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John Yates

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TOP 3
Kristofor J Webb; Tao Xu; Sung Kyu Park; John R Yates
Modified MuDPIT Separation Identified 4488 Proteins in a System-wide Analysis of Quiescence in Yeast.
Pierre-Marie Dehé; Stéphane Coulon; Bertrand Llorente; Paul Russell; Sarah Scaglione; Paul Shanahan; Arato Takedachi; James A Wohlschlegel; John R Yates; Pierre-Henri L Gaillard
Regulation of Mus81-Eme1 Holliday junction resolvase in response to DNA damage.
Matthew D Shoulders; Andrew I Su; Patricia G Tu; Joseph C Genereux; Jeffery W Kelly; James J Moresco; Lisa M Ryno; Chunlei Wu; John R Yates; R Luke Wiseman
Stress-Independent Activation of XBP1s and/or ATF6 Reveals Three Functionally Diverse ER Proteostasis Environments.

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All Publications

2013: Kristofor J Webb; Tao Xu; Sung Kyu Park; John R Yates
Modified MuDPIT Separation Identified 4488 Proteins in a System-wide Analysis of Quiescence in Yeast.
Journal of proteome research 2013;12(5):2177-84.
2013: Pierre-Marie Dehé; Stéphane Coulon; Bertrand Llorente; Paul Russell; Sarah Scaglione; Paul Shanahan; Arato Takedachi; James A Wohlschlegel; John R Yates; Pierre-Henri L Gaillard
Regulation of Mus81-Eme1 Holliday junction resolvase in response to DNA damage.
Nature structural & molecular biology 2013;20(5):598-603.
2013: Matthew D Shoulders; Andrew I Su; Patricia G Tu; Joseph C Genereux; Jeffery W Kelly; James J Moresco; Lisa M Ryno; Chunlei Wu; John R Yates; R Luke Wiseman
Stress-Independent Activation of XBP1s and/or ATF6 Reveals Three Functionally Diverse ER Proteostasis Environments.
Cell reports 2013;3(4):1279-92.
2013: Yaoyang Zhang; Moon-Chang Baek; Bryan R Fonslow; Bing Shan; John R Yates
Protein Analysis by Shotgun/Bottom-up Proteomics.
Chemical reviews 2013;113(4):2343-94.
2013: Derrick Sek Tong Ong; Yun Lei Tan; Ya-Juan Wang; John R Yates; Ting-Wei Mu; Jeffery W Kelly
FKBP10 depletion enhances glucocerebrosidase proteostasis in Gaucher disease fibroblasts.
Chemistry & biology 2013;20(3):403-15.
2013: Phillip A Dumesic; David P Bartel; Changbin Chen; Ines A Drinnenberg; James J Moresco; Prashanthi Natarajan; Benjamin J Schiller; James Thompson; John R Yates; Hiten D Madhani
Stalled spliceosomes are a signal for RNAi-mediated genome defense.
Cell 2013;152(5):957-68.
2013: Keiji Okamoto; Iliana Ouzounov; John R Yates; Cristina Bartocci; Jolene K Diedrich; Eros Lazzerini Denchi
A two-step mechanism for TRF2-mediated chromosome-end protection.
Nature 2013;494(7438):502-5.
2013: Margaret T Butko; Claire Delahunty; Ford Ebner; Beth Friedman; Jeffrey N Savas; John R Yates; Roger Y Tsien
In vivo quantitative proteomics of somatosensory cortical synapses shows which protein levels are modulated by sensory deprivation.
Proceedings of the National Academy of Sciences of the United States of America 2013;110(8):E726-35.
2013: John R Yates
The revolution and evolution of shotgun proteomics for large-scale proteome analysis.
Journal of the American Chemical Society 2013;135(5):1629-40.
2013: Hailong Wang; Catherine C L Wong; John R Yates; Qingyuan Zhu; Michael W Berns; David J Chen; Longchuan Chen; Xuemei Han; Patty Yi-Hwa Hwang; Zhengping Shao; Linda Z Shi; Lan N Truong; Xiaohua Wu
The interaction of CtIP and Nbs1 connects CDK and ATM to regulate HR-mediated double-strand break repair.
PLoS genetics 2013;9(2):e1003277.
2013: Nicholas A Lyons; Jolene K Diedrich; Bryan R Fonslow; John R Yates; David O Morgan
Sequential primed kinases create a damage-responsive phosphodegron on Eco1.
Nature structural & molecular biology 2013;20(2):194-201.
2013: Catherine C L Wong; Ruedi Aebersold; Daniel Cociorva; Christine A Miller; Craig Monell; Alexander Schmidt; John R Yates
Proteomics of Pyrococcus furiosus (Pfu): Identification of Extracted Proteins by Three Independent Methods.
Journal of proteome research 2013;12(2):763-70.
2013: Navin Rauniyar; Benbo Gao; Daniel B McClatchy; John R Yates
Comparison of protein expression ratios observed by sixplex and duplex TMT labeling method.
Journal of proteome research 2013;12(2):1031-9.
2013: Bryan R Fonslow; Sung Kyu Park; Benjamin D Stein; Kristofor J Webb; Tao Xu; Jeong Choi; John R Yates
Digestion and depletion of abundant proteins improves proteomic coverage.
Nature methods 2013;10(1):54-6.
2012: Yueju Wang; Catherine C L Wong; Bryan R Fonslow; Aleksey Nakorchevsky; John R Yates
Improving the comprehensiveness and sensitivity of sheathless capillary electrophoresis-tandem mass spectrometry for proteomic analysis.
Analytical chemistry 2012;84(20):8505-13.
2012: Satoshi Kurosaka; N Adrian Leu; Wilfried Mai; Ivan Pavlov; Dilson E Rassier; Paula Aver Bretanha Ribeiro; Sougata Saha; Junling Wang; Tao Xu; John R Yates; Ralph Bunte; Anabelle Cornachione; Xuemei Han; Anna Kashina
Arginylation regulates myofibrils to maintain heart function and prevent dilated cardiomyopathy.
Journal of molecular and cellular cardiology 2012;53(3):333-41.
2012: Minghua Nie; John Prudden; Ajay A Vashisht; James Wohlschlegel; John R Yates; Aaron Aslanian; Johanna Heideker; Michael N Boddy
Dual recruitment of Cdc48 (p97)-Ufd1-Npl4 ubiquitin-selective segregase by small ubiquitin-like modifier protein (SUMO) and ubiquitin in SUMO-targeted ubiquitin ligase-mediated genome stability functions.
The Journal of biological chemistry 2012;287(35):29610-9.
2012: Hai-Bin Ruan; Varman T Samuel; Jay Prakash Singh; Jing Wu; Sascha Azarhoush; Anton M Bennett; Xuemei Han; Min-Dian Li; Kevin Qian; John R Yates; Lin Zhao; Xiaoyong Yang
O-GlcNAc transferase/host cell factor C1 complex regulates gluconeogenesis by modulating PGC-1α stability.
Cell metabolism 2012;16(2):226-37.
2012: Natalie F Shanks; John R Yates; Yasuko Noda; Souichi Oe; Jeffrey N Savas; Ondrej Cais; Anirvan Ghosh; Ingo H Greger; Atsushi Hirao; Tomohiko Maruo; Terunaga Nakagawa
Differences in AMPA and kainate receptor interactomes facilitate identification of AMPA receptor auxiliary subunit GSG1L.
Cell reports 2012;1(6):590-8.
2012: Paulo C Carvalho; John R Yates; Valmir C Barbosa
Improving the TFold test for differential shotgun proteomics.
Bioinformatics (Oxford, England) 2012;28(12):1652-4.
2012: Wei-Jong Shia; Ming Yan; John R Yates; Yukiko Komeno; Miao-Chia Lo; Shinobu Matsuura; Stephen D Nimer; Akiko J Okumura; Ali Sarkeshik; Xinyang Zhao; Dong-Er Zhang
PRMT1 interacts with AML1-ETO to promote its transcriptional activation and progenitor cell proliferative potential.
Blood 2012;119(21):4953-62.
2012: Bryan R Fonslow; Sherry Niessen; Sung Kyu Park; Meha Singh; Catherine C L Wong; Tao Xu; Paulo C Carvalho; Jeong Choi; John R Yates
Single-step inline hydroxyapatite enrichment facilitates identification and quantitation of phosphopeptides from mass-limited proteomes with MudPIT.
Journal of proteome research 2012;11(5):2697-709.
2012: John R Yates; Daniel Cociorva; Claire M Delahunty; Sung Kyu Robin Park; Jeffrey N Savas; Tao Xu; Paulo Costa Carvalho
Toward objective evaluation of proteomic algorithms.
Nature methods 2012;9(5):455-6.
2012: Daniel B McClatchy; Sung Kyu Park; Ji Hyoung Lee; Lujian Liao; John R Yates
Dynamics of subcellular proteomes during brain development.
Journal of proteome research 2012;11(4):2467-79.
2012: Anna Travesa; John R Yates; Aaron S. Aslanian; Robertus A M de Bruin; Marisela Guaderrama; Trey Ideker; Tatyana I Kalashnikova; Dwight Kuo; Marcus B Smolka; Kevin Thai; Curt Wittenberg
DNA replication stress differentially regulates G1/S genes via Rad53-dependent inactivation of Nrm1.
The EMBO journal 2012;31(7):1811-22.
2012: Paulo C Carvalho; Daniel Cociorva; Juliana S G Fischer; Jonas Perales; Richard H Valente; Tao Xu; John R Yates; Tiago S Balbuena; Valmir C Barbosa
Search engine processor: Filtering and organizing peptide spectrum matches.
Proteomics 2012;12(7):944-9.
2012: Matthew L O'Sullivan; Stefanie Otto-Hitt; Jeffrey N Savas; John R Yates; Davide Comoletti; Joris de Wit; Anirvan Ghosh
FLRT proteins are endogenous latrophilin ligands and regulate excitatory synapse development.
Neuron 2012;73(5):903-10.
2012: Hiroaki Ishikawa; James Thompson; John R Yates; Wallace F Marshall
Proteomic analysis of mammalian primary cilia.
Current biology : CB 2012;22(5):414-9.
2012: Jeffrey N Savas; Brandon H Toyama; Tao Xu; John R Yates; Martin W Hetzer
Extremely long-lived nuclear pore proteins in the rat brain.
Science (New York, N.Y.) 2012;335(6071):942.
2012: Lujian Liao; Anton Maximov; Richard C Sando; Peter W Vanderklish; John B Farnum; John R Yates
15N-labeled brain enables quantification of proteome and phosphoproteome in cultured primary neurons.
Journal of proteome research 2012;11(2):1341-53.
2012: Lindsey A Miles; Caitlin M Parmer; John R Yates; Nicholas M Andronicos; Nagyung Baik; Emily I Chen; Jenna E Diggs; Mark P Kamps; Sophia Khaldoyanidi; William B Kiosses; Shahrzad Lighvani; Robert J Parmer
The plasminogen receptor, Plg-R(KT), and macrophage function.
Journal of biomedicine & biotechnology 2012;2012():250464.
2012: Judith A Coppinger; Darren M Hutt; Atanas Koulov; Sandra Pankow; Abbas Razvi; John R Yates; William E Balch
A chaperone trap contributes to the onset of cystic fibrosis.
PloS one 2012;7(5):e37682.
2011: Sougata Saha; Catherine C L Wong; Tao Xu; John R Yates; Henry Zebroski; Suk Namgoong; Anna Kashina
Arginylation and methylation double up to regulate nuclear proteins and nuclear architecture in vivo.
Chemistry & biology 2011;18(11):1369-78.
2011: Michele H Jones; Jamie M Keck; Catherine C L Wong; Tao Xu; John R Yates; Mark Winey
Cell cycle phosphorylation of mitotic exit network (MEN) proteins.
Cell cycle (Georgetown, Tex.) 2011;10(20):3435-40.
2011: Rodrigo Barboza; Valmir C Barbosa; Daniel Cociorva; Felipe M G França; Jonas Perales; Richard H Valente; Tao Xu; John R Yates; Paulo C Carvalho
Can the false-discovery rate be misleading?
Proteomics 2011;11(20):4105-8.
2011: Yevgeniy A Grigoryev; Traver Hart; Steven R Head; Sunil M Kurian; Aleksey A Nakorchevsky; Daniel Campbell; Caifu Chen; John R Yates; Daniel R Salomon
MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes.
Journal of immunology (Baltimore, Md. : 1950) 2011;187(5):2233-43.
2011: Tineke Lauwaet; David S Reiner; Edwin Romijn; Sheila A Shah; Alias J Smith; Catherine C L Wong; John R Yates; Barbara J Davids; Frances D Gillin
Mining the Giardia genome and proteome for conserved and unique basal body proteins.
International journal for parasitology 2011;41(10):1079-92.
2011: Jonathan R Hart; Lujian Liao; John R Yates; Peter K Vogt
Essential role of Stat3 in PI3K-induced oncogenic transformation.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(32):13247-52.
2011: Bryan R Fonslow; Steve Freeby; Aleksey Nakorchevsky; Aran Paulus; Tao Xu; Katrina Academia; Paulo C Carvalho; John R Yates
Improvements in proteomic metrics of low abundance proteins through proteome equalization using ProteoMiner prior to MudPIT.
Journal of proteome research 2011;10(8):3690-700.
2011: Jeffrey N Savas; Benjamin D Stein; Christine C Wu; John R Yates
Mass spectrometry accelerates membrane protein analysis.
Trends in biochemical sciences 2011;36(7):388-96.
2011: Jamie M Keck; Mario Niepel; Michael P Rout; Arend Sidow; Jackie Vogel; Jonathan Binkley; Daici Chen; Eric P Holinger; Sue L Jaspersen; Michele H Jones; Catherine C L Wong; Tao Xu; John R Yates; Tao Xu
A cell cycle phosphoproteome of the yeast centrosome.
Science (New York, N.Y.) 2011;332(6037):1557-61.
2011: Adam C Jones; Emily A Monroe; Sheila Podell; Wolfgang R Hess; Sven Klages; Eduardo Esquenazi; Sherry Niessen; Heather Hoover; Michael Rothmann; Roger S Lasken; John R Yates; Richard Reinhardt; Michael Kube; Michael D Burkart; Eric E Allen; Pieter dorrestein; William H Gerwick; Lena Gerwick
Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(21):8815-20.
2011: Biao Wang; Noel Moya; Sherry Niessen; Heather Hoover; Maria M Mihaylova; Reuben J Shaw; John R Yates; Wolfgang H Fischer; John B Thomas; Marc Montminy
A hormone-dependent module regulating energy balance.
Cell 2011;145(4):596-606.
2011: Chang-Young Jang; Judith A Coppinger; John R Yates; Guowei Fang
Mitotic kinases regulate MT-polymerizing/MT-bundling activity of DDA3.
Biochemical and biophysical research communications 2011;408(1):174-9.
2011: Jonathan Ross Hart; Lujian Liao; Lynn Ueno; John R Yates; Peter K Vogt
Protein expression profiles of C3H 10T1/2 murine fibroblasts and of isogenic cells transformed by the H1047R mutant of phosphoinositide 3-kinase (PI3K).
Cell cycle (Georgetown, Tex.) 2011;10(6):971-6.
2011: Junling Wang; Xuemei Han; Sougata Saha; Tao Xu; Reena Rai; Fangliang Zhang; Yuri I Wolf; Alexey Wolfson; John R Yates; Anna Kashina
Arginyltransferase is an ATP-independent self-regulating enzyme that forms distinct functional complexes in vivo.
Chemistry & biology 2011;18(1):121-30.
2011: Esther Zanin; Shirin Bahmanyar; Ana Carvalho; Iain M Cheeseman; Julien Dumont; Reto Gassmann; Maddox Paul; Sherry Niessen; Karen Oegema; John R Yates; Arshad Desai
Affinity purification of protein complexes in C. elegans.
Methods in cell biology 2011;106():289-322.
2011: William E Balch; John R Yates
Application of mass spectrometry to study proteomics and interactomics in cystic fibrosis.
Methods in molecular biology (Clifton, N.J.) 2011;742():227-47.
2010: Quan Li; Christine Vande Velde; Adrian Israelson; Jing Xie; Aaron O Bailey; Meng-Qui Dong; Seung-Joo Chun; Tamal Roy; Leah Winer; John R Yates; Roderick A Capaldi; Don W Cleveland; Timothy M Miller
ALS-linked mutant superoxide dismutase 1 (SOD1) alters mitochondrial protein composition and decreases protein import.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(49):21146-51.
2010: Kiran S Ambatipudi; Fred K Hagen; Claire M Delahunty; Xuemei Han; Rubina Shafi; Jennifer Hryhorenko; Stacy Gregoire; Robert E Marquis; James E Melvin; Hyun Koo; John R Yates
Human common salivary protein 1 (CSP-1) promotes binding of Streptococcus mutans to experimental salivary pellicle and glucans formed on hydroxyapatite surface.
Journal of proteome research 2010;9(12):6605-14.
2010: James J Moresco; Paulo C Carvalho; John R Yates
Identifying components of protein complexes in C. elegans using co-immunoprecipitation and mass spectrometry.
Journal of proteomics 2010;73(11):2198-204.
2010: Qingkai Yang; Xianming Deng; Bingwen Lu; Michael Cameron; Colleen Fearns; Matthew P Patricelli; John R Yates; Nathanael S Gray; Jiing-Dwan Lee
Pharmacological inhibition of BMK1 suppresses tumor growth through promyelocytic leukemia protein.
Cancer cell 2010;18(3):258-67.
2010: Bryan R Fonslow; Seong A Kang; Daniel R Gestaut; Beth Graczyk; Trisha N Davis; David M Sabatini; John R Yates
Native capillary isoelectric focusing for the separation of protein complex isoforms and subcomplexes.
Analytical chemistry 2010;82(15):6643-51.
2010: Rachel H Roberts-Galbraith; Melanie D Ohi; Bryan A Ballif; Jun-Song Chen; Ian McLeod; W Hayes McDonald; Steven P Gygi; John R Yates; Kathleen L Gould
Dephosphorylation of F-BAR protein Cdc15 modulates its conformation and stimulates its scaffolding activity at the cell division site.
Molecular cell 2010;39(1):86-99.
2010: Emiley Pham; Leslie Crews; Kiren Ubhi; Lawrence A Hansen; Anthony Adame; Anna Cartier; David P Salmon; Douglas Galasko; Sarah Michael; Jeffrey N Savas; John R Yates; Charles Glabe; Eliezer Masliah
Progressive accumulation of amyloid-beta oligomers in Alzheimer's disease and in amyloid precursor protein transgenic mice is accompanied by selective alterations in synaptic scaffold proteins.
The FEBS journal 2010;277(14):3051-67.
2010: Yingchun Wang; Jonathan A Kelber; Hop S Tran Cao; Greg T Cantin; Rui Lin; Wei Wang; Sharmeela Kaushal; Jeanne M Bristow; Thomas S Edgington; Robert M Hoffman; Michael Bouvet; John R Yates; Richard L Klemke
Pseudopodium-enriched atypical kinase 1 regulates the cytoskeleton and cancer progression [corrected].
Proceedings of the National Academy of Sciences of the United States of America 2010;107(24):10920-5.
2010: Graham M West; Chandra L Tucker; Tao Xu; Sung Kyu Park; Xuemei Han; John R Yates; Michael C Fitzgerald
Quantitative proteomics approach for identifying protein-drug interactions in complex mixtures using protein stability measurements.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(20):9078-82.
2010: Nathalie Spielewoy; Marisela Guaderrama; James A Wohlschlegel; Mabelle Ashe; John R Yates; Curt Wittenberg
Npr2, yeast homolog of the human tumor suppressor NPRL2, is a target of Grr1 required for adaptation to growth on diverse nitrogen sources.
Eukaryotic cell 2010;9(4):592-601.
2010: Paulo C Carvalho; Xuemei Han; Tao Xu; Daniel Cociorva; Maria da Gloria Carvalho; Valmir C Barbosa; John R Yates
XDIA: improving on the label-free data-independent analysis.
Bioinformatics (Oxford, England) 2010;26(6):847-8.
2010: Juliana de Saldanha da Gama Fischer; Lujian Liao; Paulo C Carvalho; Valmir C Barbosa; Gilberto B Domont; Maria da Gloria da Costa Carvalho; John R Yates
Dynamic proteomic overview of glioblastoma cells (A172) exposed to perillyl alcohol.
Journal of proteomics 2010;73(5):1018-27.
2010: Chang-Young Jang; Judith A Coppinger; John R Yates; Guowei Fang
Phospho-regulation of DDA3 function in mitosis.
Biochemical and biophysical research communications 2010;393(2):259-63.
2010: Sung Kyu Park; John R Yates
Census for proteome quantification.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2010;Chapter 13():Unit 13.12.1-11.
2010: Stephen P Baker; Jennifer Phillips; Scott Anderson; Qifeng Qiu; Jeffrey Shabanowitz; M Mitchell Smith; John R Yates; Donald F Hunt; Patrick A Grant
Histone H3 Thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae.
Nature cell biology 2010;12(3):294-8.
2010: Nicholas M Andronicos; Emily I Chen; Nagyung Baik; Hongdong Bai; Caitlin M Parmer; William B Kiosses; Mark P Kamps; John R Yates; Robert J Parmer; Lindsey A Miles
Proteomics-based discovery of a novel, structurally unique, and developmentally regulated plasminogen receptor, Plg-RKT, a major regulator of cell surface plasminogen activation.
Blood 2010;115(7):1319-30.
2010: Aleksey Nakorchevsky; Johannes A Hewel; Sunil M Kurian; Tony Mondala; Daniel Campbell; Steven R Head; Christopher L Marsh; John R Yates; Daniel R Salomon
Molecular mechanisms of chronic kidney transplant rejection via large-scale proteogenomic analysis of tissue biopsies.
Journal of the American Society of Nephrology : JASN 2010;21(2):362-73.
2010: Darren M Hutt; David Herman; Ana Rodrigues; Sabrina Noel; Joseph M Pilewski; Jeanne Matteson; Ben Hoch; Wendy Kellner; Jeffery W Kelly; Andre Schmidt; Philip J Thomas; Yoshihiro Matsumura; William R Skach; Martina Gentzsch; John R Riordan; Eric J Sorscher; Tsukasa Okiyoneda; John R Yates; Gergely L Lukacs; Raymond A Frizzell; Gerard Manning; Joel M Gottesfeld; William E Balch
Reduced histone deacetylase 7 activity restores function to misfolded CFTR in cystic fibrosis.
Nature chemical biology 2010;6(1):25-33.
2010: Noriyuki Nishimura; Ali Sarkeshik; Kazumasa Nito; Sang-Youl Park; Angela Wang; Paulo C Carvalho; Stephen Lee; Daniel F Caddell; Sean R Cutler; joanne chory; John R Yates; Julian I Schroeder
PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis.
The Plant journal : for cell and molecular biology 2010;61(2):290-9.
2009: Joris de Wit; Emily Sylwestrak; Matthew L O'Sullivan; Stefanie Otto; Katie Tiglio; Jeffrey N Savas; John R Yates; Davide Comoletti; Palmer Taylor; Anirvan Ghosh
LRRTM2 interacts with Neurexin1 and regulates excitatory synapse formation.
Neuron 2009;64(6):799-806.
2009: Claire L Dovey; Aaron Aslanian; Sevil Sofueva; John R Yates; Paul Russell
Mms1-Mms22 complex protects genome integrity in Schizosaccharomyces pombe.
DNA repair 2009;8(12):1390-9.
2009: Abhi K Rao; Yvonne S Ziegler; Ian X McLeod; John R Yates; Carol Curtis
Thioredoxin and thioredoxin reductase influence estrogen receptor alpha-mediated gene expression in human breast cancer cells.
Journal of molecular endocrinology 2009;43(6):251-61.
2009: Weifeng Gu; Masaki Shirayama; Darryl Conte; Jessica Vasale; Pedro J Batista; Julie M Claycomb; James J Moresco; Elaine M Youngman; Jennifer Keys; Matthew J Stoltz; Chun-Chieh G Chen; Daniel A Chaves; Shenghua Duan; Kristin D Kasschau; Noah Fahlgren; John R Yates; Shohei Mitani; James C Carrington; Craig C Mello
Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.
Molecular cell 2009;36(2):231-44.
2009: Paulo C Carvalho; Tao Xu; Xuemei Han; Daniel Cociorva; Valmir C Barbosa; John R Yates
YADA: a tool for taking the most out of high-resolution spectra.
Bioinformatics (Oxford, England) 2009;25(20):2734-6.
2009: Kalpana Lal; Elizabeth Bromley; Richard Oakes; Judith Helena Prieto; Sanya J Sanderson; Dominic Kurian; Lawrence Hunt; John R Yates; Jonathan Wastling; Robert E Sinden; Fiona M Tomley
Proteomic comparison of four Eimeria tenella life-cycle stages: unsporulated oocyst, sporulated oocyst, sporozoite and second-generation merozoite.
Proteomics 2009;9(19):4566-76.
2009: Alexander Dammermann; Hayley Pemble; Brian J Mitchell; Ian X McLeod; John R Yates; Chris Kintner; Arshad Desai; Karen Oegema
The hydrolethalus syndrome protein HYLS-1 links core centriole structure to cilia formation.
Genes & development 2009;23(17):2046-59.
2009: Carol D Curtis; Daniel L Thorngren; Yvonne S Ziegler; Ali Sarkeshik; John R Yates; Carol Curtis
Apurinic/apyrimidinic endonuclease 1 alters estrogen receptor activity and estrogen-responsive gene expression.
Molecular endocrinology (Baltimore, Md.) 2009;23(9):1346-59.
2009: Catherine C L Wong; Daniel Cociorva; John D Venable; Tao Xu; John R Yates
Comparison of different signal thresholds on data dependent sampling in Orbitrap and LTQ mass spectrometry for the identification of peptides and proteins in complex mixtures.
Journal of the American Society for Mass Spectrometry 2009;20(8):1405-14.
2009: Li-Chiou Chuang; Leonardo K Teixeira; James Wohlschlegel; Martha Henze; John R Yates; Juan Méndez; Steven I Reed
Phosphorylation of Mcm2 by Cdc7 promotes pre-replication complex assembly during cell-cycle re-entry.
Molecular cell 2009;35(2):206-16.
2009: Lujian Liao; Daniel B McClatchy; John R Yates
Shotgun proteomics in neuroscience.
Neuron 2009;63(1):12-26.
2009: Samira Fekairi; Sarah Scaglione; Charly Chahwan; Ewan R Taylor; Agnès Tissier; Stéphane Coulon; Meng-Qiu Dong; Cristian Ruse; John R Yates; Paul Russell; Robert P Fuchs; Clare H McGowan; Pierre-Henri L Gaillard
Human SLX4 is a Holliday junction resolvase subunit that binds multiple DNA repair/recombination endonucleases.
Cell 2009;138(1):78-89.
2009: Sung Hugh Choi; Marie-Pierre Péli-Gulli; Iain Mcleod; Ali Sarkeshik; John R Yates; Viesturs Simanis; Dannel McCollum
Phosphorylation state defines discrete roles for monopolin in chromosome attachment and spindle elongation.
Current biology : CB 2009;19(12):985-95.
2009: Eric P Holinger; William M Old; Thomas H Giddings; Catherine Wong; John R Yates; Mark Winey
Budding yeast centrosome duplication requires stabilization of Spc29 via Mps1-mediated phosphorylation.
The Journal of biological chemistry 2009;284(19):12949-55.
2009: Daniel R. Foltz; Lars E T Jansen; Aaron O Bailey; John R Yates; Emily A Bassett; Stacey Wood; Ben E Black; Don W Cleveland
Centromere-specific assembly of CENP-a nucleosomes is mediated by HJURP.
Cell 2009;137(3):472-84.
2009: Chang-Young Jang; Judith A Coppinger; Akiko Seki; John R Yates; Guowei Fang
Plk1 and Aurora A regulate the depolymerase activity and the cellular localization of Kif2a.
Journal of cell science 2009;122(Pt 9):1334-41.
2009: Yanling Chen; bingwen lu; Qingkai Yang; Colleen Fearns; John R Yates; Jiing-Dwan Lee
Combined integrin phosphoproteomic analyses and small interfering RNA--based functional screening identify key regulators for cancer cell adhesion and migration.
Cancer research 2009;69(8):3713-20.
2009: Bryan R Fonslow; John R Yates
Capillary electrophoresis applied to proteomic analysis.
Journal of separation science 2009;32(8):1175-88.
2009: Teresa R Shock; James Thompson; John R Yates; Hiten D Madhani
Hog1 mitogen-activated protein kinase (MAPK) interrupts signal transduction between the Kss1 MAPK and the Tec1 transcription factor to maintain pathway specificity.
Eukaryotic cell 2009;8(4):606-16.
2009: Run-Qiang Chen; Qing-Kai Yang; bingwen lu; Wei Yi; Greg T Cantin; Yan-Ling Chen; Colleen Fearns; John R Yates; Jiing-Dwan Lee
CDC25B mediates rapamycin-induced oncogenic responses in cancer cells.
Cancer research 2009;69(6):2663-8.
2009: Sung Kyu Park; Lujian Liao; Jin Young Kim; John R Yates
A computational approach to correct arginine-to-proline conversion in quantitative proteomics.
Nature methods 2009;6(3):184-5.
2009: Kalpana Lal; Judith Helena Prieto; Elizabeth Bromley; Sanya J Sanderson; John R Yates; Jonathan Wastling; Fiona M Tomley; Robert E Sinden
Characterisation of Plasmodium invasive organelles; an ookinete microneme proteome.
Proteomics 2009;9(5):1142-51.
2009: Paulo C Carvalho; Daniel Cociorva; Catherine C L Wong; Maria da Gloria da C Carvalho; Valmir C Barbosa; John R Yates
Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra.
Analytical chemistry 2009;81(5):1996-2003.
2009: Jiou Wang; George W Farr; Caroline J Zeiss; Diego Rodríguez Gil; Jean H Wilson; Krystyna J Furtak; D Thomas Rutkowski; Randal J Kaufman; Cristian I Ruse; John R Yates; Steve Perrin; Mel B Feany; Arthur L Horwich
Progressive aggregation despite chaperone associations of a mutant SOD1-YFP in transgenic mice that develop ALS.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(5):1392-7.
2009: Bingwen Lu; Tao Xu; Sung Kyu Park; Daniel B McClatchy; Lujian Liao; John R Yates
Shotgun protein identification and quantification by mass spectrometry in neuroproteomics.
Methods in molecular biology (Clifton, N.J.) 2009;566():229-59.
2009: Yevgeniy A Grigoryev; Sunil M Kurian; Aleksey A Nakorchevskiy; John P Burke; Daniel Campbell; Steven R Head; Jun Deng; Aaron B Kantor; John R Yates; Daniel R Salomon
Genome-wide analysis of immune activation in human T and B cells reveals distinct classes of alternatively spliced genes.
PloS one 2009;4(11):e7906.
2009: Renata Usaite; Michael C Jewett; Ana Paula Oliveira; John R Yates; Lisbeth Olsson; Jens Nielsen
Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator.
Molecular systems biology 2009;5():319.
2009: Sunil M Kurian; Raymond Heilman; Tony Mondala; Aleksey Nakorchevsky; Johannes A Hewel; Daniel Campbell; Elizabeth H Robison; Lin Wang; Wen Lin; Lillian Gaber; Kim Solez; Hamid Shidban; Robert Mendez; Randolph L Schaffer; Jonathan S Fisher; Stuart M Flechner; Steven R Head; Steve Horvath; John R Yates; Christopher L Marsh; Daniel R Salomon
Biomarkers for early and late stage chronic allograft nephropathy by proteogenomic profiling of peripheral blood.
PloS one 2009;4(7):e6212.
2009: Bingwen Lu; Tao Xu; Sung Kyu Park; John R Yates
Shotgun protein identification and quantification by mass spectrometry.
Methods in molecular biology (Clifton, N.J.) 2009;564():261-88.
2009: John R Yates; Cristian I Ruse; Aleksey Nakorchevsky
Proteomics by mass spectrometry: approaches, advances, and applications.
Annual review of biomedical engineering 2009;11():49-79.
2009: Paulo C Carvalho; Juliana S G Fischer; Emily I Chen; Gilberto B Domont; Maria G C Carvalho; Wim Degrave; John R Yates; Valmir C Barbosa
GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.
Proteome science 2009;7():6.
2009: Tao Xu; Catherine C L Wong; Anna Kashina; John R Yates
Identification of N-terminally arginylated proteins and peptides by mass spectrometry.
Nature protocols 2009;4(3):325-32.
2008: Hui Zhu; Judith A Coppinger; Chang-Young Jang; John R Yates; Guowei Fang
FAM29A promotes microtubule amplification via recruitment of the NEDD1-gamma-tubulin complex to the mitotic spindle.
The Journal of cell biology 2008;183(5):835-48.
2008: Reena Rai; Catherine C L Wong; Tao Xu; N Adrian Leu; Dawei W Dong; Caiying Guo; K John McLaughlin; John R Yates; Anna Kashina
Arginyltransferase regulates alpha cardiac actin function, myofibril formation and contractility during heart development.
Development (Cambridge, England) 2008;135(23):3881-9.
2008: Matthias D Kaeser; Aaron S. Aslanian; Meng-Qiu Dong; John R Yates; Beverly M Emerson
BRD7, a novel PBAF-specific SWI/SNF subunit, is required for target gene activation and repression in embryonic stem cells.
The Journal of biological chemistry 2008;283(47):32254-63.
2008: Lujian Liao; Daniel B McClatchy; Sung Kyu Park; Tao Xu; bingwen lu; John R Yates
Quantitative analysis of brain nuclear phosphoproteins identifies developmentally regulated phosphorylation events.
Journal of proteome research 2008;7(11):4743-55.
2008: Lujian Liao; Sung Kyu Park; Tao Xu; Peter W Vanderklish; John R Yates
Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(40):15281-6.
2008: bingwen lu; Daniel B McClatchy; Jin Young Kim; John R Yates
Strategies for shotgun identification of integral membrane proteins by tandem mass spectrometry.
Proteomics 2008;8(19):3947-55.
2008: Xuemei Han; Aaron S. Aslanian; John R Yates
Mass spectrometry for proteomics.
Current opinion in chemical biology 2008;12(5):483-90.
2008: Amy L Creekmore; Kjirsten A Walt; Jennifer R Schultz-Norton; Yvonne S Ziegler; Ian X McLeod; John R Yates; Carol Curtis
The role of retinoblastoma-associated proteins 46 and 48 in estrogen receptor alpha mediated gene expression.
Molecular and cellular endocrinology 2008;291(1-2):79-86.
2008: Wei-meng Zhao; Judith A Coppinger; Akiko Seki; Xiao-Li Cheng; John R Yates; Guowei Fang
RCS1, a substrate of APC/C, controls the metaphase to anaphase transition.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(36):13415-20.
2008: Ting-Wei Mu; Derrick Sek Tong Ong; Ya-Juan Wang; William E Balch; John R Yates; Laura Segatori; Jeffery W Kelly
Chemical and biological approaches synergize to ameliorate protein-folding diseases.
Cell 2008;134(5):769-81.
2008: James J Moresco; Meng-Qiu Dong; John R Yates
Quantitative mass spectrometry as a tool for nutritional proteomics.
The American journal of clinical nutrition 2008;88(3):597-604.
2008: Reto Gassmann; Anthony Essex; Jia-Sheng Hu; Maddox Paul; Fumio Motegi; Asako Sugimoto; Sean M O'Rourke; Bruce Bowerman; Ian X McLeod; John R Yates; Karen Oegema; Iain M Cheeseman; Arshad Desai
A new mechanism controlling kinetochore-microtubule interactions revealed by comparison of two dynein-targeting components: SPDL-1 and the Rod/Zwilch/Zw10 complex.
Genes & development 2008;22(17):2385-99.
2008: R A M de Bruin; Tatyana I Kalashnikova; Aaron S. Aslanian; James Wohlschlegel; Charly Chahwan; John R Yates; Paul Russell; Curt Wittenberg
DNA replication checkpoint promotes G1-S transcription by inactivating the MBF repressor Nrm1.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(32):11230-5.
2008: bingwen lu; Cristian I Ruse; John R Yates
Colander: a probability-based support vector machine algorithm for automatic screening for CID spectra of phosphopeptides prior to database search.
Journal of proteome research 2008;7(8):3628-34.
2008: Akiko Seki; Judith A Coppinger; Chang-Young Jang; John R Yates; Guowei Fang
Bora and the kinase Aurora a cooperatively activate the kinase Plk1 and control mitotic entry.
Science (New York, N.Y.) 2008;320(5883):1655-8.
2008: Jennifer Scorah; Meng-Qiu Dong; John R Yates; Mary Scott; David Gillespie; Clare H McGowan
A conserved proliferating cell nuclear antigen-interacting protein sequence in Chk1 is required for checkpoint function.
The Journal of biological chemistry 2008;283(25):17250-9.
2008: SongXiao Xu; Catherine C L Wong; Edith H Y Tong; Stephen S M Chung; John R Yates; YiBing Yin; Ben C B Ko
Phosphorylation by casein kinase 1 regulates tonicity-induced osmotic response element-binding protein/tonicity enhancer-binding protein nucleocytoplasmic trafficking.
The Journal of biological chemistry 2008;283(25):17624-34.
2008: Kailash P Patra; Jeff R Johnson; Greg T Cantin; John R Yates; Joseph M Vinetz
Proteomic analysis of zygote and ookinete stages of the avian malaria parasite Plasmodium gallinaceum delineates the homologous proteomes of the lethal human malaria parasite Plasmodium falciparum.
Proteomics 2008;8(12):2492-9.
2008: Benjamin W Neuman; Jeremiah S Joseph; Kumar Singh Saikatendu; Pedro Serrano; Amarnath Chatterjee; Margaret A Johnson; Lujian Liao; Joseph P Klaus; John R Yates; Kurt Wüthrich; Raymond C Stevens; Michael J Buchmeier; Peter Kuhn
Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3.
Journal of virology 2008;82(11):5279-94.
2008: Cristian I Ruse; Daniel B McClatchy; bingwen lu; Daniel Cociorva; Akira Motoyama; Sung Kyu Park; John R Yates
Motif-specific sampling of phosphoproteomes.
Journal of proteome research 2008;7(5):2140-50.
2008: Abhi K Rao; Yvonne S Ziegler; Ian X McLeod; John R Yates; Carol Curtis
Effects of Cu/Zn superoxide dismutase on estrogen responsiveness and oxidative stress in human breast cancer cells.
Molecular endocrinology (Baltimore, Md.) 2008;22(5):1113-24.
2008: Chang-Young Jang; Jim Wong; Judith A Coppinger; Akiko Seki; John R Yates; Guowei Fang
DDA3 recruits microtubule depolymerase Kif2a to spindle poles and controls spindle dynamics and mitotic chromosome movement.
The Journal of cell biology 2008;181(2):255-67.
2008: J-H Zhu; R Chen; W Yi; Greg T Cantin; Colleen Fearns; Y Yang; John R Yates; Jiing-Dwan Lee
Protein tyrosine phosphatase PTPN13 negatively regulates Her2/ErbB2 malignant signaling.
Oncogene 2008;27(18):2525-31.
2008: Dawn M Clifford; Benjamin A. Wolfe; Rachel H Roberts-Galbraith; W Hayes McDonald; John R Yates; Kathleen L Gould
The Clp1/Cdc14 phosphatase contributes to the robustness of cytokinesis by association with anillin-related Mid1.
The Journal of cell biology 2008;181(1):79-88.
2008: Akiko Seki; Judith A Coppinger; Haining Du; Chang-Young Jang; John R Yates; Guowei Fang
Plk1- and beta-TrCP-dependent degradation of Bora controls mitotic progression.
The Journal of cell biology 2008;181(1):65-78.
2008: Sung Kyu Park; John D Venable; Tao Xu; John R Yates
A quantitative analysis software tool for mass spectrometry-based proteomics.
Nature methods 2008;5(4):319-22.
2008: bingwen lu; Akira Motoyama; Cristian I Ruse; John D Venable; John R Yates
Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data.
Analytical chemistry 2008;80(6):2018-25.
2008: Mabelle Ashe; Robertus A M de Bruin; Tatyana Kalashnikova; W Hayes McDonald; John R Yates; Curt Wittenberg
The SBF- and MBF-associated protein Msa1 is required for proper timing of G1-specific transcription in Saccharomyces cerevisiae.
The Journal of biological chemistry 2008;283(10):6040-9.
2008: Greg T Cantin; Wei Yi; bingwen lu; Sung Kyu Park; Tao Xu; Jiing-Dwan Lee; John R Yates
Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.
Journal of proteome research 2008;7(3):1346-51.
2008: Daniel B McClatchy; John R Yates
Stable Isotope Labeling of Mammals (SILAM).
CSH protocols 2008;2008():pdb.prot4940.
2008: Jennifer R Schultz-Norton; Yvonne S Ziegler; Varsha S Likhite; John R Yates; Carol Curtis
Isolation of novel coregulatory protein networks associated with DNA-bound estrogen receptor alpha.
BMC molecular biology 2008;9():97.
2008: Paulo C Carvalho; Juliana S G Fischer; Emily I Chen; John R Yates; Valmir C Barbosa
PatternLab for proteomics: a tool for differential shotgun proteomics.
BMC bioinformatics 2008;9():316.
2007: Benjamin F Cravatt; Gabriel M Simon; John R Yates
The biological impact of mass-spectrometry-based proteomics.
Nature 2007;450(7172):991-1000.
2007: Liang Zhang; Lei Ding; Tom H Cheung; Meng-Qiu Dong; Jun Chen; Aileen K Sewell; Xuedong Liu; John R Yates; Min Han
Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2.
Molecular cell 2007;28(4):598-613.
2007: Claire M Delahunty; John R Yates
MudPIT: multidimensional protein identification technology.
BioTechniques 2007;43(5):563, 565, 567 passim.
2007: Angela J Ahrendt; Sandra L Tollaksen; Carl Lindberg; Wenhong Zhu; John R Yates; Kelly P Nevin; György Babnigg; Derek R Lovley; Carol S Giometti
Steady state protein levels in Geobacter metallireducens grown with iron (III) citrate or nitrate as terminal electron acceptor.
Proteomics 2007;7(22):4148-57.
2007: Carol D Curtis; Varsha S Likhite; Ian X McLeod; John R Yates; Carol Curtis
Interaction of the tumor metastasis suppressor nonmetastatic protein 23 homologue H1 and estrogen receptor alpha alters estrogen-responsive gene expression.
Cancer research 2007;67(21):10600-7.
2007: Saad El Marzouk; Jennifer R Schultz-Norton; Varsha S Likhite; Ian X McLeod; John R Yates; Carol Curtis
Rho GDP dissociation inhibitor alpha interacts with estrogen receptor alpha and influences estrogen responsiveness.
Journal of molecular endocrinology 2007;39(4):249-59.
2007: Catherine C L Wong; Tao Xu; Reena Rai; Aaron O Bailey; John R Yates; Yuri I Wolf; Henry Zebroski; Anna Kashina
Global analysis of posttranslational protein arginylation.
PLoS biology 2007;5(10):e258.
2007: Sascha Rexroth; Catherine C L Wong; Jessica H Park; John R Yates; Bridgette A Barry
An activated glutamate residue identified in photosystem II at the interface between the manganese-stabilizing subunit and the D2 polypeptide.
The Journal of biological chemistry 2007;282(38):27802-9.
2007: Chandra L Kilburn; Chad Pearson; Edwin Romijn; Janet B Meehl; Thomas H Giddings; Brady P Culver; John R Yates; Mark Winey
New Tetrahymena basal body protein components identify basal body domain structure.
The Journal of cell biology 2007;178(6):905-12.
2007: Emily I Chen; John R Yates
Cancer proteomics by quantitative shotgun proteomics.
Molecular oncology 2007;1(2):144-59.
2007: Daniel B McClatchy; Lujian Liao; Sung Kyu Park; John D Venable; John R Yates
Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development.
Genome research 2007;17(9):1378-88.
2007: Aaron O Bailey; Timothy M Miller; Meng-Qiu Dong; Christine Vande Velde; Don W Cleveland; John R Yates
RCADiA: simple automation platform for comparative multidimensional protein identification technology.
Analytical chemistry 2007;79(16):6410-8.
2007: Meng-Qiu Dong; John D Venable; Nora Au; Tao Xu; Sung Kyu Park; Daniel Cociorva; Jeffrey R Johnson; Andrew Dillin; John R Yates
Quantitative mass spectrometry identifies insulin signaling targets in C. elegans.
Science (New York, N.Y.) 2007;317(5838):660-3.
2007: Christopher Taylor; Norman W Paton; Kathryn S Lilley; Pierre-Alain Binz; Randall K Julian; Andrew R Jones; Weimin Zhu; Rolf Apweiler; Ruedi Aebersold; Eric Deutsch; Michael J Dunn; albert heck; Alexander Leitner; Marcus Macht; Matthias Mann; Lennart Martens; Thomas A Neubert; Scott D Patterson; Peipei Ping; Sean L Seymour; Puneet Souda; Akira Tsugita; Joel Vandekerckhove; Thomas M Vondriska; Julian P Whitelegge; Marc R Wilkins; Ioannnis Xenarios; John R Yates; Henning Hermjakob
The minimum information about a proteomics experiment (MIAPE).
Nature biotechnology 2007;25(8):887-93.
2007: Kunhong Xiao; Daniel B McClatchy; arun shukla; Yang Zhao; Minyong Chen; Sudha K Shenoy; John R Yates; Robert J Lefkowitz
Functional specialization of beta-arrestin interactions revealed by proteomic analysis.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(29):12011-6.
2007: Peter Jung; Berlinda Verdoodt; Aaron Bailey; John R Yates; Antje Menssen; Heiko Hermeking
Induction of cullin 7 by DNA damage attenuates p53 function.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(27):11388-93.
2007: Emily I Chen; Daniel Cociorva; Jeremy L Norris; John R Yates
Optimization of mass spectrometry-compatible surfactants for shotgun proteomics.
Journal of proteome research 2007;6(7):2529-38.
2007: Jennifer R Schultz-Norton; Kjirsten A Walt; Yvonne S Ziegler; Ian X McLeod; John R Yates; Lori T Raetzman; Carol Curtis
The deoxyribonucleic acid repair protein flap endonuclease-1 modulates estrogen-responsive gene expression.
Molecular endocrinology (Baltimore, Md.) 2007;21(7):1569-80.
2007: Greg T Cantin; Teresa R Shock; Sung Kyu Park; Hiten D Madhani; John R Yates
Optimizing TiO2-based phosphopeptide enrichment for automated multidimensional liquid chromatography coupled to tandem mass spectrometry.
Analytical chemistry 2007;79(12):4666-73.
2007: Andrey Efimov; Alexey Kharitonov; Nadia Efimova; Jadranka Loncarek; Paul M Miller; Natalia Andreyeva; Paul Gleeson; Niels Galjart; Ana R R Maia; Ian X McLeod; John R Yates; Helder Maiato; Alexey Khodjakov; Anna Akhmanova; Irina Kaverina
Asymmetric CLASP-dependent nucleation of noncentrosomal microtubules at the trans-Golgi network.
Developmental cell 2007;12(6):917-30.
2007: Bryan M O'Neill; Shawn J Szyjka; Ewa T Lis; Aaron O Bailey; John R Yates; Oscar M Aparicio; Floyd E Romesberg
Pph3-Psy2 is a phosphatase complex required for Rad53 dephosphorylation and replication fork restart during recovery from DNA damage.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(22):9290-5.
2007: Akira Motoyama; Tao Xu; Cristian I Ruse; James Wohlschlegel; John R Yates
Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides.
Analytical chemistry 2007;79(10):3623-34.
2007: Daniel B McClatchy; Meng-Qiu Dong; Christine C Wu; John D Venable; John R Yates
15N metabolic labeling of mammalian tissue with slow protein turnover.
Journal of proteome research 2007;6(5):2005-10.
2007: John D Venable; James Wohlschlegel; Daniel B McClatchy; Sung Kyu Park; John R Yates
Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer.
Analytical chemistry 2007;79(8):3056-64.
2007: Lujian Liao; Julie Pilotte; Tao Xu; Catherine C L Wong; Gerald M Edelman; Peter W Vanderklish; John R Yates
BDNF induces widespread changes in synaptic protein content and up-regulates components of the translation machinery: an analysis using high-throughput proteomics.
Journal of proteome research 2007;6(3):1059-71.
2007: Emily I Chen; Johannes Hewel; Joseph S Krueger; Claire Tiraby; Martin R Weber; Anastasia Kralli; Katja Becker; John R Yates; Brunhilde Felding-Habermann
Adaptation of energy metabolism in breast cancer brain metastases.
Cancer research 2007;67(4):1472-86.
2007: Peiqing Sun; Naoto Yoshizuka; Liguo New; Bettina Anita Moser; Yilei Li; Rong Liao; Changchuan Xie; Jianming Chen; Qingdong Deng; Maria Yamout; Meng-Qiu Dong; Costas G Frangou; John R Yates; Peter Wright; Jiahuai Han
PRAK is essential for ras-induced senescence and tumor suppression.
Cell 2007;128(2):295-308.
2007: Heike B Koch; Ru Zhang; Berlinda Verdoodt; Aaron Bailey; Chang-Dong Zhang; John R Yates; Antje Menssen; Heiko Hermeking
Large-scale identification of c-MYC-associated proteins using a combined TAP/MudPIT approach.
Cell cycle (Georgetown, Tex.) 2007;6(2):205-17.
2007: Daniel Cociorva; David L Tabb; John R Yates
Validation of tandem mass spectrometry database search results using DTASelect.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2007;Chapter 13():Unit 13.4.
2007: Anjon Audhya; Ian X McLeod; John R Yates; Karen Oegema
MVB-12, a fourth subunit of metazoan ESCRT-I, functions in receptor downregulation.
PloS one 2007;2(9):e956.
2007: Jennifer R Schultz-Norton; Vivian A Gabisi; Yvonne S Ziegler; Ian X McLeod; John R Yates; Carol Curtis
Interaction of estrogen receptor alpha with proliferating cell nuclear antigen.
Nucleic acids research 2007;35(15):5028-38.
2006: Sharsti Sandall; Fedor Severin; Ian X McLeod; John R Yates; Karen Oegema; Anthony Hyman; Arshad Desai
A Bir1-Sli15 complex connects centromeres to microtubules and is required to sense kinetochore tension.
Cell 2006;127(6):1179-91.
2006: tal varsano; Meng-Qiu Dong; Ingrid R Niesman; Hyacynth Gacula; Xiaojing Lou; Tianlin Ma; Joseph R Testa; John R Yates; Marilyn G Farquhar
GIPC is recruited by APPL to peripheral TrkA endosomes and regulates TrkA trafficking and signaling.
Molecular and cellular biology 2006;26(23):8942-52.
2006: Xiaodong Robert Wang; John D Venable; Paul LaPointe; Darren M Hutt; Atanas Koulov; Judith A Coppinger; Cemal Gurkan; Wendy Kellner; Jeanne Matteson; Helen Plutner; John R Riordan; Jeffery W Kelly; John R Yates; William E Balch
Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis.
Cell 2006;127(4):803-15.
2006: Eli Chapman; George W Farr; Renata Usaite; Krystyna J Furtak; Wayne A Fenton; Tapan K Chaudhuri; Elise R Hondorp; Rowena G Matthews; Sharon Wolf; John R Yates; Marc Pypaert; Arthur L Horwich
Global aggregation of newly translated proteins in an Escherichia coli strain deficient of the chaperonin GroEL.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(43):15800-5.
2006: Grazia D Raffa; James Wohlschlegel; John R Yates; Michael N Boddy
SUMO-binding motifs mediate the Rad60-dependent response to replicative stress and self-association.
The Journal of biological chemistry 2006;281(38):27973-81.
2006: Benjamin A. Wolfe; W Hayes McDonald; John R Yates; Kathleen L Gould
Phospho-regulation of the Cdc14/Clp1 phosphatase delays late mitotic events in S. pombe.
Developmental cell 2006;11(3):423-30.
2006: Joshua A Rosenberg; Gregory C Tomlin; W Hayes McDonald; Brian E Snydsman; Eric G D Muller; John R Yates; Kathleen L Gould
Ppc89 links multiple proteins, including the septation initiation network, to the core of the fission yeast spindle-pole body.
Molecular biology of the cell 2006;17(9):3793-805.
2006: Jennifer R Schultz-Norton; W Hayes McDonald; John R Yates; Carol Curtis
Protein disulfide isomerase serves as a molecular chaperone to maintain estrogen receptor alpha structure and function.
Molecular endocrinology (Baltimore, Md.) 2006;20(9):1982-95.
2006: Michelle M Shimogawa; Beth Graczyk; Melissa K Gardner; Susan E Francis; Erin A White; Michael Ess; Jeffrey N Molk; Cristian Ruse; Sherry Niessen; John R Yates; Eric G D Muller; Kerry Bloom; David J Odde; Trisha Davis
Mps1 phosphorylation of Dam1 couples kinetochores to microtubule plus ends at metaphase.
Current biology : CB 2006;16(15):1489-501.
2006: Akira Motoyama; John D Venable; Cristian I Ruse; John R Yates
Automated ultra-high-pressure multidimensional protein identification technology (UHP-MudPIT) for improved peptide identification of proteomic samples.
Analytical chemistry 2006;78(14):5109-18.
2006: Marina Karakozova; Marina Kozak; Catherine C L Wong; Aaron O Bailey; John R Yates; Alex Mogilner; Henry Zebroski; Anna Kashina
Arginylation of beta-actin regulates actin cytoskeleton and cell motility.
Science (New York, N.Y.) 2006;313(5784):192-6.
2006: Toshiaki Harashima; Scott Anderson; John R Yates; Joseph Heitman
The kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with the yeast RasGAP neurofibromin homologs Ira1 and Ira2.
Molecular cell 2006;22(6):819-30.
2006: Sara K Olson; Joseph Bishop; John R Yates; Karen Oegema; Jeffrey D Esko
Identification of novel chondroitin proteoglycans in Caenorhabditis elegans: embryonic cell division depends on CPG-1 and CPG-2.
The Journal of cell biology 2006;173(6):985-94.
2006: Victoria Martín; Charly Chahwan; Hui Gao; Veronique Blais; James Wohlschlegel; John R Yates; Clare H McGowan; Paul Russell
Sws1 is a conserved regulator of homologous recombination in eukaryotic cells.
The EMBO journal 2006;25(11):2564-74.
2006: Masahiro Okada; Iain M Cheeseman; Tetsuya Hori; Katsuya Okawa; Ian X McLeod; John R Yates; Arshad Desai; Tatsuo Fukagawa
The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres.
Nature cell biology 2006;8(5):446-57.
2006: Daniel R. Foltz; Lars E T Jansen; Ben E Black; Aaron O Bailey; John R Yates; Don W Cleveland
The human CENP-A centromeric nucleosome-associated complex.
Nature cell biology 2006;8(5):458-69.
2006: James Wohlschlegel; Erica S Johnson; Steven I Reed; John R Yates
Improved identification of SUMO attachment sites using C-terminal SUMO mutants and tailored protease digestion strategies.
Journal of proteome research 2006;5(4):761-70.
2006: John D Venable; Tao Xu; Daniel Cociorva; John R Yates
Cross-correlation algorithm for calculation of peptide molecular weight from tandem mass spectra.
Analytical chemistry 2006;78(6):1921-9.
2006: Stephanie Pebernard; James Wohlschlegel; W Hayes McDonald; John R Yates; Michael N Boddy
The Nse5-Nse6 dimer mediates DNA repair roles of the Smc5-Smc6 complex.
Molecular and cellular biology 2006;26(5):1617-30.
2006: Victoria Martín; Miguel A Rodríguez-Gabriel; W Hayes McDonald; Stephen Watt; John R Yates; Jürg Bähler; Miguel Rodriguez-Gabriel
Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress.
Molecular biology of the cell 2006;17(3):1176-83.
2006: Per Olov Widlund; John S Lyssand; Scott Anderson; Sherry Niessen; John R Yates; Trisha Davis
Phosphorylation of the chromosomal passenger protein Bir1 is required for localization of Ndc10 to the spindle during anaphase and full spindle elongation.
Molecular biology of the cell 2006;17(3):1065-74.
2006: Sebastián Guelman; Tamaki Suganuma; Laurence Florens; Selene K Swanson; Cheri L Kiesecker; Thomas Kusch; Scott Anderson; John R Yates; Michael Washburn; Susan M Abmayr; Jerry L Workman
Host cell factor and an uncharacterized SANT domain protein are stable components of ATAC, a novel dAda2A/dGcn5-containing histone acetyltransferase complex in Drosophila.
Molecular and cellular biology 2006;26(3):871-82.
2006: John R Yates; Daniel Cociorva; Lujian Liao; Vlad Zabrouskov
Performance of a linear ion trap-Orbitrap hybrid for peptide analysis.
Analytical chemistry 2006;78(2):493-500.
2006: Thaiya Krishnamurthy; Johannes Hewel; Neil J Bonzagni; Jason Dabbs; Robert L Bull; John R Yates
Simultaneous identification and verification of Bacillus anthracis.
Rapid communications in mass spectrometry : RCM 2006;20(13):2053-6.
2006: Emily I Chen; John R Yates
Maspin and tumor metastasis.
IUBMB life 2006;58(1):25-9.
2006: Greg T Cantin; John D Venable; Daniel Cociorva; John R Yates
Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway.
Journal of proteome research 2006;5(1):127-34.
2006: Rovshan G Sadygov; James Wohlschlegel; Sung Kyu Park; Tao Xu; John R Yates
Central limit theorem as an approximation for intensity-based scoring function.
Analytical chemistry 2006;78(1):89-95.
2006: Tripti Khare; Abraham Esteve-Núñez; Kelly P Nevin; Wenhong Zhu; John R Yates; Derek R Lovley; Carol S Giometti
Differential protein expression in the metal-reducing bacterium Geobacter sulfurreducens strain PCA grown with fumarate or ferric citrate.
Proteomics 2006;6(2):632-40.
2006: Emily I Chen; Johannes Hewel; Brunhilde Felding-Habermann; John R Yates
Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT).
Molecular & cellular proteomics : MCP 2006;5(1):53-6.
2006: Stephanie Cherqui; Sunil M Kurian; Olivier Schussler; Johannes A Hewel; John R Yates; Daniel R Salomon
Isolation and angiogenesis by endothelial progenitors in the fetal liver.
Stem cells (Dayton, Ohio) 2006;24(1):44-54.
2005: Michael J MacCoss; Christine C Wu; Dwight Matthews; John R Yates
Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides.
Analytical chemistry 2005;77(23):7646-53.
2005: Wenhong Zhu; John D Venable; Carol S Giometti; Tripti Khare; Sandra L Tollaksen; Angela J Ahrendt; John R Yates
Large-scale muLC-MS/MS for silver- and Coomassie blue-stained polyacrylamide gels.
Electrophoresis 2005;26(23):4495-507.
2005: Anjon Audhya; Francie Hyndman; Ian X McLeod; Amy Shaub Maddox; John R Yates; Arshad Desai; Karen Oegema
A complex containing the Sm protein CAR-1 and the RNA helicase CGH-1 is required for embryonic cytokinesis in Caenorhabditis elegans.
The Journal of cell biology 2005;171(2):267-79.
2005: Susan Lee; Frank I Comer; Atsuo Sasaki; Ian X McLeod; Yung Duong; Koichi Okumura; John R Yates; Carole A Parent; Richard A Firtel
TOR complex 2 integrates cell movement during chemotaxis and signal relay in Dictyostelium.
Molecular biology of the cell 2005;16(10):4572-83.
2005: John R Yates; Annalyn Gilchrist; Kathryn E Howell; John J M Bergeron
Proteomics of organelles and large cellular structures.
Nature reviews. Molecular cell biology 2005;6(9):702-14.
2005: Nadim Jessani; Sherry Niessen; Binqing Q Wei; Monica Nicolau; Mark Humphrey; Youngran Ji; Wonshik Han; Dong-Young Noh; John R Yates; Stefanie S Jeffrey; Benjamin F Cravatt
A streamlined platform for high-content functional proteomics of primary human specimens.
Nature methods 2005;2(9):691-7.
2005: Emily I Chen; Laurence Florens; Fumiko T Axelrod; Edward Monosov; Carlos F Barbas; John R Yates; Brunhilde Felding-Habermann; Jeffrey W Smith
Maspin alters the carcinoma proteome.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2005;19(9):1123-4.
2005: Lani C Keller; Edwin Romijn; Ivan Zamora; John R Yates; wallace marshall
Proteomic analysis of isolated chlamydomonas centrioles reveals orthologs of ciliary-disease genes.
Current biology : CB 2005;15(12):1090-8.
2005: Stacey J McMahon; Marilyn G Pray-Grant; David Schieltz; John R Yates; Patrick A Grant
Polyglutamine-expanded spinocerebellar ataxia-7 protein disrupts normal SAGA and SLIK histone acetyltransferase activity.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(24):8478-82.
2005: Anne Benzinger; Nemone Muster; Heike B Koch; John R Yates; Heiko Hermeking
Targeted proteomic analysis of 14-3-3 sigma, a p53 effector commonly silenced in cancer.
Molecular & cellular proteomics : MCP 2005;4(6):785-95.
2005: Iain M Cheeseman; Ian MacLeod; John R Yates; Karen Oegema; Arshad Desai
The CENP-F-like proteins HCP-1 and HCP-2 target CLASP to kinetochores to mediate chromosome segregation.
Current biology : CB 2005;15(8):771-7.
2005: Robert H Carnahan; Anna Feoktistova; Liping Ren; Sherry Niessen; John R Yates; Kathleen L Gould
Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex.
Eukaryotic cell 2005;4(3):577-87.
2005: Claire Delahunty; John R Yates
Protein identification using 2D-LC-MS/MS.
Methods (San Diego, Calif.) 2005;35(3):248-55.
2005: Marilyn G Pray-Grant; Jeremy A Daniel; David Schieltz; John R Yates; Patrick A Grant
Chd1 chromodomain links histone H3 methylation with SAGA- and SLIK-dependent acetylation.
Nature 2005;433(7024):434-8.
2005: Neil Hall; Marianna Karras; J Dale Raine; Jane M Carlton; Taco W A Kooij; Matthew Berriman; Laurence Florens; Christoph S Janssen; Arnab Pain; George Christophides; Keith James; Kim Rutherford; Barbara Harris; David Harris; Carol Churcher; Michael A Quail; Doug Ormond; Jon Doggett; Holly Trueman; Jacqui Mendoza; Shelby L Bidwell; Marie-Adele Rajandream; Daniel J Carucci; John R Yates; Fotis C Kafatos; Chris J Janse; Bart Barrell; C Michael R Turner; Andrew P Waters; Robert E Sinden
A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.
Science (New York, N.Y.) 2005;307(5706):82-6.
2005: Eric C Schirmer; Laurence Florens; Tinglu Guan; John R Yates; Larry Gerace
Identification of novel integral membrane proteins of the nuclear envelope with potential disease links using subtractive proteomics.
Novartis Foundation symposium 2005;264():63-76; discussion 76-80, 227-30.
2004: Marie Z Bao; Monica A Schwartz; Greg T Cantin; John R Yates; Hiten D Madhani
Pheromone-dependent destruction of the Tec1 transcription factor is required for MAP kinase signaling specificity in yeast.
Cell 2004;119(7):991-1000.
2004: Julie L Kadrmas; Mark A. Smith; Kathleen A Clark; Stephen M Pronovost; Nemone Muster; John R Yates; Mary C Beckerle
The integrin effector PINCH regulates JNK activity and epithelial migration in concert with Ras suppressor 1.
The Journal of cell biology 2004;167(6):1019-24.
2004: Thomas Kusch; Laurence Florens; W Hayes Macdonald; Selene K Swanson; Robert L Glaser; John R Yates; Susan M Abmayr; Michael Washburn; Jerry L Workman
Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions.
Science (New York, N.Y.) 2004;306(5704):2084-7.
2004: Rovshan G Sadygov; Daniel Cociorva; John R Yates
Large-scale database searching using tandem mass spectra: looking up the answer in the back of the book.
Nature methods 2004;1(3):195-202.
2004: Karine G Le Roch; Jeffrey R Johnson; Laurence Florens; Yingyao Zhou; Andrey Santrosyan; Munira Grainger; Shi Fang Yan; Kim C Williamson; Anthony A Holder; Daniel J Carucci; John R Yates; Elizabeth A Winzeler
Global analysis of transcript and protein levels across the Plasmodium falciparum life cycle.
Genome research 2004;14(11):2308-18.
2004: Stephanie Pebernard; W Hayes McDonald; Yelena Pavlova; John R Yates; Michael N Boddy
Nse1, Nse2, and a novel subunit of the Smc5-Smc6 complex, Nse3, play a crucial role in meiosis.
Molecular biology of the cell 2004;15(11):4866-76.
2004: Margaret A Loven; Roger E Davis; Carol D Curtis; Nemone Muster; John R Yates; Carol Curtis
A novel estrogen receptor alpha-associated protein alters receptor-deoxyribonucleic acid interactions and represses receptor-mediated transcription.
Molecular endocrinology (Baltimore, Md.) 2004;18(11):2649-59.
2004: James Wohlschlegel; Erica S Johnson; Steven I Reed; John R Yates
Global analysis of protein sumoylation in Saccharomyces cerevisiae.
The Journal of biological chemistry 2004;279(44):45662-8.
2004: Greg T Cantin; John R Yates
Strategies for shotgun identification of post-translational modifications by mass spectrometry.
Journal of chromatography. A 2004;1053(1-2):7-14.
2004: John D Venable; Meng-Qiu Dong; James Wohlschlegel; Andrew Dillin; John R Yates
Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra.
Nature methods 2004;1(1):39-45.
2004: Holly Trueman; J Dale Raine; Laurence Florens; Johannes T Dessens; Jacqui Mendoza; Jeffrey Johnson; Cecilia C Waller; Isabelle Delrieu; Anthony A Holders; Jean Langhorne; Daniel J Carucci; John R Yates; Robert E Sinden
Functional characterization of an LCCL-lectin domain containing protein family in Plasmodium berghei.
The Journal of parasitology 2004;90(5):1062-71.
2004: Eishi Noguchi; Chiaki Noguchi; W Hayes McDonald; John R Yates; Paul Russell
Swi1 and Swi3 are components of a replication fork protection complex in fission yeast.
Molecular and cellular biology 2004;24(19):8342-55.
2004: Nadim Jessani; Mark Humphrey; W Hayes McDonald; Sherry Niessen; Kim Masuda; Beena Gangadharan; John R Yates; Barbara M Mueller; Benjamin F Cravatt
Carcinoma and stromal enzyme activity profiles associated with breast tumor growth in vivo.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(38):13756-61.
2004: Iain M Cheeseman; Sherry Niessen; Scott Anderson; Francie Hyndman; John R Yates; Karen Oegema; Arshad Desai
A conserved protein network controls assembly of the outer kinetochore and its ability to sustain tension.
Genes & development 2004;18(18):2255-68.
2004: Tobili Y Sam-Yellowe; Laurence Florens; Tongmin Wang; J Dale Raine; Daniel J Carucci; Robert Sinden; John R Yates
Proteome analysis of rhoptry-enriched fractions isolated from Plasmodium merozoites.
Journal of proteome research 2004;3(5):995-1001.
2004: Christine C Wu; Michael J MacCoss; Kathryn E Howell; Dwight Matthews; John R Yates
Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis.
Analytical chemistry 2004;76(17):4951-9.
2004: Hongbin Liu; Rovshan G Sadygov; John R Yates
A model for random sampling and estimation of relative protein abundance in shotgun proteomics.
Analytical chemistry 2004;76(14):4193-201.
2004: John R Yates
Mass spectrometry as an emerging tool for systems biology.
BioTechniques 2004;36(6):917-9.
2004: Tobili Y Sam-Yellowe; Laurence Florens; Jeffrey R Johnson; Tongmin Wang; Judith A Drazba; Karine G Le Roch; Yingyao Zhou; Serge Batalov; Daniel J Carucci; Elizabeth A Winzeler; John R Yates
A Plasmodium gene family encoding Maurer's cleft membrane proteins: structural properties and expression profiling.
Genome research 2004;14(6):1052-9.
2004: Christine C Wu; Michael J MacCoss; Gonzalo Mardones; Claire Finnigan; Soren Mogelsvang; John R Yates; Kathryn E Howell
Organellar proteomics reveals Golgi arginine dimethylation.
Molecular biology of the cell 2004;15(6):2907-19.
2004: John D Venable; John R Yates
Impact of ion trap tandem mass spectra variability on the identification of peptides.
Analytical chemistry 2004;76(10):2928-37.
2004: Yi Hsing Lin; Zee-Yong Park; Dayin Lin; Anar A Brahmbhatt; Marie-Christine Rio; John R Yates; Richard L Klemke
Regulation of cell migration and survival by focal adhesion targeting of Lasp-1.
The Journal of cell biology 2004;165(3):421-32.
2004: Laurence Florens; Xia Liu; Yufeng Wang; Shiguang Yang; Owen Schwartz; Michael Peglar; Daniel J Carucci; John R Yates; Yimin Wub
Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes.
Molecular and biochemical parasitology 2004;135(1):1-11.
2004: Wenhong Zhu; Claudia I Reich; Gary J Olsen; Carol S Giometti; John R Yates
Shotgun proteomics of Methanococcus jannaschii and insights into methanogenesis.
Journal of proteome research 2004;3(3):538-48.
2004: Varsha S Likhite; Emily I Cass; Scott D Anderson; John R Yates; Carol Curtis
Interaction of estrogen receptor alpha with 3-methyladenine DNA glycosylase modulates transcription and DNA repair.
The Journal of biological chemistry 2004;279(16):16875-82.
2004: Tapio Kesti; W Hayes McDonald; John R Yates; Curt Wittenberg
Cell cycle-dependent phosphorylation of the DNA polymerase epsilon subunit, Dpb2, by the Cdc28 cyclin-dependent protein kinase.
The Journal of biological chemistry 2004;279(14):14245-55.
2004: Rovshan G Sadygov; Hongbin Liu; John R Yates
Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
Analytical chemistry 2004;76(6):1664-71.
2004: Jeffrey R Johnson; Laurence Florens; Daniel J Carucci; John R Yates
Proteomics in malaria.
Journal of proteome research 2004;3(2):296-306.
2004: David L Tabb; Yingying Huang; Vicki H Wysocki; John R Yates
Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides.
Analytical chemistry 2004;76(5):1243-8.
2004: Johannes Graumann; Leslie A Dunipace; Jae Hong Seol; W Hayes McDonald; John R Yates; Barbara J Wold; Raymond J Deshaies
Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast.
Molecular & cellular proteomics : MCP 2004;3(3):226-37.
2004: Jeremy A Daniel; Michael S Torok; Zu-Wen Sun; David Schieltz; C David Allis; John R Yates; Patrick A Grant
Deubiquitination of histone H2B by a yeast acetyltransferase complex regulates transcription.
The Journal of biological chemistry 2004;279(3):1867-71.
2004: W Hayes McDonald; David L Tabb; Rovshan G Sadygov; Michael J MacCoss; John D Venable; Johannes Graumann; Jeff R Johnson; Daniel Cociorva; John R Yates
MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.
Rapid communications in mass spectrometry : RCM 2004;18(18):2162-8.
2004: John R Yates
Mass spectral analysis in proteomics.
Annual review of biophysics and biomolecular structure 2004;33():297-316.
2004: Stéphane Coulon; Pierre-Henri L Gaillard; Charly Chahwan; W Hayes McDonald; John R Yates; Paul Russell
Slx1-Slx4 are subunits of a structure-specific endonuclease that maintains ribosomal DNA in fission yeast.
Molecular biology of the cell 2004;15(1):71-80.
2003: Michael J MacCoss; Christine C Wu; Hongbin Liu; Rovshan G Sadygov; John R Yates
A correlation algorithm for the automated quantitative analysis of shotgun proteomics data.
Analytical chemistry 2003;75(24):6912-21.
2003: Tony R Hazbun; Lars Malmström; Scott Anderson; Beth J Graczyk; Bethany Fox; Michael Riffle; Bryan A Sundin; J Derringer Aranda; W Hayes McDonald; Chun-Hwei Chiu; Brian E Snydsman; Philip Bradley; Eric G D Muller; Stanley Fields; David Baker; John R Yates; Trisha Davis
Assigning function to yeast proteins by integration of technologies.
Molecular cell 2003;12(6):1353-65.
2003: David L Tabb; Anita Saraf; John R Yates
GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model.
Analytical chemistry 2003;75(23):6415-21.
2003: Miguel A Rodríguez-Gabriel; Gavin Burns; W Hayes McDonald; Victoria Martín; John R Yates; Jürg Bähler; Miguel Rodriguez-Gabriel
RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress.
The EMBO journal 2003;22(23):6256-66.
2003: W Hayes McDonald; Yelena Pavlova; John R Yates; Michael N Boddy
Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex.
The Journal of biological chemistry 2003;278(46):45460-7.
2003: Eric C Schirmer; John R Yates; Larry Gerace
MudPIT: A powerful proteomics tool for discovery.
Discovery medicine 2003;3(18):38-9.
2003: Michael Washburn; Ryan R Ulaszek; John R Yates
Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology.
Analytical chemistry 2003;75(19):5054-61.
2003: Eric C Schirmer; Laurence Florens; Tinglu Guan; John R Yates; Larry Gerace
Nuclear membrane proteins with potential disease links found by subtractive proteomics.
Science (New York, N.Y.) 2003;301(5638):1380-2.
2003: Kenichi Yamaguchi; María Verónica Beligni; Susana Prieto; Paul A Haynes; W Hayes McDonald; John R Yates; Stephen P Mayfield
Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.
The Journal of biological chemistry 2003;278(36):33774-85.
2003: Jingping Zhong; Paul A Haynes; Shiping Zhang; Xinping Yang; Nancy L Andon; Donna Eckert; John R Yates; Xun Wang; Paul Budworth
Development of a system for the study of protein-protein interactions in planta: characterization of a TATA-box binding protein complex in Oryza sativa.
Journal of proteome research 2003;2(5):514-22.
2003: Hanjo Lim; Jimmy Eng; John R Yates; Sandra L Tollaksen; Carol S Giometti; James F Holden; Michael W W Adams; Claudia I Reich; Gary J Olsen; Lara G Hays
Identification of 2D-gel proteins: a comparison of MALDI/TOF peptide mass mapping to mu LC-ESI tandem mass spectrometry.
Journal of the American Society for Mass Spectrometry 2003;14(9):957-70.
2003: Rovshan G Sadygov; John R Yates
A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases.
Analytical chemistry 2003;75(15):3792-8.
2003: Nancy L Andon; Donna Eckert; John R Yates; Paul A Haynes
High-throughput functional affinity purification of mannose binding proteins from Oryza sativa.
Proteomics 2003;3(7):1270-8.
2003: Bret Cooper; Donna Eckert; Nancy L Andon; John R Yates; Paul A Haynes
Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry.
Journal of the American Society for Mass Spectrometry 2003;14(7):736-41.
2003: W Hayes McDonald; John R Yates
Shotgun proteomics: integrating technologies to answer biological questions.
Current opinion in molecular therapeutics 2003;5(3):302-9.
2003: Karl Willert; Jeffrey D Brown; Esther Danenberg; Andrew W Duncan; Irving L Weissman; Tannishtha Reya; John R Yates; Roel Nusse
Wnt proteins are lipid-modified and can act as stem cell growth factors.
Nature 2003;423(6938):448-52.
2003: David L Tabb; Michael J MacCoss; Christine C Wu; Scott D Anderson; John R Yates
Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility.
Analytical chemistry 2003;75(10):2470-7.
2003: Carol S Giometti; Tripti Khare; Sandra L Tollaksen; Alexandre I Tsapin; Wenhong Zhu; John R Yates; Kenneth H Nealson
Analysis of the Shewanella oneidensis proteome by two-dimensional gel electrophoresis under nondenaturing conditions.
Proteomics 2003;3(5):777-85.
2003: Linda Breci; David L Tabb; John R Yates; Vicki H Wysocki
Cleavage N-terminal to proline: analysis of a database of peptide tandem mass spectra.
Analytical chemistry 2003;75(9):1963-71.
2003: Christine C Wu; Michael J MacCoss; Kathryn E Howell; John R Yates
A method for the comprehensive proteomic analysis of membrane proteins.
Nature biotechnology 2003;21(5):532-8.
2003: Dayin Lin; David L Tabb; John R Yates
Large-scale protein identification using mass spectrometry.
Biochimica et biophysica acta 2003;1646(1-2):1-10.
2003: Michael Washburn; Antonius Koller; Guy Oshiro; Ryan R Ulaszek; David Plouffe; Cosmin Deciu; Elizabeth A Winzeler; John R Yates
Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(6):3107-12.
2003: Bing Li; LeAnn Howe; Scott Anderson; John R Yates; Jerry L Workman
The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.
The Journal of biological chemistry 2003;278(11):8897-903.
2003: David L Tabb; Lori L Smith; Linda Breci; Vicki H Wysocki; Dayin Lin; John R Yates
Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptides.
Analytical chemistry 2003;75(5):1155-63.
2003: Christine C Wu; John R Yates
The application of mass spectrometry to membrane proteomics.
Nature biotechnology 2003;21(3):262-7.
2003: Christopher Taylor; Norman W Paton; Kevin L Garwood; Paul D Kirby; David Stead; Zhikang Yin; Eric Deutsch; Laura Selway; Janet Walker; Isabel Riba; shabaz mohammed; Michael J Deery; Julie A Howard; Tom P J Dunkley; Ruedi Aebersold; Douglas B Kell; Kathryn S Lilley; Peter Roepstorff; John R Yates; Andrew Brass; Alistair J P Brown; Phillip Cash; Simon J Gaskell; Simon Hubbard; Stephen G Oliver
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Nature biotechnology 2003;21(3):247-54.
2003: Claire Delahunty; John R Yates
Identification of proteins in complex mixtures using liquid chromatography and mass spectrometry.
Current protocols in cell biology / editorial board, Juan S. Bonifacino ... [et al.] 2003;Chapter 5():Unit 5.6.
2003: Derek L. Lindstrom; Sharon L Squazzo; N Muster; Todd A Burckin; K C Wachter; C A Emigh; J A McCleery; John R Yates; Grant A Hartzog
Dual roles for Spt5 in pre-mRNA processing and transcription elongation revealed by identification of Spt5-associated proteins.
Molecular and cellular biology 2003;23(4):1368-78.
2003: Margaret A Loven; Nemone Muster; John R Yates; Carol Curtis
A novel estrogen receptor alpha-associated protein, template-activating factor Ibeta, inhibits acetylation and transactivation.
Molecular endocrinology (Baltimore, Md.) 2003;17(1):67-78.
2003: David Schieltz; John R Yates
Direct identification of proteins in ultracomplex mixtures. Applications to proteome analysis.
Methods in molecular biology (Clifton, N.J.) 2003;211():235-45.
2002: Thomas C Hunter; Nancy L Andon; Antonius Koller; John R Yates; Paul A Haynes
The functional proteomics toolbox: methods and applications.
Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2002;782(1-2):165-81.
2002: Marilyn G Pray-Grant; David Schieltz; Stacey J McMahon; Jennifer M Wood; Erin L Kennedy; Richard G Cook; Jerry L Workman; John R Yates; Patrick A Grant
The novel SLIK histone acetyltransferase complex functions in the yeast retrograde response pathway.
Molecular and cellular biology 2002;22(24):8774-86.
2002: Michael J MacCoss; Christine C Wu; John R Yates
Probability-based validation of protein identifications using a modified SEQUEST algorithm.
Analytical chemistry 2002;74(21):5593-9.
2002: Kenichi Yamaguchi; Susana Prieto; María Verónica Beligni; Paul A Haynes; W Hayes McDonald; John R Yates; Stephen P Mayfield
Proteomic characterization of the small subunit of Chlamydomonas reinhardtii chloroplast ribosome: identification of a novel S1 domain-containing protein and unusually large orthologs of bacterial S2, S3, and S5.
The Plant cell 2002;14(11):2957-74.
2002: Rati Verma; L Aravind; Robert Oania; W Hayes McDonald; John R Yates; Eugene V Koonin; Raymond J Deshaies
Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome.
Science (New York, N.Y.) 2002;298(5593):611-5.
2002: Laurence Florens; Michael Washburn; J Dale Raine; Robert M Anthony; Munira Grainger; J David Haynes; J Kathleen Moch; Nemone Muster; John B Sacci; David L Tabb; Adam A Witney; Dirk Wolters; Yimin Wu; Malcolm J Gardner; Anthony A Holder; Robert E Sinden; John R Yates; Daniel J Carucci
A proteomic view of the Plasmodium falciparum life cycle.
Nature 2002;419(6906):520-6.
2002: Antonius Koller; Michael Washburn; B Markus Lange; Nancy L Andon; Cosmin Deciu; Paul A Haynes; Lara Hays; David Schieltz; Ryan R Ulaszek; Jing Wei; Dirk Wolters; John R Yates
Proteomic survey of metabolic pathways in rice.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(18):11969-74.
2002: Nancy L Andon; Sarah Hollingworth; Antonius Koller; Andrew J Greenland; John R Yates; Paul A Haynes
Proteomic characterization of wheat amyloplasts using identification of proteins by tandem mass spectrometry.
Proteomics 2002;2(9):1156-68.
2002: Guy Oshiro; Lisa M Wodicka; Michael Washburn; John R Yates; David J Lockhart; Elizabeth A Winzeler
Parallel identification of new genes in Saccharomyces cerevisiae.
Genome research 2002;12(8):1210-20.
2002: LeAnn Howe; Thomas Kusch; Nemone Muster; Ranjana Chaterji; John R Yates; Jerry L Workman
Yng1p modulates the activity of Sas3p as a component of the yeast NuA3 Hhistone acetyltransferase complex.
Molecular and cellular biology 2002;22(14):5047-53.
2002: Michael J MacCoss; W Hayes McDonald; Anita Saraf; Rovshan G Sadygov; Judy M Clark; Joseph J Tasto; Kathleen L Gould; Dirk Wolters; Michael Washburn; Avery Weiss; John I Clark; John R Yates
Shotgun identification of protein modifications from protein complexes and lens tissue.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(12):7900-5.
2002: Rovshan G Sadygov; Jimmy Eng; Eberhard Durr; Anita Saraf; Hayes McDonald; Michael J MacCoss; John R Yates
Code developments to improve the efficiency of automated MS/MS spectra interpretation.
Journal of proteome research 2002;1(3):211-5.
2002: Michael Washburn; Ryan R Ulaszek; Cosmin Deciu; David Schieltz; John R Yates
Analysis of quantitative proteomic data generated via multidimensional protein identification technology.
Analytical chemistry 2002;74(7):1650-7.
2002: Hongbin Liu; Dayin Lin; John R Yates
Multidimensional separations for protein/peptide analysis in the post-genomic era.
BioTechniques 2002;32(4):898, 900, 902 passim.
2002: David L Tabb; W Hayes McDonald; John R Yates
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics.
Journal of proteome research 2002;1(1):21-6.
2002: W Hayes McDonald; John R Yates
Shotgun proteomics and biomarker discovery.
Disease markers 2002;18(2):99-105.
2002: Raymond J Deshaies; Jae Hong Seol; W Hayes McDonald; Gregory A Cope; Svetlana Lyapina; Andrej Shevchenko; Anna Shevchenko; Rati Verma; John R Yates
Charting the protein complexome in yeast by mass spectrometry.
Molecular & cellular proteomics : MCP 2002;1(1):3-10.
2001: Dirk Wolters; Michael Washburn; John R Yates
An automated multidimensional protein identification technology for shotgun proteomics.
Analytical chemistry 2001;73(23):5683-90.
2001: S Osada; A Sutton; Nemone Muster; Christine E Brown; John R Yates; R Sternglanz; Jerry L Workman
The yeast SAS (something about silencing) protein complex contains a MYST-type putative acetyltransferase and functions with chromatin assembly factor ASF1.
Genes & development 2001;15(23):3155-68.
2001: Michael N Boddy; Pierre-Henri L Gaillard; W Hayes McDonald; Paul Shanahan; John R Yates; Paul Russell
Mus81-Eme1 are essential components of a Holliday junction resolvase.
Cell 2001;107(4):537-48.
2001: Carol S Giometti; Claudia I Reich; Sandra L Tollaksen; György Babnigg; Hanjo Lim; John R Yates; Gary J Olsen
Structural modifications of Methanococcus jannaschii flagellin proteins revealed by proteome analysis.
Proteomics 2001;1(8):1033-42.
2001: R Verma; H McDonald; John R Yates; Raymond J Deshaies
Selective degradation of ubiquitinated Sic1 by purified 26S proteasome yields active S phase cyclin-Cdk.
Molecular cell 2001;8(2):439-48.
2001: Michael Washburn; Dirk Wolters; John R Yates
Large-scale analysis of the yeast proteome by multidimensional protein identification technology.
Nature biotechnology 2001;19(3):242-7.
2001: Steven J Bark; Nemone Muster; John R Yates; Gary Siuzdak
High-temperature protein mass mapping using a thermophilic protease.
Journal of the American Chemical Society 2001;123(8):1774-5.
2000: Y Hefner; A G Borsch-Haubold; M Murakami; Jonathan Wilde; S Pasquet; DM Schieltz; Farideh Ghomashchi; John R Yates; Christopher G Armstrong; A Paterson; Philip Cohen; R Fukunaga; Tony Hunter; I Kudo; Steve P Watson; Michael H Gelb
Serine 727 phosphorylation and activation of cytosolic phospholipase A2 by MNK1-related protein kinases.
The Journal of biological chemistry 2000;275(48):37542-51.
2000: Christine C Wu; John R Yates; Margaret C. Neville; Kathryn E Howell
Proteomic analysis of two functional states of the Golgi complex in mammary epithelial cells.
Traffic (Copenhagen, Denmark) 2000;1(10):769-82.
2000: W Hayes McDonald; John R Yates
Proteomic tools for cell biology.
Traffic (Copenhagen, Denmark) 2000;1(10):747-54.
2000: C C Wu; Kathryn E Howell; Margaret C. Neville; John R Yates; James L McManaman
Proteomics reveal a link between the endoplasmic reticulum and lipid secretory mechanisms in mammary epithelial cells.
Electrophoresis 2000;21(16):3470-82.
2000: R S Taylor; C C Wu; LG Hays; J K Eng; John R Yates; Kathryn E Howell
Proteomics of rat liver Golgi complex: minor proteins are identified through sequential fractionation.
Electrophoresis 2000;21(16):3441-59.
2000: CL Gatlin; Jimmy K Eng; S T Cross; J C Detter; John R Yates
Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry.
Analytical chemistry 2000;72(4):757-63.
2000: John R Yates; AJ Link; DM Schieltz
Direct analysis of proteins in mixtures. Application to protein complexes.
Methods in molecular biology (Clifton, N.J.) 2000;146():17-26.
2000: M E Whitten; Kohei Yokoyama; DM Schieltz; Farideh Ghomashchi; D Lam; John R Yates; Krzysztof Palczewski; Michael H Gelb
Structural analysis of protein prenyl groups and associated C-terminal modifications.
Methods in enzymology 2000;316():436-51.
1999: A Eberharter; David E Sterner; David Schieltz; A Hassan; John R Yates; Shelley L Berger; Jerry L Workman
The ADA complex is a distinct histone acetyltransferase complex in Saccharomyces cerevisiae.
Molecular and cellular biology 1999;19(10):6621-31.
1999: W Tong; A Link; Jimmy K Eng; John R Yates
Identification of proteins in complexes by solid-phase microextraction/multistep elution/capillary electrophoresis/tandem mass spectrometry.
Analytical chemistry 1999;71(13):2270-8.
1999: AJ Link; J Eng; DM Schieltz; EB Carmack; Gregory J Mize; David R Morris; BM Garvik; John R Yates
Direct analysis of protein complexes using mass spectrometry.
Nature biotechnology 1999;17(7):676-82.
1999: John R Yates; EB Carmack; LG Hays; AJ Link; Jimmy K Eng
Automated protein identification using microcolumn liquid chromatography-tandem mass spectrometry.
Methods in molecular biology (Clifton, N.J.) 1999;112():553-69.
1998: Patrick A Grant; David Schieltz; Marilyn G Pray-Grant; John R Yates; Jerry L Workman
The ATM-related cofactor Tra1 is a component of the purified SAGA complex.
Molecular cell 1998;2(6):863-7.
1998: C W Carroll; R Altman; David Schieltz; John R Yates; Doug R Kellogg
The septins are required for the mitosis-specific activation of the Gin4 kinase.
The Journal of cell biology 1998;143(3):709-17.
1998: CL Gatlin; Gerd Kleemann; LG Hays; A J Link; John R Yates
Protein identification at the low femtomole level from silver-stained gels using a new fritless electrospray interface for liquid chromatography-microspray and nanospray mass spectrometry.
Analytical biochemistry 1998;263(1):93-101.
1998: John R Yates; S F Morgan; CL Gatlin; P R Griffin; Jimmy K Eng
Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysis.
Analytical chemistry 1998;70(17):3557-65.
1998: Patrick A Grant; David Schieltz; Marilyn G Pray-Grant; DJ Steger; Joseph C Reese; John R Yates; Jerry L Workman
A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation.
Cell 1998;94(1):45-53.
1998: John R Yates
Database searching using mass spectrometry data.
Electrophoresis 1998;19(6):893-900.
1998: James P Carney; richard s maser; HA Olivares; Elizabeth M Davis; Michelle M Le Beau; John R Yates; L Hays; William F Morgan; John H J Petrini
The hMre11/hRad50 protein complex and Nijmegen breakage syndrome: linkage of double-strand break repair to the cellular DNA damage response.
Cell 1998;93(3):477-86.
1998: A Ducret; I Van Oostveen; Jimmy K Eng; John R Yates; Ruedi Aebersold
High throughput protein characterization by automated reverse-phase chromatography/electrospray tandem mass spectrometry.
Protein science : a publication of the Protein Society 1998;7(3):706-19.
1997: A J Link; LG Hays; EB Carmack; John R Yates
Identifying the major proteome components of Haemophilus influenzae type-strain NCTC 8143.
Electrophoresis 1997;18(8):1314-34.
1997: John R Yates; A L McCormack; DM Schieltz; EB Carmack; A Link
Direct analysis of protein mixtures by tandem mass spectrometry.
Journal of protein chemistry 1997;16(5):495-7.
1997: A L McCormack; DM Schieltz; Bruce L Goode; S Yang; G Barnes; David G Drubin; John R Yates
Direct analysis and identification of proteins in mixtures by LC/MS/MS and database searching at the low-femtomole level.
Analytical chemistry 1997;69(4):767-76.
1997: K R Jonscher; John R Yates
Matrix-assisted laser desorption ionization/quadrupole ion trap mass spectrometry of peptides. Application to the localization of phosphorylation sites on the P protein from Sendai virus.
The Journal of biological chemistry 1997;272(3):1735-41.
1997: K R Jonscher; John R Yates
The quadrupole ion trap mass spectrometer--a small solution to a big challenge.
Analytical biochemistry 1997;244(1):1-15.
1996: D Figeys; A Ducret; John R Yates; Ruedi Aebersold
Protein identification by solid phase microextraction-capillary zone electrophoresis-microelectrospray-tandem mass spectrometry.
Nature biotechnology 1996;14(11):1579-83.
1996: John R Yates; A L McCormack; Jimmy K Eng
Mining genomes with MS.
Analytical chemistry 1996;68(17):534A-540A.
1996: John R Yates; A L McCormack; AJ Link; DM Schieltz; Jimmy K Eng; LG Hays
Future prospects for the analysis of complex biological systems using micro-column liquid chromatography-electrospray tandem mass spectrometry.
The Analyst 1996;121(7):65R-76R.
1996: K R Jonscher; John R Yates
Mixture analysis using a quadrupole mass filter/quadrupole ion trap mass spectrometer.
Analytical chemistry 1996;68(4):659-67.
1995: John R Yates; Jimmy K Eng; A L McCormack
Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases.
Analytical chemistry 1995;67(18):3202-10.
1995: John R Yates; Jimmy K Eng; A L McCormack; DM Schieltz
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database.
Analytical chemistry 1995;67(8):1426-36.
1995: A L McCormack; Ilkka Mononen; Vesa Kaartinen; John R Yates
Localization of the disulfide bond involved in post-translational processing of glycosylasparaginase and disrupted by a mutation in the Finnish-type aspartylglycosaminuria.
The Journal of biological chemistry 1995;270(7):3212-5.
1995: P R Griffin; Malcolm MacCoss; J K Eng; R A Blevins; J S Aaronson; John R Yates
Direct database searching with MALDI-PSD spectra of peptides.
Rapid communications in mass spectrometry : RCM 1995;9(15):1546-51.
1993: John R Yates; S Speicher; P R Griffin; T Hunkapiller
Peptide mass maps: a highly informative approach to protein identification.
Analytical biochemistry 1993;214(2):397-408.
1993: K Jonscher; G Currie; A L McCormack; John R Yates
Matrix-assisted laser desorption of peptides and proteins on a quadrupole ion trap mass spectrometer.
Rapid communications in mass spectrometry : RCM 1993;7(1):20-6.
1992: P H Petra; P R Griffin; John R Yates; K Moore; W Zhang
Complete enzymatic deglycosylation of native sex steroid-binding protein (SBP or SHBG) of human and rabbit plasma: effect on the steroid-binding activity.
Protein science : a publication of the Protein Society 1992;1(7):902-9.