Akihiko Yamagishi

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Yang Yinjie; Itoh Takashi; Yokobori Shin-ichi; Itahashi Shiho; Shimada Haruo; Satoh Katsuya; Ohba Hirofumi; Narumi Issay; Yamagishi Akihiko
Deinococcus aerius sp. nov., isolated from the high atmosphere.
Kato Shingo; Kobayashi Chiyori; Kakegawa Takeshi; Yamagishi Akihiko
Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough.
Yokobori Shin-ichi; Itoh Takashi; Yoshinari Shigeo; Nomura Norimichi; Sako Yoshihiko; Yamagishi Akihiko; Oshima Tairo; Kita Kiyoshi; Watanabe Yoh-ichi
Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene.

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2009: Yang Yinjie; Itoh Takashi; Yokobori Shin-ichi; Itahashi Shiho; Shimada Haruo; Satoh Katsuya; Ohba Hirofumi; Narumi Issay; Yamagishi Akihiko
Deinococcus aerius sp. nov., isolated from the high atmosphere.
International journal of systematic and evolutionary microbiology 2009;59(Pt 8):1862-6.
2009: Kato Shingo; Kobayashi Chiyori; Kakegawa Takeshi; Yamagishi Akihiko
Microbial communities in iron-silica-rich microbial mats at deep-sea hydrothermal fields of the Southern Mariana Trough.
Environmental microbiology 2009;11(8):2094-111.
2009: Yokobori Shin-ichi; Itoh Takashi; Yoshinari Shigeo; Nomura Norimichi; Sako Yoshihiko; Yamagishi Akihiko; Oshima Tairo; Kita Kiyoshi; Watanabe Yoh-ichi
Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene.
BMC evolutionary biology 2009;9():198.
2008: Sasaki Michika; Uno Mayumi; Akanuma Satoshi; Yamagishi Akihiko
Random mutagenesis improves the low-temperature activity of the tetrameric 3-isopropylmalate dehydrogenase from the hyperthermophile Sulfolobus tokodaii.
Protein engineering, design & selection : PEDS 2008;21(12):721-7.
2008: Akanuma Satoshi; Yamagishi Akihiko
Experimental evidence for the existence of a stable half-barrel subdomain in the (beta/alpha)8-barrel fold.
Journal of molecular biology 2008;382(2):458-66.
2008: Shimada Haruo; Nemoto Naoki; Shida Yasuo; Oshima Tairo; Yamagishi Akihiko
Effects of pH and temperature on the composition of polar lipids in Thermoplasma acidophilum HO-62.
Journal of bacteriology 2008;190(15):5404-11.
2008: Yokobori Shin-ichi; Iseto Tohru; Asakawa Shuichi; Sasaki Takashi; Shimizu Nobuyoshi; Yamagishi Akihiko; Oshima Tairo; Hirose Euichi
Complete nucleotide sequences of mitochondrial genomes of two solitary entoprocts, Loxocorone allax and Loxosomella aloxiata: implications for lophotrochozoan phylogeny.
Molecular phylogenetics and evolution 2008;47(2):612-28.
2007: Yokobori Shin-ichi; Lindsay Dhugal J; Yoshida Mari; Tsuchiya Kotaro; Yamagishi Akihiko; Maruyama Tadashi; Oshima Tairo
Mitochondrial genome structure and evolution in the living fossil vampire squid, Vampyroteuthis infernalis, and extant cephalopods.
Molecular phylogenetics and evolution 2007;44(2):898-910.
2007: Shimizu Hideaki; Yokobori Shin-ichi; Ohkuri Takatoshi; Yokogawa Takashi; Nishikawa Kazuya; Yamagishi Akihiko
Extremely thermophilic translation system in the common ancestor commonote: ancestral mutants of Glycyl-tRNA synthetase from the extreme thermophile Thermus thermophilus.
Journal of molecular biology 2007;369(4):1060-9.
2007: Ohkuri Takatoshi; Yamagishi Akihiko
The effects of mutations at position 253 on the thermostability of the Bacillus subtilis 3-isopropylmalate dehydrogenase subunit interface.
Journal of biochemistry 2007;141(6):791-7.
2007: Hara Futoshi; Yamashiro Kan; Nemoto Naoki; Ohta Yoshinori; Yokobori Shin-ichi; Yasunaga Takuo; Hisanaga Shin-ichi; Yamagishi Akihiko
An actin homolog of the archaeon Thermoplasma acidophilum that retains the ancient characteristics of eukaryotic actin.
Journal of bacteriology 2007;189(5):2039-45.
2006: Mitomo Daisuke; Nakamura Hironori K; Ikeda Kazuyoshi; Yamagishi Akihiko; Higo Junichi
Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model.
Proteins 2006;64(4):883-94.
2006: Yamashiro Kan; Yokobori Shin-Ichi; Oshima Tairo; Yamagishi Akihiko
Structural analysis of the plasmid pTA1 isolated from the thermoacidophilic archaeon Thermoplasma acidophilum.
Extremophiles : life under extreme conditions 2006;10(4):327-35.
2006: Watanabe Keiko; Yamagishi Akihiko
The effects of multiple ancestral residues on the Thermus thermophilus 3-isopropylmalate dehydrogenase.
FEBS letters 2006;580(16):3867-71.
2006: Watanabe Keiko; Ohkuri Takatoshi; Yokobori Shin-ichi; Yamagishi Akihiko
Designing thermostable proteins: ancestral mutants of 3-isopropylmalate dehydrogenase designed by using a phylogenetic tree.
Journal of molecular biology 2006;355(4):664-74.
2005: Yamashiro Kan; Yamagishi Akihiko
Characterization of the DNA gyrase from the thermoacidophilic archaeon Thermoplasma acidophilum.
Journal of bacteriology 2005;187(24):8531-6.
2005: Akanuma Satoshi; Yamagishi Akihiko
Identification and characterization of key substructures involved in the early folding events of a (beta/alpha)8-barrel protein as studied by experimental and computational methods.
Journal of molecular biology 2005;353(5):1161-70.
2005: Iwabata Hisako; Watanabe Keiko; Ohkuri Takatoshi; Yokobori Shin-Ichi; Yamagishi Akihiko
Thermostability of ancestral mutants of Caldococcus noboribetus isocitrate dehydrogenase.
FEMS microbiology letters 2005;243(2):393-8.
2005: Akanuma Satoshi; Miyagawa Hiroh; Kitamura Kunihiro; Yamagishi Akihiko
A detailed unfolding pathway of a (beta/alpha)8-barrel protein as studied by molecular dynamics simulations.
Proteins 2005;58(3):538-46.
2005: Hara Kurt; Kakegawa Takeshi; Yamashiro Kan; Maruyama Akihiko; Ishibashi Jun-Ichiro; Marumo Katsumi; Urabe Tetsuro; Yamagishi Akihiko
Analysis of the archaeal sub-seafloor community at Suiyo Seamount on the Izu-Bonin Arc.
Advances in space research : the official journal of the Committee on Space Research (COSPAR) 2005;35(9):1634-42.
2004: Matsuura Hisae; Shimotakahara Sakurako; Sakuma Chiseko; Tashiro Mitsuru; Shindo Heisaburo; Mochizuki Kiwa; Yamagishi Akihiko; Kojima Masaki; Takahashi Kenji
Thermal unfolding of ribonuclease T1 studied by multi-dimensional NMR spectroscopy.
Biological chemistry 2004;385(12):1157-64.
2004: Hiraga Kaori; Yamagishi Akihiko; Oshima Tairo
Mapping of unit boundaries of a protein: exhaustive search for permissive sites for duplication by complementation analysis of random fragment libraries of tryptophan synthase alpha subunit.
Journal of molecular biology 2004;335(4):1093-104.
2003: Horiuchi Tsukasa; Kobayashi Kensei; Takano Yoshinori; Marumo Katsumi; Nakashima Miwako; Yamagishi Akihiko; Ishibashi Jun-ichiro; Urabe Tetsuro
Organics in chimneys and water samples from deep-sea hydrothermal systems: implications for sub-vent biosphere.
Uchu Seibutsu Kagaku 2003;17(3):190-1.
2003: Ohkuri Takatoshi; Yamagishi Akihiko
Increased thermal stability against irreversible inactivation of 3-isopropylmalate dehydrogenase induced by decreased van der Waals volume at the subunit interface.
Protein engineering 2003;16(8):615-21.
2003: Nemoto Naoki; Shida Yasuo; Shimada Haruo; Oshima Tairo; Yamagishi Akihiko
Characterization of the precursor of tetraether lipid biosynthesis in the thermoacidophilic archaeon Thermoplasma acidophilum.
Extremophiles : life under extreme conditions 2003;7(3):235-43.
2003: Nemoto Naoki; Oshima Tairo; Yamagishi Akihiko
Purification and characterization of geranylgeranylglyceryl phosphate synthase from a thermoacidophilic archaeon, Thermoplasma acidophilum.
Journal of biochemistry 2003;133(5):651-7.
2003: Uzawa Taketoshi; Yamagishi Akihiko; Oshima Tairo
Continuous cell-free protein synthesis directed by messenger DNA and catalyzed by extract of Thermus thermophilus HB27.
Bioscience, biotechnology, and biochemistry 2003;67(3):639-42.
2002: Suzuki Toshiharu; Yasugi Masako; Arisaka Fumio; Oshima Tairo; Yamagishi Akihiko
Cold-adaptation mechanism of mutant enzymes of 3-isopropylmalate dehydrogenase from Thermus thermophilus.
Protein engineering 2002;15(6):471-6.
2002: Uzawa Taketoshi; Yamagishi Akihiko; Oshima Tairo
Polypeptide synthesis directed by DNA as a messenger in cell-free polypeptide synthesis by extreme thermophiles, Thermus thermophilus HB27 and Sulfolobus tokodaii strain 7.
Journal of biochemistry 2002;131(6):849-53.
2002: Suzuki Toshiharu; Iwasaki Toshio; Uzawa Taketoshi; Hara Kurt; Nemoto Naoki; Kon Takahide; Ueki Toshiaki; Yamagishi Akihiko; Oshima Tairo
Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the genus Sulfolobus isolated from Beppu Hot Springs, Japan.
Extremophiles : life under extreme conditions 2002;6(1):39-44.
2002: Shimada Haruo; Nemoto Naoki; Shida Yasuo; Oshima Tairo; Yamagishi Akihiko
Complete polar lipid composition of Thermoplasma acidophilum HO-62 determined by high-performance liquid chromatography with evaporative light-scattering detection.
Journal of bacteriology 2002;184(2):556-63.
2001: Motono C; Oshima T; Yamagishi A
High thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus resulting from low DeltaC(p) of unfolding.
Protein engineering 2001;14(12):961-6.
2001: Yasugi M; Suzuki T; Yamagishi A; Oshima T
Analysis of the effect of accumulation of amino acid replacements on activity of 3-isopropylmalate dehydrogenase from Thermus thermophilus.
Protein engineering 2001;14(8):601-7.
2001: Miyazaki J; Nakaya S; Suzuki T; Tamakoshi M; Oshima T; Yamagishi A
Ancestral residues stabilizing 3-isopropylmalate dehydrogenase of an extreme thermophile: experimental evidence supporting the thermophilic common ancestor hypothesis.
Journal of biochemistry 2001;129(5):777-82.
2001: Yasugi M; Amino M; Suzuki T; Oshima T; Yamagishi A
Cold adaptation of the thermophilic enzyme 3-isopropylmalate dehydrogenase.
Journal of biochemistry 2001;129(3):477-84.
2001: Tamakoshi M; Nakano Y; Kakizawa S; Yamagishi A; Oshima T
Selection of stabilized 3-isopropylmalate dehydrogenase of Saccharomyces cerevisiae using the host-vector system of an extreme thermophile, Thermus thermophilus.
Extremophiles : life under extreme conditions 2001;5(1):17-22.
2001: Suzuki T; Yasugi M; Arisaka F; Yamagishi A; Oshima T
Adaptation of a thermophilic enzyme, 3-isopropylmalate dehydrogenase, to low temperatures.
Protein engineering 2001;14(2):85-91.
2001: Hirose R; Suzuki T; Moriyama H; Sato T; Yamagishi A; Oshima T; Tanaka N
Crystal structures of mutants of Thermus thermophilus IPMDH adapted to low temperatures.
Protein engineering 2001;14(2):81-4.
2001: Shimada H; Shida Y; Nemoto N; Oshima T; Yamagishi A
Quinone profiles of Thermoplasma acidophilum HO-62.
Journal of bacteriology 2001;183(4):1462-5.
2000: Yamagishi A
[Thermophiles and life science in space]
Uchu Seibutsu Kagaku 2000;14(4):332-40.
1999: Tamakoshi M; Yaoi T; Oshima T; Yamagishi A
An efficient gene replacement and deletion system for an extreme thermophile, Thermus thermophilus.
FEMS microbiology letters 1999;173(2):431-7.
1999: Akanuma S; Yamagishi A; Tanaka N; Oshima T
Further improvement of the thermal stability of a partially stabilized Bacillus subtilis 3-isopropylmalate dehydrogenase variant by random and site-directed mutagenesis.
European journal of biochemistry / FEBS 1999;260(2):499-504.
1999: Motono C; Yamagishi A; Oshima T
Urea-induced unfolding and conformational stability of 3-isopropylmalate dehydrogenase from the Thermophile thermus thermophilus and its mesophilic counterpart from Escherichia coli.
Biochemistry 1999;38(4):1332-7.
1998: Tamakoshi M; Yamagishi A; Oshima T
The organization of the leuC, leuD and leuB genes of the extreme thermophile Thermus thermophilus.
Gene 1998;222(1):125-32.
1998: Akanuma S; Yamagishi A; Tanaka N; Oshima T
Serial increase in the thermal stability of 3-isopropylmalate dehydrogenase from Bacillus subtilis by experimental evolution.
Protein science : a publication of the Protein Society 1998;7(3):698-705.
1997: Tamakoshi M; Uchida M; Tanabe K; Fukuyama S; Yamagishi A; Oshima T
A new Thermus-Escherichia coli shuttle integration vector system.
Journal of bacteriology 1997;179(15):4811-4.
1997: Suzuki T; Tanaka Y; Ishida M; Ishizuka M; Yamagishi A; Oshima T
Screening of a mutant plasmid with high expression efficiency of GC-rich leuB gene of an extreme thermophile, Thermus thermophilus, in Escherichia coli.
Journal of biochemistry 1997;121(6):1031-4.
1997: Akanuma S; Qu C; Yamagishi A; Tanaka N; Oshima T
Effect of polar side chains at position 172 on thermal stability of 3-isopropylmalate dehydrogenase from Thermus thermophilus.
FEBS letters 1997;410(2-3):141-4.
1997: Suzuki T; Inoki Y; Yamagishi A; Iwasaki T; Wakagi T; Oshima T
Molecular and phylogenetic characterization of isopropylmalate dehydrogenase of a thermoacidophilic archaeon, Sulfolobus sp. strain 7.
Journal of bacteriology 1997;179(4):1174-9.
1996: Aoshima M; Yamagishi A; Oshima T
Eubacteria-type isocitrate dehydrogenase from an archaeon: cloning, sequencing, and expression of a gene encoding isocitrate dehydrogenase from a hyperthermophilic archaebacterium, Caldococcus noboribetus.
Archives of biochemistry and biophysics 1996;336(1):77-85.
1996: Aoshima M; Nishibe Y; Hasegawa M; Yamagishi A; Oshima T
Cloning and sequencing of a gene encoding 16S ribosomal RNA from a novel hyperthermophilic archaebacterium NC12.
Gene 1996;180(1-2):183-7.
1996: Akanuma S; Yamagishi A; Tanaka N; Oshima T
Spontaneous tandem sequence duplications reverse the thermal stability of carboxyl-terminal modified 3-isopropylmalate dehydrogenase.
Journal of bacteriology 1996;178(21):6300-4.
1996: Yamagishi A; Tanimoto T; Suzuki T; Oshima T
Pyrimidine biosynthesis genes (pyrE and pyrF) of an extreme thermophile, Thermus thermophilus.
Applied and environmental microbiology 1996;62(6):2191-4.
1996: Hayashi-Iwasaki Y; Numata K; Yamagishi A; Yutani K; Sakurai M; Tanaka N; Oshima T
A stable intermediate in the thermal unfolding process of a chimeric 3-isopropylmalate dehydrogenase between a thermophilic and a mesophilic enzymes.
Protein science : a publication of the Protein Society 1996;5(3):511-6.
1996: Kotsuka T; Akanuma S; Tomuro M; Yamagishi A; Oshima T
Further stabilization of 3-isopropylmalate dehydrogenase of an extreme thermophile, Thermus thermophilus, by a suppressor mutation method.
Journal of bacteriology 1996;178(3):723-7.
1995: Yasuda M; Oyaizu H; Yamagishi A; Oshima T
Morphological variation of new Thermoplasma acidophilum isolates from Japanese hot springs.
Applied and environmental microbiology 1995;61(9):3482-5.
1995: Sakurai M; Moriyama H; Onodera K; Kadono S; Numata K; Hayashi Y; Kawaguchi J; Yamagishi A; Oshima T; Tanaka N
The crystal structure of thermostable mutants of chimeric 3-isopropylmalate dehydrogenase, 2T2M6T.
Protein engineering 1995;8(8):763-7.
1995: Tamakoshi M; Yamagishi A; Oshima T
Screening of stable proteins in an extreme thermophile, Thermus thermophilus.
Molecular microbiology 1995;16(5):1031-6.
1995: Kim Y W; Yasuda M; Yamagishi A; Oshima T; Ohta S
Characterization of the endosymbiont of a deep-sea bivalve, Calyptogena soyoae.
Applied and environmental microbiology 1995;61(2):823-7.
1995: Numata K; Muro M; Akutsu N; Nosoh Y; Yamagishi A; Oshima T
Thermal stability of chimeric isopropylmalate dehydrogenase genes constructed from a thermophile and a mesophile.
Protein engineering 1995;8(1):39-43.
1994: Yamagishi A
[Archaebacteria and evolution of life: recent progress in the research]
Seikagaku. The Journal of Japanese Biochemical Society 1994;66(12):1528-33.
1994: Yamagishi A; Miyazaki K; Oshima T
[Getting mutated proteins]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1994;39(7):1358-65.
1994: Uzawa T; Yamagishi A; Nishikawa K; Oshima T
Effects of unusual polyamines on phenylalanyl-tRNA formation.
Journal of biochemistry 1994;115(5):830-2.
1994: Kirino H; Aoki M; Aoshima M; Hayashi Y; Ohba M; Yamagishi A; Wakagi T; Oshima T
Hydrophobic interaction at the subunit interface contributes to the thermostability of 3-isopropylmalate dehydrogenase from an extreme thermophile, Thermus thermophilus.
European journal of biochemistry / FEBS 1994;220(1):275-81.
1993: Uzawa T; Yamagishi A; Ueda T; Chikazumi N; Watanabe K; Oshima T
Effects of polyamines on a continuous cell-free protein synthesis system of an extreme thermophile, Thermus thermophilus.
Journal of biochemistry 1993;114(5):732-4.
1993: Yamagishi A
[Genetic structure and engineering of Archaebacteria]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1993;38(10):1556-65.
1993: Kondo S; Yamagishi A; Oshima T
A physical map of the sulfur-dependent archaebacterium Sulfolobus acidocaldarius 7 chromosome.
Journal of bacteriology 1993;175(5):1532-6.
1992: Kirino H; Yamagishi A; Oshima T
[Thermal stabilization of enzyme proteins]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1992;37(3 Suppl):335-45.
1992: Miyazaki K; Eguchi H; Yamagishi A; Wakagi T; Oshima T
Molecular cloning of the isocitrate dehydrogenase gene of an extreme thermophile, Thermus thermophilus HB8.
Applied and environmental microbiology 1992;58(1):93-8.
1991: Kondo S; Yamagishi A; Oshima T
Positive selection for uracil auxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfolobus acidocaldarius by use of 5-fluoroorotic acid.
Journal of bacteriology 1991;173(23):7698-700.
1991: Xu X M; Koyama N; Cui M; Yamagishi A; Nosoh Y; Oshima T
Nucleotide sequence of the gene encoding NADH dehydrogenase from an alkalophile, Bacillus sp. strain YN-1.
Journal of biochemistry 1991;109(5):678-83.
1990: Yamagishi A; Oshima T
Circular chromosomal DNA in the sulfur-dependent archaebacterium Sulfolobus acidocaldarius.
Nucleic acids research 1990;18(5):1133-6.

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Akihiko Yamagishi

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