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Lauren Brinkac

Research Profile

Genes & Molecular Sequences

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Physiology

Gene Duplication

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National Institute of Allergy and Infectious Diseases (U.S.)

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Publications

TOP 3
Douglas B Rusch; J Yee-Greenbaum; Lauren M Brinkac; Roger S Lasken; M-J Lombardo; M Novotny; C L Dupont
Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa.
Derrick E Fouts; Jason Inman; Erin Beck; Lauren M Brinkac; Granger Sutton
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species.
Hernan A Lorenzi; Daniela Puiu; Jason R Miller; Lauren M Brinkac; Paolo Amedeo; Neil Hall; Elisabet V Caler
New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information.

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All Publications

2013: Douglas B Rusch; J Yee-Greenbaum; Lauren M Brinkac; Roger S Lasken; M-J Lombardo; M Novotny; C L Dupont
Draft Genome Sequence of a Single Cell of SAR86 Clade Subgroup IIIa.
Genome announcements 2013;1(1):.
2012: Derrick E Fouts; Jason Inman; Erin Beck; Lauren M Brinkac; Granger Sutton
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species.
Nucleic acids research 2012;40(22):e172.
2010: Hernan A Lorenzi; Daniela Puiu; Jason R Miller; Lauren M Brinkac; Paolo Amedeo; Neil Hall; Elisabet V Caler
New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information.
PLoS neglected tropical diseases 2010;4(6):e716.
2010: Johannes Goll; Robert Montgomery; Lauren M Brinkac; Seth Schobel; Derek M Harkins; Yinong Sebastian; Susmita Shrivastava; Scott Durkin; Granger Sutton
The Protein Naming Utility: a rules database for protein nomenclature.
Nucleic acids research 2010;38(Database issue):D336-9.
2010: Lauren M Brinkac; Tanja Davidsen; Erin Beck; Anuradha Ganapathy; Elisabet Caler; Robert J Dodson; A Scott Durkin; Derek M Harkins; Hernan Lorenzi; Ramana Madupu; Yinong Sebastian; Susmita Shrivastava; Mathangi Thiagarajan; Joshua Orvis; Jaideep P Sundaram; Jonathon Crabtree; Kevin Galens; Yongmei Zhao; Jason M Inman; Robert Montgomery; Seth Schobel; Kevin Galinsky; David M Tanenbaum; Adam Resnick; Nikhat Zafar; Owen R White; Granger Sutton
Pathema: a clade-specific bioinformatics resource center for pathogen research.
Nucleic acids research 2010;38(Database issue):D408-14.
2006: Jonathan H Badger; Timothy R Hoover; Yves V Brun; Ronald M Weiner; Michael T Laub; Gladys Alexandre; Jan Mrázek; Qinghu Ren; Ian Paulsen; Karen E Nelson; Hoda Khouri; Diana Radune; Julia Sosa; Robert J Dodson; Steven A Sullivan; Mary J Rosovitz; Ramana Madupu; Lauren M Brinkac; A Scott Durkin; Sean C Daugherty; Sagar P Kothari; Michelle G Giglio; Liwei Zhou; Daniel H Haft; Jeremy D Selengut; Tanja M Davidsen; Qi Yang; Nikhat Zafar; Naomi L Ward
Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.
Journal of bacteriology 2006;188(19):6841-50.
2006: Brian Palenik; Qinghu Ren; Chris L Dupont; Garry S A Myers; John F Heidelberg; Jonathan H Badger; Ramana Madupu; William C Nelson; Lauren M Brinkac; Robert J Dodson; A Scott Durkin; Sean C Daugherty; Steven A Sullivan; Hoda Khouri; Yasmin Mohamoud; Rebecca Halpin; Ian Paulsen
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(36):13555-9.
2005: Martin Wu; Qinghu Ren; A Scott Durkin; Sean C Daugherty; Lauren M Brinkac; Robert J Dodson; Ramana Madupu; Steven A Sullivan; James F Kolonay; Daniel H Haft; William C Nelson; Luke J Tallon; Kristine M Jones; Luke E Ulrich; Juan M Gonzalez; Igor B Zhulin; Frank Thomson Robb; Jonathan Eisen
Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901.
PLoS genetics 2005;1(5):e65.
2005: Barbara A Methé; Karen E Nelson; Jody W Deming; Bahram Momen; Eugene Melamud; Xijun Zhang; John Moult; Ramana Madupu; William C Nelson; Robert J Dodson; Lauren M Brinkac; Sean C Daugherty; A Scott Durkin; Robert T Deboy; James F Kolonay; Steven A Sullivan; Liwei Zhou; Tanja M Davidsen; Martin Wu; Adrienne L Huston; Matthew Lewis; Bruce Weaver; Janice Weidman; Hoda Khouri; Teresa Utterback; Tamara Feldblyum; Claire M Fraser-Liggett
The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(31):10913-8.
2005: Ian Paulsen; Caroline M Press; Jacques Ravel; Donald Y Kobayashi; Garry S A Myers; Dmitri V Mavrodi; Robert T Deboy; Rekha Seshadri; Qinghu Ren; Ramana Madupu; Robert J Dodson; A Scott Durkin; Lauren M Brinkac; Sean C Daugherty; Steven A Sullivan; Mary J Rosovitz; Michelle G Giglio; Liwei Zhou; Davd J Schneider; Samuel Cartinhour; William C Nelson; Janice Weidman; Kisha Watkins; Kevin Tran; Hoda Khouri; Elizabeth A Pierson; Leland S Pierson; Linda S Thomashow; Joyce E Loper
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Nature biotechnology 2005;23(7):873-8.
2005: Steven R Gill; Derrick E Fouts; Gordon L Archer; Emmanuel F Mongodin; Robert T Deboy; Jacques Ravel; Ian Paulsen; James F Kolonay; Lauren M Brinkac; Maureen J Beanan; Robert J Dodson; Sean C Daugherty; Ramana Madupu; Samuel V Angiuoli; A Scott Durkin; Daniel H Haft; Jessica Vamathevan; Hoda Khouri; Teresa Utterback; Chris Lee; George Dimitrov; Lingxia Jiang; Haiying Qin; Janice Weidman; Kevin Tran; Kathy Kang; Ioana R Hance; Karen E Nelson; Claire M Fraser-Liggett
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.
Journal of bacteriology 2005;187(7):2426-38.
2005: Daniel H Haft; Jeremy D Selengut; Lauren M Brinkac; Nikhat Zafar; Owen R White
Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.
Bioinformatics (Oxford, England) 2005;21(3):293-306.
2005: Rekha Seshadri; Lorenz Adrian; Derrick E Fouts; Jonathan Eisen; Adam M Phillippy; Barbara A Methe; Naomi L Ward; William C Nelson; Robert T Deboy; Hoda Khouri; James F Kolonay; Robert J Dodson; Sean C Daugherty; Lauren M Brinkac; Steven A Sullivan; Ramana Madupu; Karen E Nelson; Katherine H Kang; Marjorie Impraim; Kevin Tran; Jeffrey M Robinson; Heather A Forberger; Claire M Fraser-Liggett; Stephen H Zinder; John F Heidelberg
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.
Science (New York, N.Y.) 2005;307(5706):105-8.
2005: Derrick E Fouts; Emmanuel F Mongodin; Robert Mandrell; William G Miller; David Rasko; Jacques Ravel; Lauren M Brinkac; Robert T Deboy; Craig T Parker; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Ramana Madupu; Steven A Sullivan; Jyoti U Shetty; Mobolanle A Ayodeji; Alla Shvartsbeyn; Michael C Schatz; Jonathan H Badger; Claire M Fraser-Liggett; Karen E Nelson
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.
PLoS biology 2005;3(1):e15.
2004: Martin Wu; Ling V Sun; Jessica Vamathevan; Markus Riegler; Robert T Deboy; Jeremy C Brownlie; Elizabeth A McGraw; William Martin; Christian Esser; Nahal Ahmadinejad; Christian Wiegand; Ramana Madupu; Maureen J Beanan; Lauren M Brinkac; Sean C Daugherty; A Scott Durkin; James F Kolonay; William C Nelson; Yasmin Mohamoud; Perris Lee; Kristi Berry; M Brook Young; Teresa Utterback; Janice Weidman; William C Nierman; Ian Paulsen; Karen E Nelson; Hervé Tettelin; Scott L O'Neill; Jonathan Eisen
Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
PLoS biology 2004;2(3):E69.
2003: Rekha Seshadri; Ian Paulsen; Jonathan Eisen; Timothy D Read; Karen E Nelson; William C Nelson; Naomi L Ward; Hervé Tettelin; Tanja M Davidsen; Maureen J Beanan; Robert T Deboy; Sean C Daugherty; Lauren M Brinkac; Ramana Madupu; Robert J Dodson; Hoda Khouri; Kathy H Lee; Heather A Carty; David Scanlan; Robert A Heinzen; Herbert A Thompson; James E Samuel; Claire M Fraser-Liggett; John F Heidelberg
Complete genome sequence of the Q-fever pathogen Coxiella burnetii.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):5455-60.