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Shizhong Xu

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All Publications

2012: Shizhong Xu
Testing Hardy-Weinberg disequilibrium using the generalized linear model.
Genetics research 2012;94(6):319-30.
2012: Fuping Zhao; Shizhong Xu
Genotype by environment interaction of quantitative traits: a case study in barley.
G3 (Bethesda, Md.) 2012;2(7):779-88.
2012: X Che; Shizhong Xu
Generalized linear mixed models for mapping multiple quantitative trait loci.
Heredity 2012;109(1):41-9.
2012: Fuping Zhao; Shizhong Xu
An expectation and maximization algorithm for estimating Q X E interaction effects.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2012;124(8):1375-87.
2012: Haimao Zhan; Shizhong Xu
Adaptive ridge regression for rare variant detection.
PloS one 2012;7(8):e44173.
2012: Zhiqiu Hu; Zhiquan Wang; Shizhong Xu
An infinitesimal model for quantitative trait genomic value prediction.
PloS one 2012;7(7):e41336.
2012: Zhiqiu Hu; Mitchell R Lucas; Philip A Roberts; Steve I Wanamaker; Timothy J Close; Jeffrey D Ehlers; Shizhong Xu
ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction.
BMC genetics 2012;13():9.
2011: Sundrish Sharma; Shizhong Xu; Bahman Ehdaie; Aaron Hoops; Timothy J Close; Adam Lukaszewski; J Giles Waines
Dissection of QTL effects for root traits using a chromosome arm-specific mapping population in bread wheat.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2011;122(4):759-69.
2011: Shizhong Xu; Z Hu
Mapping quantitative trait loci using the MCMC procedure in SAS.
Heredity 2011;106(2):357-69.
2011: Haimao Zhan; Xin Chen; Shizhong Xu
A stochastic expectation and maximization algorithm for detecting quantitative trait-associated genes.
Bioinformatics (Oxford, England) 2011;27(1):63-9.
2010: Shizhong Xu; Zhiqiu Hu
Methods of plant breeding in the genome era.
Genetics research 2010;92(5-6):423-41.
2010: Xin Chen; Fuping Zhao; Shizhong Xu
Mapping environment-specific quantitative trait loci.
Genetics 2010;186(3):1053-66.
2010: Shizhong Xu
An expectation-maximization algorithm for the Lasso estimation of quantitative trait locus effects.
Heredity 2010;105(5):483-94.
2010: Lide Han; Shizhong Xu
Genome-wide evaluation for quantitative trait loci under the variance component model.
Genetica 2010;138(9-10):1099-109.
2010: Shizhong Xu; Zhiqiu Hu
Generalized linear model for interval mapping of quantitative trait loci.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2010;121(1):47-63.
2010: Xiaohong Che; Shizhong Xu
Significance test and genome selection in bayesian shrinkage analysis.
International journal of plant genomics 2010;2010():893206.
2009: Shizhong Xu; Zhiqiu Hu
Mapping quantitative trait Loci using distorted markers.
International journal of plant genomics 2009;2009():410825.
2009: Zhiqiu Hu; Shizhong Xu
PROC QTL-A SAS Procedure for Mapping Quantitative Trait Loci.
International journal of plant genomics 2009;2009():141234.
2008: L Han; Shizhong Xu
A Fisher scoring algorithm for the weighted regression method of QTL mapping.
Heredity 2008;101(5):453-64.
2008: Z Hu; Shizhong Xu
A simple method for calculating the statistical power for detecting a QTL located in a marker interval.
Heredity 2008;101(1):48-52.
2008: Nengjun Yi; Shizhong Xu
Bayesian LASSO for quantitative trait loci mapping.
Genetics 2008;179(2):1045-55.
2007: Shizhong Xu
Derivation of the shrinkage estimates of quantitative trait locus effects.
Genetics 2007;177(2):1255-8.
2007: Shizhong Xu
An empirical Bayes method for estimating epistatic effects of quantitative trait loci.
Biometrics 2007;63(2):513-21.
2007: Zhenyu Jia; Shizhong Xu
Mapping quantitative trait loci for expression abundance.
Genetics 2007;176(1):611-23.
2007: Shizhong Xu; Zhenyu Jia
Genomewide analysis of epistatic effects for quantitative traits in barley.
Genetics 2007;175(4):1955-63.
2006: Shizhong Xu; C Xu
A multivariate model for ordinal trait analysis.
Heredity 2006;97(6):409-17.
2006: Yi Qu; Shizhong Xu
Quantitative trait associated microarray gene expression data analysis.
Molecular biology and evolution 2006;23(8):1558-73.
2005: Zhenyu Jia; Shizhong Xu
Clustering expressed genes on the basis of their association with a quantitative phenotype.
Genetical research 2005;86(3):193-207.
2005: Yuan-Ming Zhang; Shizhong Xu
A penalized maximum likelihood method for estimating epistatic effects of QTL.
Heredity 2005;95(1):96-104.
2005: Hui Wang; Yuan-Ming Zhang; Xinmin Li; Godfred L Masinde; Subburaman Mohan; David J Baylink; Shizhong Xu
Bayesian shrinkage estimation of quantitative trait loci parameters.
Genetics 2005;170(1):465-80.
2005: Yuan-Ming Zhang; Yongcai Mao; Chongqing Xie; Howie Smith; Lang Luo; Shizhong Xu
Mapping quantitative trait loci using naturally occurring genetic variance among commercial inbred lines of maize (Zea mays L.).
Genetics 2005;169(4):2267-75.
2005: L Luo; Yuan-Ming Zhang; Shizhong Xu
A quantitative genetics model for viability selection.
Heredity 2005;94(3):347-55.
2005: Y Mao; Shizhong Xu
A Monte Carlo algorithm for computing the IBD matrices using incomplete marker information.
Heredity 2005;94(3):305-15.
2005: Chenwu Xu; Zhikang Li; Shizhong Xu
Joint mapping of quantitative trait Loci for multiple binary characters.
Genetics 2005;169(2):1045-59.
2005: C Xu; Yuan-Ming Zhang; Shizhong Xu
An EM algorithm for mapping quantitative resistance loci.
Heredity 2005;94(1):119-28.
2004: Yi Qu; Shizhong Xu
Supervised cluster analysis for microarray data based on multivariate Gaussian mixture.
Bioinformatics (Oxford, England) 2004;20(12):1905-13.
2004: Yongcai Mao; Shizhong Xu
Mapping QTLs for traits measured as percentages.
Genetical research 2004;83(3):159-68.
2004: Yuan-Ming Zhang; Shizhong Xu
Mapping quantitative trait loci in F2 incorporating phenotypes of F3 progeny.
Genetics 2004;166(4):1981-93.
2003: Shizhong Xu
Theoretical basis of the Beavis effect.
Genetics 2003;165(4):2259-68.
2003: Shizhong Xu; Nengjun Yi; David T Burke; Andrzej T Galecki; Richard A Miller
An EM algorithm for mapping binary disease loci: application to fibrosarcoma in a four-way cross mouse family.
Genetical research 2003;82(2):127-38.
2003: Lang Luo; Yongcai Mao; Shizhong Xu
Correcting the bias in estimation of genetic variances contributed by individual QTL.
Genetica 2003;119(2):107-13.
2003: L Luo; Shizhong Xu
Mapping viability loci using molecular markers.
Heredity 2003;90(6):459-67.
2003: C Xu; X He; Shizhong Xu
Mapping quantitative trait loci underlying triploid endosperm traits.
Heredity 2003;90(3):228-35.
2003: Shizhong Xu
Estimating polygenic effects using markers of the entire genome.
Genetics 2003;163(2):789-801.
2002: Claus Vogl; Shizhong Xu
QTL analysis in arbitrary pedigrees with incomplete marker information.
Heredity 2002;89(5):339-45.
2002: Nengjun Yi; Shizhong Xu
Linkage analysis of quantitative trait loci in multiple line crosses.
Genetica 2002;114(3):217-30.
2002: Nengjun Yi; Shizhong Xu
Mapping quantitative trait loci with epistatic effects.
Genetical research 2002;79(2):185-98.
2002: Shizhong Xu
QTL analysis in plants.
Methods in molecular biology (Clifton, N.J.) 2002;195():283-310.
2001: Nengjun Yi; Shizhong Xu
Bayesian mapping of quantitative trait loci under complicated mating designs.
Genetics 2001;157(4):1759-71.
2000: Shizhong Xu; Nengjun Yi
Mixed model analysis of quantitative trait loci.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(26):14542-7.
2000: DD Gessler; Shizhong Xu
Meiosis and the evolution of recombination at low mutation rates.
Genetics 2000;156(1):449-56.
2000: Nengjun Yi; Shizhong Xu
Bayesian mapping of quantitative trait loci under the identity-by-descent-based variance component model.
Genetics 2000;156(1):411-22.
2000: Chongqing Xie; Shizhong Xu
Mapping quantitative trait loci in tetraploid populations.
Genetical research 2000;76(1):105-15.
2000: Nengjun Yi; Shizhong Xu
Bayesian mapping of quantitative trait loci for complex binary traits.
Genetics 2000;155(3):1391-403.
2000: Shizhong Xu
Phylogenetic analysis under reticulate evolution.
Molecular biology and evolution 2000;17(6):897-907.
2000: Shizhong Xu; Claus Vogl
Maximum likelihood analysis of quantitative trait loci under selective genotyping.
Heredity 2000;84 ( Pt 5)():525-37.
1999: Nengjun Yi; Shizhong Xu
A random model approach to mapping quantitative trait loci for complex binary traits in outbred populations.
Genetics 1999;153(2):1029-40.
1999: Nengjun Yi; Shizhong Xu
Mapping quantitative trait loci for complex binary traits in outbred populations.
Heredity 1999;82 ( Pt 6)():668-76.
1999: DD Gessler; Shizhong Xu
On the evolution of recombination and meiosis.
Genetical research 1999;73(2):119-31.
1999: DD Gessler; Shizhong Xu
Multipoint genetic mapping of quantitative trait loci with dominant markers in outbred populations.
Genetica 1999;105(3):281-91.
1998: Shizhong Xu
Iteratively reweighted least squares mapping of quantitative trait loci.
Behavior genetics 1998;28(5):341-55.
1998: S Rao; Shizhong Xu
Mapping quantitative trait loci for ordered categorical traits in four-way crosses.
Heredity 1998;81 ( Pt 2)():214-24.
1998: Chongqing Xie; DD Gessler; Shizhong Xu
Combining different line crosses for mapping quantitative trait loci using the identical by descent-based variance component method.
Genetics 1998;149(2):1139-46.
1998: Chongqing Xie; Shizhong Xu
Efficiency of multistage marker-assisted selection in the improvement of multiple quantitative traits.
Heredity 1998;80 ( Pt 4)():489-98.
1998: Shizhong Xu
Further investigation on the regression method of mapping quantitative trait loci.
Heredity 1998;80 ( Pt 3)():364-73.
1998: Shizhong Xu; DD Gessler
Multipoint genetic mapping of quantitative trait loci using a variable number of sibs per family.
Genetical research 1998;71(1):73-83.
1998: Shizhong Xu; N Yonash; R L Vallejo; H H Cheng
Mapping quantitative trait loci for binary traits using a heterogeneous residual variance model: an application to Marek's disease susceptibility in chickens.
Genetica 1998;104(2):171-8.
1998: Chongqing Xie; DD Gessler; Shizhong Xu
Sib mating designs for mapping quantitative trait loci.
Genetica 1998;104(1):9-19.
1998: Shizhong Xu
Mapping quantitative trait loci using multiple families of line crosses.
Genetics 1998;148(1):517-24.
1996: Shizhong Xu
Computation of the full likelihood function for estimating variance at a quantitative trait locus.
Genetics 1996;144(4):1951-60.
1996: DD Gessler; Shizhong Xu
Using the expectation or the distribution of the identity by descent for mapping quantitative trait loci under the random model.
American journal of human genetics 1996;59(6):1382-90.
1996: Shizhong Xu; W R Atchley
Mapping quantitative trait loci for complex binary diseases using line crosses.
Genetics 1996;143(3):1417-24.
1995: Shizhong Xu; W R Atchley
A random model approach to interval mapping of quantitative trait loci.
Genetics 1995;141(3):1189-97.
1995: Shizhong Xu; W R Atchley
Heterozygosity of F2 from two segregating populations.
The Journal of heredity 1995;86(6):477-80.