing density are factors most strongly connected to limiting sites of high flexibility in the 16S rRNA in the 30S ribosome.
BMC structural biology 2009;9():49.
2007: Huggins Wayne; Shapkina Tatjana; Wollenzien Paul
Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking.
RNA (New York, N.Y.) 2007;13(11):2000-11.
2005: Huggins Wayne; Ghosh Sujit K; Nanda Kavita; Wollenzien Paul
Internucleotide movements during formation of 16 S rRNA-rRNA photocrosslinks and their connection to the 30 S subunit conformational dynamics.
Journal of molecular biology 2005;354(2):358-74.
2004: Nanda Kavita; Wollenzien Paul
Pattern of 4-thiouridine-induced cross-linking in 16S ribosomal RNA in the Escherichia coli 30S subunit.
Biochemistry 2004;43(28):8923-34.
2004: Huggins Wayne; Wollenzien Paul
A 16S rRNA-tRNA product containing a nucleotide phototrimer and specific for tRNA in the P/E hybrid state in the Escherichia coli ribosome.
Nucleic acids research 2004;32(22):6548-56.
2004: Shapkina Tatjana; Lappi Simon; Franzen Stefan; Wollenzien Paul
Efficiency and pattern of UV pulse laser-induced RNA-RNA cross-linking in the ribosome.
Nucleic acids research 2004;32(4):1518-26.
2003: Noah James W; Shapkina Tatjana G; Nanda Kavita; Huggins Wayne; Wollenzien Paul
Conformational change in the 16S rRNA in the Escherichia coli 70S ribosome induced by P/P- and P/E-site tRNAPhe binding.
Biochemistry 2003;42(49):14386-96.
2003: Zhirnov Oksana V; Wollenzien Paul
Action spectra for UV-light induced RNA-RNA crosslinking in 16S ribosomal RNA in the ribosome.
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology 2003;2(6):688-93.
2001: Juzumiene D; Shapkina T; Kirillov S; Wollenzien P
Short-range RNA-RNA crosslinking methods to determine rRNA structure and interactions.
Methods (San Diego, Calif.) 2001;25(3):333-43.
2001: Juzumiene D I; Wollenzien P
Arrangement of the central pseudoknot region of 16S rRNA in the 30S ribosomal subunit determined by site-directed 4-thiouridine crosslinking.
RNA (New York, N.Y.) 2001;7(1):71-84.
2001: Dolan M A; Babin P; Wollenzien P
Construction and analysis of base-paired regions of the 16S rRNA in the 30S ribosomal subunit determined by constraint satisfaction molecular modelling.
Journal of molecular graphics & modelling 2001;19(6):495-513.
2000: Noah J W; Shapkina T; Wollenzien P
UV-induced crosslinks in the 16S rRNAs of Escherichia coli, Bacillus subtilis and Thermus aquaticus and their implications for ribosome structure and photochemistry.
Nucleic acids research 2000;28(19):3785-92.
2000: Shapkina T G; Dolan M A; Babin P; Wollenzien P
Initiation factor 3-induced structural changes in the 30 S ribosomal subunit and in complexes containing tRNA(f)(Met) and mRNA.
Journal of molecular biology 2000;299(3):615-28.
2000: Juzumiene D I; Wollenzien P
Organization of the 16S rRNA around its 5' terminus determined by photochemical crosslinking in the 30S ribosomal subunit.
RNA (New York, N.Y.) 2000;6(1):26-40.
2000: Mundus D; Wollenzien P
Structure determination by directed photo-cross-linking in large RNA molecules with site-specific psoralen.
Methods in enzymology 2000;318():104-18.
1999: Babin P; Dolan M; Wollenzien P; Gutell R R
Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling.
RNA (New York, N.Y.) 1999;5(11):1430-9.
1999: Noah J W; Dolan M A; Babin P; Wollenzien P
Effects of tetracycline and spectinomycin on the tertiary structure of ribosomal RNA in the Escherichia coli 30 S ribosomal subunit.
The Journal of biological chemistry 1999;274(23):16576-81.
1998: Mundus D; Wollenzien P
Neighborhood of 16S rRNA nucleotides U788/U789 in the 30S ribosomal subunit determined by site-directed crosslinking.
RNA (New York, N.Y.) 1998;4(11):1373-85.
1998: Noah J W; Wollenzien P
Dependence of the 16S rRNA decoding region structure on Mg2+, subunit association, and temperature.
Biochemistry 1998;37(44):15442-8.
1997: Wilms C; Noah J W; Zhong D; Wollenzien P
Exact determination of UV-induced crosslinks in 16S ribosomal RNA in 30S ribosomal subunits.
RNA (New York, N.Y.) 1997;3(6):602-12.
1995: Ericson G; Minchew P; Wollenzien P
Structural changes in base-paired region 28 in 16 S rRNA close to the decoding region of the 30 S ribosomal subunit are correlated to changes in tRNA binding.
Journal of molecular biology 1995;250(4):407-19.
1995: Juzumiene D I; Shapkina T G; Wollenzien P
Distribution of cross-links between mRNA analogues and 16 S rRNA in Escherichia coli 70 S ribosomes made under equilibrium conditions and their response to tRNA binding.
The Journal of biological chemistry 1995;270(21):12794-800.
1995: Wollenzien P; Juzumiene D; Shapkina T; Minchew P
Three dimensional model for the 16S ribosomal RNA that incorporates information for the mRNA track.
Nucleic acids symposium series 1995;(33):76-8.
1995: Minchew P; Joy S; Bhangu R; Wollenzien P
Three dimensional model for the 16S ribosomal RNA in the Escherichia coli ribosome.
Nucleic acids symposium series 1995;(33):68-9.
1994: Wilms C; Wollenzien P
Purification of RNA from polyacrylamide gels by ultracentrifugation.
Analytical biochemistry 1994;221(1):204-5.
1994: Graifer D M; Juzumiene D I; Karpova G G; Wollenzien P
mRNA binding track in the human 80S ribosome for mRNA analogues randomly substituted with 4-thiouridine residues.
Biochemistry 1994;33(20):6201-6.
1994: Graifer D M; Juzumiene D I; Wollenzien P; Karpova G G
Cross-linking of mRNA analogues containing 4-thiouridine residues on the 3'- or 5'-side of the coding triplet to the mRNA binding center of the human ribosome.
Biochemistry 1994;33(13):3878-84.
1994: Bhangu R; Juzumiene D; Wollenzien P
Arrangement of messenger RNA on Escherichia coli ribosomes with respect to 10 16S rRNA cross-linking sites.
Biochemistry 1994;33(10):3063-70.
1992: Bhangu R; Wollenzien P
The mRNA binding track in the Escherichia coli ribosome for mRNAs of different sequences.
Biochemistry 1992;31(25):5937-44.
1991: Wollenzien P; Expert-Bezançon A; Favre A
Sites of contact of mRNA with 16S rRNA and 23S rRNA in the Escherichia coli ribosome.
Biochemistry 1991;30(7):1788-95.
1990: Teare J; Wollenzien P
The structure of a pre-mRNA molecule in solution determined with a site directed cross-linking reagent.
Nucleic acids research 1990;18(4):855-64.
1989: Teare J; Wollenzien P L
Structures of human and rabbit beta-globin precursor messenger RNAs in solution.
Biochemistry 1989;28(15):6208-19.
1989: Ericson G; Chevli K; Wollenzien P
Structure of synthetic unmethylated 16S ribosomal RNA as purified RNA and in reconstituted 30S ribosomal subunits.
Biochemistry 1989;28(15):6446-54.
1989: Teare J; Wollenzien P
Specificity of site directed psoralen addition to RNA.
Nucleic acids research 1989;17(9):3359-72.
1989: Ericson G; Wollenzien P
An RNA secondary structure switch between the inactive and active conformations of the Escherichia coli 30 S ribosomal subunit.
The Journal of biological chemistry 1989;264(1):540-5.
1988: Ericson G; Wollenzien P
Use of reverse transcription to determine the exact locations of psoralen photochemical crosslinks in RNA.
Analytical biochemistry 1988;174(1):215-23.
1987: Wollenzien P L; Goswami P; Teare J; Szeberenyi J; Goldenberg C J
The secondary structure of a messenger RNA precursor probed with psoralen is melted in an in vitro splicing reaction.
Nucleic acids research 1987;15(22):9279-98.
1987: Szeberényi J; Wollenzien P L; Goldenberg C J
Inhibition of in vitro splicing of a mouse insulin pre-mRNA by covalent cross-links in the intron region.
Acta biologica Hungarica 1987;38(2):267-77.
1985: Wollenzien P L; Murphy R F; Cantor C R; Expert-Bezançon A; Hayes D H
Structure of the Escherichia coli 16 S ribosomal RNA. Psoralen crosslinks and N-acetyl-N'-(p-glyoxylylbenzoyl)cystamine crosslinks detected by electron microscopy.
Journal of molecular biology 1985;184(1):67-80.
1985: Expert-Bezançon A; Wollenzien P L
Three-dimensional arrangement of the Escherichia coli 16 S ribosomal RNA.
Journal of molecular biology 1985;184(1):53-66.

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