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Limsoon Wong

Research Profile

Occupations

Computational Biology

Concepts & Ideas

Chemicals & Drugs

Proteins

Activities & Behaviors

Procedures

Phenomena

Protein Binding

Geographic Areas

Singapore

Co-author Network

Publications

TOP 3
Wilson Wen Bin Goh; Marek Sergot; Judy Cg Sng; Limsoon Wong
Comparative network-based recovery analysis and proteomic profiling of neurological changes in valproic Acid-treated mice.
Jingjing Jin; Jun Liu; Huan Wang; Limsoon Wong; Nam-Hai Chua
PLncDB: plant long non-coding RNA database.
Limsoon Wong
An introduction to some new results in bioinformatics and computational biology.

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All Publications

2013: Wilson Wen Bin Goh; Marek Sergot; Judy Cg Sng; Limsoon Wong
Comparative network-based recovery analysis and proteomic profiling of neurological changes in valproic Acid-treated mice.
Journal of proteome research 2013;12(5):2116-27.
2013: Jingjing Jin; Jun Liu; Huan Wang; Limsoon Wong; Nam-Hai Chua
PLncDB: plant long non-coding RNA database.
Bioinformatics (Oxford, England) 2013;29(8):1068-71.
2013: Limsoon Wong
An introduction to some new results in bioinformatics and computational biology.
Journal of bioinformatics and computational biology 2013;11(2):1301001.
2013: Hufeng Zhou; Jingjing Jin; Limsoon Wong
Progress in computational studies of host-pathogen interactions.
Journal of bioinformatics and computational biology 2013;11(2):1230001.
2013: Wilson Wen Bin Goh; Hong Sang Low; Marek Sergot; Mengyuan Fan; Limsoon Wong
Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies.
BMC genomics 2013;14():35.
2012: Qian Liu; Limsoon Wong; Jinyan Li
Z-score biological significance of binding hot spots of protein interfaces by using crystal packing as the reference state.
Biochimica et biophysica acta 2012;1824(12):1457-67.
2012: Julian Lai; Laurent Pieuchot; Vignesh Raman; Monika Tjota; Limsoon Wong; Daiwen Yang; Karthik Balakrishna Chandrababu; Chuan Hock Koh; Gregory Jedd
Intrinsically disordered proteins aggregate at fungal cell-to-cell channels and regulate intercellular connectivity.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(39):15781-6.
2012: Min Wu; Chee Keong Kwoh; Xiao-Li Li; See-Kiong Ng; Limsoon Wong
Discovery of protein complexes with core-attachment structures from Tandem Affinity Purification (TAP) data.
Journal of computational biology : a journal of computational molecular cell biology 2012;19(9):1027-42.
2012: Limsoon Wong
A short introduction to some recent progress in phylogenetic network reconstruction, genome mapping, gene expression analysis, molecular dynamic simulation, and other problems in bioinformatics.
Journal of bioinformatics and computational biology 2012;10(4):1203002.
2012: Peng Chen; Limsoon Wong; Jinyan Li
Detection of outlier residues for improving interface prediction in protein heterocomplexes.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2012;9(4):1155-65.
2012: Rajesh Chowdhary; Difeng Dong; Ingrid Glurich; Jingjing Jin; Jun S Liu; Sameer K Mathur; Vipin Narang; Giulio Pavesi; Benjamin A Raby; Sin Lam Tan; Scott T Weiss; Limsoon Wong; Arthur Burkart; Vladimir Bajic
A database of annotated promoters of genes associated with common respiratory and related diseases.
American journal of respiratory cell and molecular biology 2012;47(1):112-9.
2012: Wilson Wen Bin Goh; Yie Hou Lee; Zubaidah M Ramdzan; Marek Sergot; Maxey Chung; Limsoon Wong
Proteomics signature profiling (PSP): a novel contextualization approach for cancer proteomics.
Journal of proteome research 2012;11(3):1571-81.
2012: Wilson Wen Bin Goh; Hirotaka Oikawa; Marek Sergot; Judy Chia Ghee Sng; Limsoon Wong
The role of miRNAs in complex formation and control.
Bioinformatics (Oxford, England) 2012;28(4):453-6.
2012: Wilson Wen Bin Goh; Yie H Lee; Maxey Chung; Limsoon Wong
How advancement in biological network analysis methods empowers proteomics.
Proteomics 2012;12(4-5):550-63.
2012: Kevin Lim; Limsoon Wong
CMPF: class-switching minimized pathfinding in metabolic networks.
BMC bioinformatics 2012;13 Suppl 17():S17.
2012: Chuan Hock Koh; Sucheendra K Palaniappan; P S Thiagarajan; Limsoon Wong
Improved statistical model checking methods for pathway analysis.
BMC bioinformatics 2012;13 Suppl 17():S15.
2012: Chuan Hock Koh; Limsoon Wong
Embracing noise to improve cross-batch prediction accuracy.
BMC systems biology 2012;6 Suppl 2():S3.
2012: Hufeng Zhou; Jingjing Jin; Michal Wozniak; Bo Yi; Haojun Zhang; Limsoon Wong
IntPath--an integrated pathway gene relationship database for model organisms and important pathogens.
BMC systems biology 2012;6 Suppl 2():S2.
2012: Chern Han Yong; Hon Nian Chua; Guimei Liu; Limsoon Wong
Supervised maximum-likelihood weighting of composite protein networks for complex prediction.
BMC systems biology 2012;6 Suppl 2():S13.
2012: Michal Wozniak; Jerzy Tiuryn; Limsoon Wong
An approach to identifying drug resistance associated mutations in bacterial strains.
BMC genomics 2012;13 Suppl 7():S23.
2012: Liang Zhao; Steven C H Hoi; Lanyuan Lu; Limsoon Wong; Jinyan Li
B-cell epitope prediction through a graph model.
BMC bioinformatics 2012;13 Suppl 17():S20.
2012: Liang Zhao; Limsoon Wong; Tobias Hamp; Steven C H Hoi; Jinyan Li
Structural and functional analysis of multi-interface domains.
PloS one 2012;7(12):e50821.
2012: Zhenhua Li; Limsoon Wong; Longbing Cao; Ying He; Jinyan Li
Conservation of water molecules in protein binding interfaces.
International journal of bioinformatics research and applications 2012;8(3-4):228-44.
2012: Wilson Wen Bin Goh; Yie Hou Lee; Zubaidah M Ramdzan; Maxey C M Chung; Limsoon Wong; Marek Sergot
A network-based maximum link approach towards MS identifies potentially important roles for undetected ARRB1/2 and ACTB in liver cancer progression.
International journal of bioinformatics research and applications 2012;8(3-4):155-70.
2012: Zhenhua Li; Limsoon Wong; Ying He; Jinyan Li
Progressive dry-core-wet-rim hydration trend in a nested-ring topology of protein binding interfaces.
BMC bioinformatics 2012;13():51.
2012: Tianyou Zhang; Xiuju Fu; Chee Keong Kwoh; Gary Kee Khoon Lee; Michael Lees; Stefan Ma; Limsoon Wong; Gaoxi Xiao; Terence Hung
Evaluating temporal factors in combined interventions of workforce shift and school closure for mitigating the spread of influenza.
PloS one 2012;7(3):e32203.
2011: Michał Woźniak; Limsoon Wong; Jerzy Tiuryn
CAMBerVis: visualization software to support comparative analysis of multiple bacterial strains.
Bioinformatics (Oxford, England) 2011;27(23):3313-4.
2011: Donny Soh; Difeng Dong; Yike Guo; Limsoon Wong
Finding consistent disease subnetworks across microarray datasets.
BMC bioinformatics 2011;12 Suppl 13():S15.
2011: Hufeng Zhou; Limsoon Wong
Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.
BMC genomics 2011;12 Suppl 3():S20.
2011: Yue Wang; Mengling Feng; Guimei Liu; Limsoon Wong
An empirical comparison of several recent epistatic interaction detection methods.
Bioinformatics (Oxford, England) 2011;27(21):2936-43.
2011: Liang Zhao; Limsoon Wong; Jinyan Li
Antibody-specified B-cell epitope prediction in line with the principle of context-awareness.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2011;8(6):1483-94.
2011: Qian Liu; Chinh T T Su; Limsoon Wong; Steven C H Hoi; Chee Keong Kwoh; Zhenhua Li; Jinyan Li
Structural analysis of the hot spots in the binding between H1N1 HA and the 2D1 antibody: do mutations of H1N1 from 1918 to 2009 affect much on this binding?
Bioinformatics (Oxford, England) 2011;27(18):2529-36.
2011: Limsoon Wong
Brief introduction to some new papers on lateral transfer reconstruction, drug candidate screening, disease gene identification, and other results.
Journal of bioinformatics and computational biology 2011;9(4):v-vii.
2011: Wilson Wen Bin Goh; Yie Hou Lee; Ramdzan M Zubaidah; Jingjing Jin; Difeng Dong; Qingsong Lin; Maxey C M Chung; Limsoon Wong
Network-based pipeline for analyzing MS data: an application toward liver cancer.
Journal of proteome research 2011;10(5):2261-72.
2011: Tianyou Zhang; Xiuju Fu; Chee Keong Kwoh; Gaoxi Xiao; Limsoon Wong; Stefan Ma; Harold Soh; Gary Kee Khoon Lee; Terence Hung; Michael Lees
Temporal factors in school closure policy for mitigating the spread of influenza.
Journal of public health policy 2011;32(2):180-97.
2011: Zhengkui Wang; Yue Wang; Kian-Lee Tan; Limsoon Wong; Divyakant Agrawal
eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study.
Bioinformatics (Oxford, England) 2011;27(8):1045-51.
2011: Wen Lee Tan; Bhaskar Bhattacharya; Marie Loh; Indirikumar Balasubramanian; Mohamed Akram; Difeng Dong; Limsoon Wong; Bhavin Thakkar; Manuel Salto-Tellez; Ross A Soo; Iduna Fichtner; Barry Iacopetta; Richie Soong
Low cytosine triphosphate synthase 2 expression renders resistance to 5-fluorouracil in colorectal cancer.
Cancer biology & therapy 2011;11(6):599-608.
2011: Chuan Hock Koh; Masao Nagasaki; Ayumu Saito; Chen Li; Limsoon Wong; Satoru Miyano
MIRACH: efficient model checker for quantitative biological pathway models.
Bioinformatics (Oxford, England) 2011;27(5):734-5.
2011: Limsoon Wong
Recent advances on structural bioinformatics, cell motion simulation, functional module identification, copy number variation, and protease substrate prediction and some critical comments on HMMER2.
Journal of bioinformatics and computational biology 2011;9(1):v-viii.
2011: Michal Wozniak; Limsoon Wong; Jerzy Tiuryn
CAMBer: an approach to support comparative analysis of multiple bacterial strains.
BMC genomics 2011;12 Suppl 2():S6.
2011: Zhenhua Li; Limsoon Wong; Jinyan Li
DBAC: a simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts.
BMC systems biology 2011;5 Suppl 1():S5.
2010: Li Lin; Limsoon Wong; Tze-Yun Leong; Poh San Lai
Efficient mining of haplotype patterns for linkage disequilibrium mapping.
Journal of bioinformatics and computational biology 2010;8 Suppl 1():127-46.
2010: Limsoon Wong
New results in biological sequence analysis, complex gene–disease association, qPCR calculation, and biological text mining.
Journal of bioinformatics and computational biology 2010;8(5):v-ii.
2010: Chuan Hock Koh; Masao Nagasaki; Ayumu Saito; Limsoon Wong; Satoru Miyano
DA 1.0: parameter estimation of biological pathways using data assimilation approach.
Bioinformatics (Oxford, England) 2010;26(14):1794-6.
2010: D Rebholz-Schuhmann; Nigel Collier; Jong C Park; Limsoon Wong
Wrestling with biomedical research results: language resources and literature analysis. Introduction.
Journal of bioinformatics and computational biology 2010;8(1):129-30.
2010: Mahnaz Habibi; Changiz Eslahchi; Limsoon Wong
Protein complex prediction based on k-connected subgraphs in protein interaction network.
BMC systems biology 2010;4():129.
2010: Donny Soh; Difeng Dong; Yike Guo; Limsoon Wong
Consistency, comprehensiveness, and compatibility of pathway databases.
BMC bioinformatics 2010;11():449.
2010: Rajesh Chowdhary; Vladimir B Bajic; Difeng Dong; Limsoon Wong; Jun S Liu
Genome-wide analysis of regions similar to promoters of histone genes.
BMC systems biology 2010;4 Suppl 1():S4.
2010: Guimei Liu; Yue Wang; Limsoon Wong
FastTagger: an efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium.
BMC bioinformatics 2010;11():66.
2009: Chuan Hock Koh; Sharene Lin; Gregory Jedd; Limsoon Wong
Sirius PSB: a generic system for analysis of biological sequences.
Journal of bioinformatics and computational biology 2009;7(6):973-90.
2009: Frank Eisenhaber; Chee-Keong Kwoh; See-Kiong Ng; Wing-Kin Sung; Wing-King Sung; Limsoon Wong
Brief overview of bioinformatics activities in Singapore.
PLoS computational biology 2009;5(9):e1000508.
2009: Guimei Liu; Limsoon Wong; Hon Nian Chua
Complex discovery from weighted PPI networks.
Bioinformatics (Oxford, England) 2009;25(15):1891-7.
2009: Hon Nian Chua; Willy Hugo; Guimei Liu; Xiaoli Li; Limsoon Wong; See-Kiong Ng
A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge.
Annals of the New York Academy of Sciences 2009;1158():224-33.
2008: Hon Nian Chua; Limsoon Wong
Increasing the reliability of protein interactomes.
Drug discovery today 2008;13(15-16):652-8.
2008: Hon Nian Chua; Kang Ning; Wing-Kin Sung; Kang Ning; Limsoon Wong
Using indirect protein-protein interactions for protein complex prediction.
Journal of bioinformatics and computational biology 2008;6(3):435-66.
2008: Guimei Liu; Jinyan Li; Limsoon Wong
Assessing and predicting protein interactions using both local and global network topological metrics.
Genome informatics. International Conference on Genome Informatics 2008;21():138-49.
2007: Hon Nian Chua; Wing-Kin Sung; Limsoon Wong
An efficient strategy for extensive integration of diverse biological data for protein function prediction.
Bioinformatics (Oxford, England) 2007;23(24):3364-73.
2007: See-Kiong Ng; Limsoon Wong
Genome Informatics 2007. Preface.
Genome informatics. International Conference on Genome Informatics 2007;19():ix.
2007: Chuan Hock Koh; Limsoon Wong
Recognition of polyadenylation sites from Arabidopsis genomic sequences.
Genome informatics. International Conference on Genome Informatics 2007;19():73-82.
2007: Hon Nian Chua; Kang Ning; Wing-Kin Sung; Kang Ning; Limsoon Wong
Using indirect protein-protein interactions for protein complex predication.
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 2007;6():97-109.
2007: Li Lin; Limsoon Wong; Tze-Yun Leong; Pohsan Lai
ECTracker--an efficient algorithm for haplotype analysis and classification.
Studies in health technology and informatics 2007;129(Pt 2):1270-4.
2007: Hon Nian Chua; Wing-Kin Sung; Limsoon Wong
Using indirect protein interactions for the prediction of Gene Ontology functions.
BMC bioinformatics 2007;8 Suppl 4():S8.
2006: Rajesh Chowdhary; Sin Lam Tan; R Ayesha Ali; Brent Boerlage; Limsoon Wong; Vladimir Bajic
Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures.
Bioinformatics (Oxford, England) 2006;22(18):2310-2.
2006: Hon Nian Chua; Wing-Kin Sung; Limsoon Wong
Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions.
Bioinformatics (Oxford, England) 2006;22(13):1623-30.
2006: Haiquan Li; Jinyan Li; Limsoon Wong
Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.
Bioinformatics (Oxford, England) 2006;22(8):989-96.
2006: Rajesh Chowdhary; Limsoon Wong; Vladimir Bajic
Finding functional promoter motifs by computational methods: a word of caution.
International journal of bioinformatics research and applications 2006;2(3):282-8.
2006: Jin Chen; Hon Nian Chua; Wynne Hsu; Mong Li Lee; See-Kiong Ng; Rintaro Saito; Wing-Kin Sung; Limsoon Wong
Increasing confidence of protein-protein interactomes.
Genome informatics. International Conference on Genome Informatics 2006;17(2):284-97.
2005: Huiqing Liu; Jinyan Li; Limsoon Wong
Use of extreme patient samples for outcome prediction from gene expression data.
Bioinformatics (Oxford, England) 2005;21(16):3377-84.
2005: Huiqing Liu; Hao Han; Jinyan Li; Limsoon Wong
DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences.
Bioinformatics (Oxford, England) 2005;21(5):671-3.
2004: Huiqing Liu; Jinyan Li; Limsoon Wong
Selection of patient samples and genes for outcome prediction.
Proceedings / IEEE Computational Systems Bioinformatics Conference, CSB. IEEE Computational Systems Bioinformatics Conference 2004;():382-92.
2004: Huiqing Liu; Hao Han; Jinyan Li; Limsoon Wong
Using amino acid patterns to accurately predict translation initiation sites.
In silico biology 2004;4(3):255-69.
2003: Jinyan Li; Huiqing Liu; See-Kiong Ng; Limsoon Wong
Discovery of significant rules for classifying cancer diagnosis data.
Bioinformatics (Oxford, England) 2003;19 Suppl 2():ii93-102.
2003: Huiqing Liu; Limsoon Wong
Data mining tools for biological sequences.
Journal of bioinformatics and computational biology 2003;1(1):139-67.
2003: Huiqing Liu; Hao Han; Jinyan Li; Limsoon Wong
An in-silico method for prediction of polyadenylation signals in human sequences.
Genome informatics. International Conference on Genome Informatics 2003;14():84-93.
2003: Jinyan Li; Huiqing Liu; James R Downing; A E J Yeoh; Limsoon Wong
Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients.
Bioinformatics (Oxford, England) 2003;19(1):71-8.
2002: Limsoon Wong
Technologies for integrating biological data.
Briefings in bioinformatics 2002;3(4):389-404.
2002: Lynette Hirschman; Jong C Park; Junichi Tsujii; Limsoon Wong; Cathy H Wu
Accomplishments and challenges in literature data mining for biology.
Bioinformatics (Oxford, England) 2002;18(12):1553-61.
2002: Lance D Miller; Philip M Long; Limsoon Wong; Sayan Mukherjee; Lisa M McShane; Edison Liu
Optimal gene expression analysis by microarrays.
Cancer cell 2002;2(5):353-61.
2002: Limsoon Wong
Gaps in text-based knowledge discovery for biology.
Drug discovery today 2002;7(17):897-8.
2002: Jinyan Li; Limsoon Wong
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns.
Bioinformatics (Oxford, England) 2002;18(5):725-34.
2002: Eng-Juh Yeoh; Mary Elizabeth Ross; Sheila A Shurtleff; W Kent Williams; Divyen Patel; Rami Mahfouz; Frederick G. Behm; Susana C Raimondi; Mary Relling; Anami Patel; Cheng Cheng; Dario Campana; Dawn Wilkins; Xiaodong Zhou; Jinyan Li; Huiqing Liu; Ching-Hon Pui; William Evans; Clayton W Naeve; Limsoon Wong; James R Downing
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling.
Cancer cell 2002;1(2):133-43.
2002: Fanfan Zeng; Roland H C Yap; Limsoon Wong
Using feature generation and feature selection for accurate prediction of translation initiation sites.
Genome informatics. International Conference on Genome Informatics 2002;13():192-200.
2002: Huiqing Liu; Jinyan Li; Limsoon Wong
A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns.
Genome informatics. International Conference on Genome Informatics 2002;13():51-60.
2002: Christian Schönbach; Judice L Y Koh; Darren R Flower; Limsoon Wong; Vladimir Brusic
FIMM, a database of functional molecular immunology: update 2002.
Nucleic acids research 2002;30(1):226-9.
2001: J Li; Limsoon Wong
Emerging patterns and gene expression data.
Genome informatics. International Conference on Genome Informatics 2001;12():3-13.
2001: Limsoon Wong
PIES, a protein interaction extraction system.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():520-31.
2000: Christian Schönbach; Judice L Y Koh; X Sheng; Limsoon Wong; Vladimir Brusic
FIMM, a database of functional molecular immunology.
Nucleic acids research 2000;28(1):222-4.
1998: Prasanna R Kolatkar; Meena Kishore Sakharkar; T C Roderic; B K Kiong; Limsoon Wong; Tin Wee Tan; Subramanian Subbiah
Integration of bioInformatics tools at the National University of Singapore (NUS).
Studies in health technology and informatics 1998;52 Pt 1():356-60.
1998: O P Wu; K T Seow; Limsoon Wong; S Y Chung; Subramanian Subbiah
From sequence to structure to literature: the protocol approach to bioinformation.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():747-58.
1998: Prasanna R Kolatkar; Meena Kishore Sakharkar; C R Tse; B K Kiong; Limsoon Wong; Tin Wee Tan; Subramanian Subbiah
Development of software tools at BioInformatics Centre (BIC) at the National University of Singapore (NUS).
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():735-46.