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James Brinkley

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TOP 3
A Puget; Landon T Detwiler; J D Franklin; J L V Mejino; James F Brinkley
Spatial-symbolic Query Engine in Anatomy.
James F Brinkley; Landon T Detwiler
A query integrator and manager for the query web.
Shane Steinert-Threlkeld; Raimond L Winslow; Siamak Ardekani; James F Brinkley; Landon T Detwiler; Michael Halle; Ron Kikinis; José L V Mejino; Michael I Miller; J Tilak Ratnanather
Ontological labels for automated location of anatomical shape differences.

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All Publications

2012: A Puget; Landon T Detwiler; J D Franklin; J L V Mejino; James F Brinkley
Spatial-symbolic Query Engine in Anatomy.
Methods of information in medicine 2012;51(6):463-78; discussion 479-88.
2012: James F Brinkley; Landon T Detwiler
A query integrator and manager for the query web.
Journal of biomedical informatics 2012;45(5):975-91.
2012: Shane Steinert-Threlkeld; Raimond L Winslow; Siamak Ardekani; James F Brinkley; Landon T Detwiler; Michael Halle; Ron Kikinis; José L V Mejino; Michael I Miller; J Tilak Ratnanather
Ontological labels for automated location of anatomical shape differences.
Journal of biomedical informatics 2012;45(3):522-7.
2011: Marianne Shaw; Landon T Detwiler; Natalya Noy; James F Brinkley; Dan Suciu
vSPARQL: a view definition language for the semantic web.
Journal of biomedical informatics 2011;44(1):102-17.
2010: Jessica Turner; Jose L V Mejino; James F Brinkley; Landon T Detwiler; Hyo Jong Lee; Maryann E Martone; Daniel L Rubin
Application of neuroanatomical ontologies for neuroimaging data annotation.
Frontiers in neuroinformatics 2010;4():.
2009: Ira J Kalet; José L V Mejino; Vania Wang; Mark Whipple; James F Brinkley
Content-specific auditing of a large scale anatomy ontology.
Journal of biomedical informatics 2009;42(3):540-9.
2009: Landon T Detwiler; Dan Suciu; Joshua D Franklin; Eider B Moore; Andrew V Poliakov; Eunjung S Lee; David P Corina; George A Ojemann; James F Brinkley
Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data.
Frontiers in neuroinformatics 2009;3():2.
2008: Jenny Yuen; Yi Li; Linda Shapiro; John I Clark; Ernest Arnett; E Helene Sage; James F Brinkley
Automated, computerized, feature-based phenotype analysis of slit lamp images of the mouse lens.
Experimental eye research 2008;86(4):562-75.
2007: Nick Anderson; E Sally Lee; J Scott Brockenbrough; Mark E Minie; Sherrilynne Fuller; James F Brinkley; Peter Tarczy-Hornoch
Issues in biomedical research data management and analysis: needs and barriers.
Journal of the American Medical Informatics Association : JAMIA 2007;14(4):478-88.
2007: Eider B Moore; Andrew V Poliakov; Peter Lincoln; James F Brinkley
MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data.
BMC bioinformatics 2007;8():389.
2007: Andrew V Poliakov; Xenia Hertzenberg; Eider B Moore; David P Corina; George A Ojemann; James F Brinkley
Unobtrusive integration of data management with fMRI analysis.
Neuroinformatics 2007;5(1):3-10.
2006: Wayne Warren; Augusto V Agoncillo; Joshua Franklin; James F Brinkley
Intelligent web-based whole body visualization for anatomy education.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():1136.
2006: Christine Fong; James F Brinkley
Customizable Electronic Laboratory Online (CELO): a web-based data management system builder for biomedical research laboratories.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():922.
2006: Landon T Detwiler; James F Brinkley
Custom views of reference ontologies.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():909.
2006: Hao Li; John H Gennari; James F Brinkley
Model driven laboratory information management systems.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():484-8.
2006: James F Brinkley; Dan Suciu; Landon T Detwiler; John H Gennari; Cornelius Rosse
A framework for using reference ontologies as a foundation for the semantic web.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():96-100.
2005: Andrew V Poliakov; Evan Albright; Kevin P Hinshaw; David P Corina; George A Ojemann; Richard F Martin; James F Brinkley
Server-based approach to web visualization of integrated three-dimensional brain imaging data.
Journal of the American Medical Informatics Association : JAMIA 2005;12(2):140-51.
2005: Veronica Smith; Linda Shapiro; Donna Hanlon; Richard Martin; James F Brinkley; Andrew Poliakov; George A Ojemann; David P Corina
Evaluating spatial normalization methods for the human brain.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2005;5():5331-4.
2005: E Sally Lee; Dan Suciu; James F Brinkley
Automatic XQuery generation and generalized visualization for an XML interface to a relational database.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():1019.
2005: S Jeng; K Wang; J Barbero; James F Brinkley; Peter Tarczy-Hornoch
A pilot bridging data integration and analytics: BioMediator and R?
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():995.
2005: Wayne Warren; James F Brinkley
Knowledge-based, interactive, custom anatomical scene creation for medical education: the Biolucida system.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():789-93.
2005: K Wang; Peter Tarczy-Hornoch; R Shaker; Peter Mork; James F Brinkley
BioMediator data integration: beyond genomics to neuroscience data.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():779-83.
2005: David P Corina; Erin K Gibson; Richard Martin; Andrew Poliakov; James F Brinkley; George A Ojemann
Dissociation of action and object naming: evidence from cortical stimulation mapping.
Human brain mapping 2005;24(1):1-10.
2005: Linda Shapiro; Emily Chung; Landon T Detwiler; José L V Mejino; Augusto V Agoncillo; James F Brinkley; Cornelius Rosse
Processes and problems in the formative evaluation of an interface to the Foundational Model of Anatomy knowledge base.
Journal of the American Medical Informatics Association : JAMIA 2005;12(1):35-46.
2004: Landon T Detwiler; Emily Chung; Ann Li; José L V Mejino; Augusto V Agoncillo; James F Brinkley; Cornelius Rosse; Linda Shapiro
A relation-centric query engine for the Foundational Model of Anatomy.
Studies in health technology and informatics 2004;107(Pt 1):341-5.
2003: Peter Mork; James F Brinkley; Cornelius Rosse
OQAFMA Querying agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks.
Journal of biomedical informatics 2003;36(6):501-17.
2003: Richard F Martin; Kurt L Rickard; José L V Mejino; Augusto V Agoncillo; James F Brinkley; Cornelius Rosse
The evolving neuroanatomical component of the Foundational Model of Anatomy.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():927.
2003: Landon T Detwiler; José V Mejino Jr; Cornelius Rosse; James F Brinkley
Efficient web-based navigation of the Foundational Model of Anatomy.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():829.
2003: Zhengming Tang; Yana Kadiyska; Hao Li; Dan Suciu; James F Brinkley
Dynamic XML-based exchange of relational data: application to the Human Brain Project.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():649-53.
2003: Gregory Distelhorst; Vishrut Srivastava; Cornelius Rosse; James F Brinkley
A prototype natural language interface to a large complex knowledge base, the Foundational Model of Anatomy.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():200-4.
2003: S Kim; James F Brinkley; Cornelius Rosse
Profile of on-line anatomy information resources: design and instructional implications.
Clinical anatomy (New York, N.Y.) 2003;16(1):55-71.
2002: Rex M Jakobovits; Cornelius Rosse; James F Brinkley
WIRM: an open source toolkit for building biomedical web applications.
Journal of the American Medical Informatics Association : JAMIA 2002;9(6):557-70.
2002: Kevin P Hinshaw; Andrew V Poliakov; Eider B Moore; Richard F Martin; Linda Shapiro; James F Brinkley
Shape-based cortical surface segmentation for visualization brain mapping.
NeuroImage 2002;16(2):295-316.
2002: James F Brinkley; Cornelius Rosse
Imaging and the Human Brain Project: a review.
Methods of information in medicine 2002;41(4):245-60.
2001: Andrew V Poliakov; E Albright; David P Corina; George A Ojemann; Richard F Martin; James F Brinkley
Server-based approach to web visualization of integrated 3-D medical image data.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():533-7.
2001: Richard F Martin; José L V Mejino; Douglas M Bowden; James F Brinkley; Cornelius Rosse
Foundational model of neuroanatomy: implications for the Human Brain Project.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():438-42.
2001: Rex M Jakobovits; James F Brinkley; Cornelius Rosse; Ed Weinberger
Enabling clinicians, researchers, and educators to build custom web-based biomedical information systems.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():279-83.
2001: B Campbell; Cornelius Rosse; James F Brinkley
The Virtual Anatomy Lab: a hands-on anatomy learning environment.
Studies in health technology and informatics 2001;81():85-7.
2000: Rex M Jakobovits; SG Soderland; RK Taira; James F Brinkley
Requirements of a Web-based experiment management system.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():374-8.
1999: David P Corina; S L McBurney; C Dodrill; Kevin P Hinshaw; James F Brinkley; George A Ojemann
Functional roles of Broca's area and SMG: evidence from cortical stimulation mapping in a deaf signer.
NeuroImage 1999;10(5):570-81.
1999: B A Wong; Cornelius Rosse; James F Brinkley
Semi-automatic scene generation using the Digital Anatomist Foundational Model.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():637-41.
1999: S Kim; James F Brinkley; Cornelius Rosse
Design features of on-line anatomy information resources: a comparison with the Digital Anatomist.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():560-4.
1999: Andrew V Poliakov; Kevin P Hinshaw; Cornelius Rosse; James F Brinkley
Integration and visualization of multimodality brain data for language mapping.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():349-53.
1999: Ira J Kalet; J Wu; M Lease; Mary Austin-Seymour; James F Brinkley; Cornelius Rosse
Anatomical information in radiation treatment planning.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():291-5.
1998: Kevin P Hinshaw; James F Brinkley
Incorporating constraint-based shape models into an interactive system for functional brain mapping.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():921-5.
1998: James F Brinkley; Cornelius Rosse
Requirements for an on-line knowledge-based anatomy information system.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():892-6.
1998: Cornelius Rosse; Linda Shapiro; James F Brinkley
The digital anatomist foundational model: principles for defining and structuring its concept domain.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():820-4.
1998: Cornelius Rosse; José L V Mejino; BR Modayur; Rex M Jakobovits; Kevin P Hinshaw; James F Brinkley
Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base.
Journal of the American Medical Informatics Association : JAMIA 1998;5(1):17-40.
1997: James F Brinkley; Suzanne F Bradley; J W Sundsten; Cornelius Rosse
The digital anatomist information system and its use in the generation and delivery of Web-based anatomy atlases.
Computers and biomedical research, an international journal 1997;30(6):472-503.
1997: BR Modayur; John Prothero; George A Ojemann; Kenneth R Maravilla; James F Brinkley
Visualization-based mapping of language function in the brain.
NeuroImage 1997;6(4):245-58.
1997: James F Brinkley; Cornelius Rosse
The Digital Anatomist distributed framework and its applications to knowledge-based medical imaging.
Journal of the American Medical Informatics Association : JAMIA 1997;4(3):165-83.
1997: Kevin P Hinshaw; James F Brinkley
Using 3-D shape models to guide segmentation of MR brain images.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1997;():469-73.
1997: Rex M Jakobovits; James F Brinkley
Managing medical research data with a Web-Interfacing Repository Manager.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1997;():454-8.
1997: BR Modayur; Rex M Jakobovits; Kenneth R Maravilla; George A Ojemann; James F Brinkley
Evaluation of a visualization-based approach to functional brain mapping.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1997;():429-33.
1996: Rex M Jakobovits; B Modayur; James F Brinkley
A Web-based repository manager for brain mapping data.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():309-13.
1996: B R Modayur; John Prothero; Cornelius Rosse; Rex M Jakobovits; James F Brinkley
Visualization and mapping of neurosurgical functional brain data onto a 3-D MR-based model of the brain surface.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():304-8.
1995: Cornelius Rosse; M Ben Said; K R Eno; James F Brinkley
Enhancements of anatomical information in UMLS knowledge sources.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():873-7.
1995: S W Bradley; Cornelius Rosse; James F Brinkley
Web-based access to an online atlas of anatomy: the Digital Anatomist Common Gateway Interface.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():512-6.
1994: D J Dailey; K R Eno; James F Brinkley
Performance evaluation of a distance learning program.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():76-80.
1993: James F Brinkley; K Eno; J W Sundsten
Knowledge-based client-server approach to structural information retrieval: the Digital Anatomist Browser.
Computer methods and programs in biomedicine 1993;40(2):131-45.
1993: James F Brinkley
A flexible, generic model for anatomic shape: application to interactive two-dimensional medical image segmentation and matching.
Computers and biomedical research, an international journal 1993;26(2):121-42.
1993: D J Dailey; K Eno; G L Zick; James F Brinkley
A network model for wide area access to structural information.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():497-501.
1992: James F Brinkley
Hierarchical geometric constraint networks as a representation for spatial structural knowledge.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():140-4.
1991: K Eno; J W Sundsten; James F Brinkley
A multimedia Anatomy Browser incorporating a knowledge base and 3D images.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1991;():727-31.
1991: James F Brinkley
Spatial anatomic knowledge for 2-D interactive medical image segmentation and matching.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1991;():460-4.