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Sunney Xie

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TOP 3
J Christof M Gebhardt; Tom Maniatis; Rahul Roy; David M Suter; Srinjan Basu; Alec R Chapman; Ziqing W Zhao; X Sunney Xie
Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.
Sangjin Kim; Xiao-dong Su; Yujie Sun; Siyuan Wang; Erik Broströmer; Shasha Chong; Yi Qin Gao; Hao Ge; Chan Gu; Jianshi Jin; Dong Xing; Lijiang Yang; X Sunney Xie
Probing allostery through DNA.
Paul C Blainey; S Jane Flint; Vito Graziano; William J McGrath; Ana J Pérez-Berná; Carmen San Martín; X Sunney Xie; Walter F Mangel
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.

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All Publications

2013: J Christof M Gebhardt; Tom Maniatis; Rahul Roy; David M Suter; Srinjan Basu; Alec R Chapman; Ziqing W Zhao; X Sunney Xie
Single-molecule imaging of transcription factor binding to DNA in live mammalian cells.
Nature methods 2013;10(5):421-6.
2013: Sangjin Kim; Xiao-dong Su; Yujie Sun; Siyuan Wang; Erik Broströmer; Shasha Chong; Yi Qin Gao; Hao Ge; Chan Gu; Jianshi Jin; Dong Xing; Lijiang Yang; X Sunney Xie
Probing allostery through DNA.
Science (New York, N.Y.) 2013;339(6121):816-9.
2013: Paul C Blainey; S Jane Flint; Vito Graziano; William J McGrath; Ana J Pérez-Berná; Carmen San Martín; X Sunney Xie; Walter F Mangel
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates.
The Journal of biological chemistry 2013;288(3):2092-102.
2013: Vito Graziano; Guobin Luo; Paul C Blainey; S Jane Flint; William J McGrath; Ana J Pérez-Berná; Carmen San Martín; X Sunney Xie; Walter F Mangel
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction.
The Journal of biological chemistry 2013;288(3):2068-80.
2013: Vito Graziano; Urs F Greber; Guobin Luo; Paul C Blainey; Paul Freimuth; William J McGrath; M Suomalainen; X Sunney Xie; Walter F Mangel
Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.
The Journal of biological chemistry 2013;288(3):2059-67.
2013: Lingjie Kong; Christian W Freudiger; Dan Fu; Gary R Holtom; Minbiao Ji; X Sunney Xie
Multicolor stimulated Raman scattering microscopy with a rapidly tunable optical parametric oscillator.
Optics letters 2013;38(2):145-7.
2012: Sijia Lu; Jie Qiao; Fuchou Tang; Fan Bai; Alec R Chapman; Wei Fan; Xuesong Hu; Jinsen Li; Ruiqiang Li; Liya Xu; Liying Yan; Mingyu Yang; Ping Zhu; Chenghang Zong; X Sunney Xie
Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing.
Science (New York, N.Y.) 2012;338(6114):1627-30.
2012: Chenghang Zong; Alec R Chapman; Sijia Lu; X Sunney Xie
Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.
Science (New York, N.Y.) 2012;338(6114):1622-6.
2012: Christian W Freudiger; Minbiao Ji; Santosh Kesari; Daniel A Orringer; Linda Ottoboni; Rolf Pfannl; Martin A Philbert; Brian G Saar; Oren Sagher; John R Sims; Christian Waeber; X Sunney Xie; Xiaoyin Xu; Wei Ying; Qing Zeng; Ying Wei; Philip L De Jager; Geoffrey S Young
Multicolored stain-free histopathology with coherent Raman imaging.
Laboratory investigation; a journal of technical methods and pathology 2012;92(10):1492-502.
2012: Xu Zhang; Srinjan Basu; Joseph R Daniele; Christian W Freudiger; Dan Fu; Gary R Holtom; Maarten B J Roeffaers; X Sunney Xie
Label-free live-cell imaging of nucleic acids using stimulated Raman scattering microscopy.
Chemphyschem : a European journal of chemical physics and physical chemistry 2012;13(4):1054-9.
2012: Katsuyuki Shiroguchi; Peter A Sims; Tony Z Jia; X Sunney Xie
Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(4):1347-52.
2011: Wenqin Wang; X Sunney Xie; Chongyi Chen; Gene-Wei Li; Xiaowei Zhuang
Chromosome organization by a nucleoid-associated protein in live bacteria.
Science (New York, N.Y.) 2011;333(6048):1445-9.
2011: Gene-Wei Li; X Sunney Xie
Central dogma at the single-molecule level in living cells.
Nature 2011;475(7356):308-15.
2011: Brian G Saar; Christian W Freudiger; Richard S Johnston; X Sunney Xie; Eric J Seibel
Coherent Raman scanning fiber endoscopy.
Optics letters 2011;36(13):2396-8.
2011: Peter A Sims; Haifeng Duan; William J Greenleaf; X Sunney Xie
Fluorogenic DNA sequencing in PDMS microreactors.
Nature methods 2011;8(7):575-80.
2011: Brian G Saar; L Rodrigo Contreras-Rojas; X Sunney Xie; Richard H Guy
Imaging drug delivery to skin with stimulated Raman scattering microscopy.
Molecular pharmaceutics 2011;8(3):969-75.
2011: Christian W Freudiger; Maarten B J Roeffaers; Xu Zhang; Brian G Saar; Wei Min; X Sunney Xie
Optical heterodyne-detected Raman-induced Kerr effect (OHD-RIKE) microscopy.
The journal of physical chemistry. B 2011;115(18):5574-81.
2011: Maarten B J Roeffaers; Xu Zhang; Christian W Freudiger; Brian G Saar; Marjolein van Ruijven; Gerard van Dalen; Chunhong Xiao; X Sunney Xie
Label-free imaging of biomolecules in food products using stimulated Raman microscopy.
Journal of biomedical optics 2011;16(2):021118.
2011: Jaime Imitola; Daniel Côté; Stine Rasmussen; X Sunney Xie; Yingru Liu; Tanuja Chitnis; Richard L Sidman; Charles P Lin; Samia J Khoury
Multimodal coherent anti-Stokes Raman scattering microscopy reveals microglia-associated myelin and axonal dysfunction in multiple sclerosis-like lesions in mice.
Journal of biomedical optics 2011;16(2):021109.
2011: Eric O Potma; Ji-Xin Cheng; X Sunney Xie
Coherent Raman imaging techniques and biomedical applications.
Journal of biomedical optics 2011;16(2):021101.
2011: Meng C Wang; Wei Min; Christian W Freudiger; Gary Ruvkun; X Sunney Xie
RNAi screening for fat regulatory genes with SRS microscopy.
Nature methods 2011;8(2):135-8.
2011: Wei Min; Christian W Freudiger; Sijia Lu; X Sunney Xie
Coherent nonlinear optical imaging: beyond fluorescence microscopy.
Annual review of physical chemistry 2011;62():507-30.
2010: Brian G Saar; Christian W Freudiger; Jay Reichman; C Michael Stanley; Gary R Holtom; X Sunney Xie
Video-rate molecular imaging in vivo with stimulated Raman scattering.
Science (New York, N.Y.) 2010;330(6009):1368-70.
2010: Ke Wang; Christian W Freudiger; Jennifer H Lee; Brian G Saar; X Sunney Xie; Chris Xu
Synchronized time-lens source for coherent Raman scattering microscopy.
Optics express 2010;18(23):24019-24.
2010: Maarten B J Roeffaers; Xu Zhang; Christian W Freudiger; Brian G Saar; Marjolein van Ruijven; Gerard van Dalen; Chunhong Xiao; X Sunney Xie
Label-free imaging of biomolecules in food products using stimulated Raman microscopy.
Journal of biomedical optics 2010;15(6):066016.
2010: Yuichi Taniguchi; Paul J Choi; Gene-Wei Li; Huiyi Chen; Mohan Babu; Jeremy Hearn; Andrew Emili; X Sunney Xie
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells.
Science (New York, N.Y.) 2010;329(5991):533-8.
2010: Brian G Saar; Yining Zeng; Christian W Freudiger; Yu-San Liu; Michael E Himmel; X Sunney Xie; Shi-You Ding
Label-free, real-time monitoring of biomass processing with stimulated Raman scattering microscopy.
Angewandte Chemie (International ed. in English) 2010;49(32):5476-9.
2010: Wei Min; Liang Jiang; X Sunney Xie
Complex kinetics of fluctuating enzymes: phase diagram characterization of a minimal kinetic scheme.
Chemistry, an Asian journal 2010;5(5):1129-38.
2010: Paul J Choi; X Sunney Xie; Eugene I Shakhnovich
Stochastic switching in gene networks can occur by a single-molecule event or many molecular steps.
Journal of molecular biology 2010;396(1):230-44.
2010: Sangjin Kim; Charles M Schroeder; X Sunney Xie
Single-molecule study of DNA polymerization activity of HIV-1 reverse transcriptase on DNA templates.
Journal of molecular biology 2010;395(5):995-1006.
2009: Paul C Blainey; Guobin Luo; S C Kou; Walter F Mangel; Gregory L Verdine; Biman Bagchi; X Sunney Xie
Nonspecifically bound proteins spin while diffusing along DNA.
Nature structural & molecular biology 2009;16(12):1224-9.
2009: Rodney K Lyn; David C Kennedy; Selena M Sagan; David R Blais; Yanouchka Rouleau; Adrian F Pegoraro; X Sunney Xie; Albert Stolow; John Paul Pezacki
Direct imaging of the disruption of hepatitis C virus replication complexes by inhibitors of lipid metabolism.
Virology 2009;394(1):130-42.
2009: Wei Min; Sijia Lu; Shasha Chong; Rahul Roy; Gary R Holtom; X Sunney Xie
Imaging chromophores with undetectable fluorescence by stimulated emission microscopy.
Nature 2009;461(7267):1105-9.
2009: Wei Min; X Sunney Xie; Biman Bagchi
Role of conformational dynamics in kinetics of an enzymatic cycle in a nonequilibrium steady state.
The Journal of chemical physics 2009;131(6):065104.
2009: Brian G Saar; Gary R Holtom; Christian W Freudiger; Chrisita Ackermann; Winfield Hill; X Sunney Xie
Intracavity wavelength modulation of an optical parametric oscillator for coherent Raman microscopy.
Optics express 2009;17(15):12532-9.
2009: Peter A Sims; X Sunney Xie
Probing dynein and kinesin stepping with mechanical manipulation in a living cell.
Chemphyschem : a European journal of chemical physics and physical chemistry 2009;10(9-10):1511-6.
2009: Khanh Kieu; Brian G Saar; Gary R Holtom; X Sunney Xie; Frank W Wise
High-power picosecond fiber source for coherent Raman microscopy.
Optics letters 2009;34(13):2051-3.
2009: Wei Min; Sijia Lu; Markus Rueckel; Gary R Holtom; X Sunney Xie
Near-degenerate four-wave-mixing microscopy.
Nano letters 2009;9(6):2423-6.
2009: Wei Min; Sijia Lu; Gary R Holtom; X Sunney Xie
Triple-resonance coherent anti-stokes Raman scattering microspectroscopy.
Chemphyschem : a European journal of chemical physics and physical chemistry 2009;10(2):344-7.
2008: Paul J Choi; Long Cai; Kirsten Frieda; X Sunney Xie
A stochastic single-molecule event triggers phenotype switching of a bacterial cell.
Science (New York, N.Y.) 2008;322(5900):442-6.
2008: Biman Bagchi; Paul C Blainey; X Sunney Xie
Diffusion constant of a nonspecifically bound protein undergoing curvilinear motion along DNA.
The journal of physical chemistry. B 2008;112(19):6282-4.
2008: Xiaolin Nan; Peter A Sims; X Sunney Xie
Organelle tracking in a living cell with microsecond time resolution and nanometer spatial precision.
Chemphyschem : a European journal of chemical physics and physical chemistry 2008;9(5):707-12.
2008: Wei Min; X Sunney Xie; Biman Bagchi
Two-dimensional reaction free energy surfaces of catalytic reaction: effects of protein conformational dynamics on enzyme catalysis.
The journal of physical chemistry. B 2008;112(2):454-66.
2008: Conor L Evans; X Sunney Xie
Coherent anti-stokes Raman scattering microscopy: chemical imaging for biology and medicine.
Annual review of analytical chemistry (Palo Alto, Calif.) 2008;1():883-909.
2008: X Sunney Xie; Paul J Choi; Gene-Wei Li; Nam Ki Lee; Giuseppe Lia
Single-molecule approach to molecular biology in living bacterial cells.
Annual review of biophysics 2008;37():417-44.
2007: Conor L Evans; Xiaoyin Xu; Santosh kesari; X Sunney Xie; Steven T C Wong; Geoffrey S Young
Chemically-selective imaging of brain structures with CARS microscopy.
Optics express 2007;15(19):12076-87.
2007: Guobin Luo; Mina Wang; William H Konigsberg; X Sunney Xie
Single-molecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(31):12610-5.
2007: Johan Elf; Gene-Wei Li; X Sunney Xie
Probing transcription factor dynamics at the single-molecule level in a living cell.
Science (New York, N.Y.) 2007;316(5828):1191-4.
2007: Sangjin Kim; Paul C Blainey; Charles M Schroeder; X Sunney Xie
Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA.
Nature methods 2007;4(5):397-9.
2006: Xiaolin Nan; Angela M Tonary; Albert Stolow; X Sunney Xie; John Paul Pezacki
Intracellular imaging of HCV RNA and cellular lipids by using simultaneous two-photon fluorescence and coherent anti-Stokes Raman scattering microscopies.
Chembiochem : a European journal of chemical biology 2006;7(12):1895-7.
2006: Nir Friedman; Long Cai; X Sunney Xie
Linking stochastic dynamics to population distribution: an analytical framework of gene expression.
Physical review letters 2006;97(16):168302.
2006: Wei Min; Irina V Gopich; Brian Patrick English; SC Kou; X Sunney Xie; Attila Szabo
When does the Michaelis-Menten equation hold for fluctuating enzymes?
The journal of physical chemistry. B 2006;110(41):20093-7.
2006: Xiaolin Nan; Eric O Potma; X Sunney Xie
Nonperturbative chemical imaging of organelle transport in living cells with coherent anti-stokes Raman scattering microscopy.
Biophysical journal 2006;91(2):728-35.
2006: Hong Qian; X Sunney Xie
Generalized Haldane equation and fluctuation theorem in the steady-state cycle kinetics of single enzymes.
Physical review. E, Statistical, nonlinear, and soft matter physics 2006;74(1 Pt 1):010902.
2006: Feruz Ganikhanov; Conor L Evans; Brian G Saar; X Sunney Xie
High-sensitivity vibrational imaging with frequency modulation coherent anti-Stokes Raman scattering (FM CARS) microscopy.
Optics letters 2006;31(12):1872-4.
2006: Guobin Luo; Ioan Andricioaei; X Sunney Xie; Martin Karplus
Dynamic distance disorder in proteins is caused by trapping.
The journal of physical chemistry. B 2006;110(19):9363-7.
2006: X Sunney Xie; Ji Yu; Wei Yuan Yang
Living cells as test tubes.
Science (New York, N.Y.) 2006;312(5771):228-30.
2006: Paul C Blainey; Antoine M van Oijen; Anirban Banerjee; Gregory L Verdine; X Sunney Xie
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(15):5752-7.
2006: Ji Yu; Jie Xiao; Xiaojia Ren; kaiqin lao; X Sunney Xie
Probing gene expression in live cells, one protein molecule at a time.
Science (New York, N.Y.) 2006;311(5767):1600-3.
2006: Long Cai; Nir Friedman; X Sunney Xie
Stochastic protein expression in individual cells at the single molecule level.
Nature 2006;440(7082):358-62.
2006: Jong-Bong Lee; Richard K Hite; Samir M Hamdan; X Sunney Xie; Charles C Richardson; Antoine M van Oijen
DNA primase acts as a molecular brake in DNA replication.
Nature 2006;439(7076):621-4.
2006: Brian Patrick English; Wei Min; Antoine M van Oijen; Kang Taek Lee; Guobin Luo; Hongye Sun; Binny J Cherayil; SC Kou; X Sunney Xie
Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited.
Nature chemical biology 2006;2(2):87-94.
2006: Eric O Potma; Conor L Evans; X Sunney Xie
Heterodyne coherent anti-Stokes Raman scattering (CARS) imaging.
Optics letters 2006;31(2):241-3.
2006: Wei Min; X Sunney Xie
Kramers model with a power-law friction kernel: dispersed kinetics and dynamic disorder of biochemical reactions.
Physical review. E, Statistical, nonlinear, and soft matter physics 2006;73(1 Pt 1):010902.
2006: Bojana Rakic; Selena M Sagan; Matthew Noestheden; Sylvie Bélanger; Xiaolin Nan; Conor L Evans; X Sunney Xie; John Paul Pezacki
Peroxisome proliferator-activated receptor alpha antagonism inhibits hepatitis C virus replication.
Chemistry & biology 2006;13(1):23-30.
2005: Xiaolin Nan; Peter A Sims; Peng Chen; X Sunney Xie
Observation of individual microtubule motor steps in living cells with endocytosed quantum dots.
The journal of physical chemistry. B 2005;109(51):24220-4.
2005: Wei Min; Brian Patrick English; Guobin Luo; Binny J Cherayil; SC Kou; X Sunney Xie
Fluctuating enzymes: lessons from single-molecule studies.
Accounts of chemical research 2005;38(12):923-31.
2005: Wei Min; Liang Jiang; Ji Yu; SC Kou; Hong Qian; X Sunney Xie
Nonequilibrium steady state of a nanometric biochemical system: determining the thermodynamic driving force from single enzyme turnover time traces.
Nano letters 2005;5(12):2373-8.
2005: Pallavi Debnath; Wei Min; X Sunney Xie; Binny J Cherayil
Multiple time scale dynamics of distance fluctuations in a semiflexible polymer: a one-dimensional generalized Langevin equation treatment.
The Journal of chemical physics 2005;123(20):204903.
2005: Conor L Evans; Eric O Potma; Mehron Puoris'haag; Daniel Côté; Charles P Lin; X Sunney Xie
Chemical imaging of tissue in vivo with video-rate coherent anti-Stokes Raman scattering microscopy.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(46):16807-12.
2005: SC Kou; Binny J Cherayil; Wei Min; Brian Patrick English; X Sunney Xie
Single-molecule Michaelis-Menten equations.
The journal of physical chemistry. B 2005;109(41):19068-81.
2005: Wei Min; Guobin Luo; Binny J Cherayil; SC Kou; X Sunney Xie
Observation of a power-law memory kernel for fluctuations within a single protein molecule.
Physical review letters 2005;94(19):198302.
2005: Eric O Potma; X Sunney Xie
Direct visualization of lipid phase segregation in single lipid bilayers with coherent anti-Stokes Raman scattering microscopy.
Chemphyschem : a European journal of chemical physics and physical chemistry 2005;6(1):77-9.
2004: Conor L Evans; Eric O Potma; X Sunney Xie
Coherent anti-stokes raman scattering spectral interferometry: determination of the real and imaginary components of nonlinear susceptibility chi(3) for vibrational microscopy.
Optics letters 2004;29(24):2923-5.
2004: SC Kou; X Sunney Xie
Generalized Langevin equation with fractional Gaussian noise: subdiffusion within a single protein molecule.
Physical review letters 2004;93(18):180603.
2003: ER Dufresne; E I Corwin; N A Greenblatt; J Ashmore; D Y Wang; Anthony D Dinsmore; Ji-Xin Cheng; X Sunney Xie; John W Hutchinson; David A Weitz
Flow and fracture in drying nanoparticle suspensions.
Physical review letters 2003;91(22):224501.
2003: Xiaolin Nan; Ji-Xin Cheng; X Sunney Xie
Vibrational imaging of lipid droplets in live fibroblast cells with coherent anti-Stokes Raman scattering microscopy.
Journal of lipid research 2003;44(11):2202-8.
2003: Haw Yang; Guobin Luo; Pallop Karnchanaphanurach; Tai Man Louie; Ivan Rech; Sergio Cova; Luying Xun; X Sunney Xie
Protein conformational dynamics probed by single-molecule electron transfer.
Science (New York, N.Y.) 2003;302(5643):262-6.
2003: Eric O Potma; Conor Evans; X Sunney Xie; R Jason Jones; Jun Ye
Picosecond-pulse amplification with an external passive optical cavity.
Optics letters 2003;28(19):1835-7.
2003: Antoine M van Oijen; Paul C Blainey; Donald J Crampton; Charles C Richardson; Tom Ellenberger; X Sunney Xie
Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder.
Science (New York, N.Y.) 2003;301(5637):1235-8.
2003: Ji-Xin Cheng; Sophie Pautot; David A Weitz; X Sunney Xie
Ordering of water molecules between phospholipid bilayers visualized by coherent anti-Stokes Raman scattering microscopy.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(17):9826-30.
2003: Tai Man Louie; X Sunney Xie; Luying Xun
Coordinated production and utilization of FADH2 by NAD(P)H-flavin oxidoreductase and 4-hydroxyphenylacetate 3-monooxygenase.
Biochemistry 2003;42(24):7509-17.
2003: Achim Hartschuh; Erik J Sánchez; X Sunney Xie; Lukas Novotny
High-resolution near-field Raman microscopy of single-walled carbon nanotubes.
Physical review letters 2003;90(9):095503.
2002: Tai Man Louie; Haw Yang; Pallop Karnchanaphanurach; X Sunney Xie; Luying Xun
FAD is a preferred substrate and an inhibitor of Escherichia coli general NAD(P)H:flavin oxidoreductase.
The Journal of biological chemistry 2002;277(42):39450-5.
2002: Eric O Potma; David J Jones; Ji-Xin Cheng; X Sunney Xie; Jun Ye
High-sensitivity coherent anti-Stokes Raman scattering microscopy with two tightly synchronized picosecond lasers.
Optics letters 2002;27(13):1168-70.
2002: Ji-Xin Cheng; Y Kevin Jia; Gengfeng Zheng; X Sunney Xie
Laser-scanning coherent anti-Stokes Raman scattering microscopy and applications to cell biology.
Biophysical journal 2002;83(1):502-9.
2001: Ji-Xin Cheng; L D Book; X Sunney Xie
Polarization coherent anti-Stokes Raman scattering microscopy.
Optics letters 2001;26(17):1341-3.
1999: X Sunney Xie; H P Lu
Single-molecule enzymology.
The Journal of biological chemistry 1999;274(23):15967-70.
1998: H P Lu; Luying Xun; X Sunney Xie
Single-molecule enzymatic dynamics.
Science (New York, N.Y.) 1998;282(5395):1877-82.