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Shui Ye

Research Profile

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Oligonucleotide Array Sequence Analysis

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Respiratory Distress Syndrome, Adult

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TOP 3
Emily J Fox; J Steven Leeder; Shui Q Ye; Mara L Becker
Decreased expression of nicotinamide phosphoribosyltransferase in patients with juvenile idiopathic arthritis receiving methotrexate.
Karen Kover; Douglas C Bittel; Mark Clements; Nataliya Kibiryeva; Lesya Novikova; Lisa Stehno-Bittel; Jacob Stuhlsatz; Pei Y Tong; Dara Watkins; Yun Yan; Shui Q Ye; Wayne V Moore
Expression and regulation of nampt in human islets.
Mark W Lee; Yulia V Sevryugina; Aslam Khan; Shui Q Ye
Carboranes increase the potency of small molecule inhibitors of nicotinamide phosphoribosyltranferase.

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All Publications

2013: Emily J Fox; J Steven Leeder; Shui Q Ye; Mara L Becker
Decreased expression of nicotinamide phosphoribosyltransferase in patients with juvenile idiopathic arthritis receiving methotrexate.
The Journal of rheumatology 2013;40(5):741-2.
2013: Karen Kover; Douglas C Bittel; Mark Clements; Nataliya Kibiryeva; Lesya Novikova; Lisa Stehno-Bittel; Jacob Stuhlsatz; Pei Y Tong; Dara Watkins; Yun Yan; Shui Q Ye; Wayne V Moore
Expression and regulation of nampt in human islets.
PloS one 2013;8(3):e58767.
2012: Mark W Lee; Yulia V Sevryugina; Aslam Khan; Shui Q Ye
Carboranes increase the potency of small molecule inhibitors of nicotinamide phosphoribosyltranferase.
Journal of medicinal chemistry 2012;55(16):7290-4.
2012: Dilyara Cheranova; Margaret Gibson; Nataliya Kibiryeva; Li Q Zhang; Shui Q Ye
Pleiotropic functions of pre-B-cell colony-enhancing factor (PBEF) revealed by transcriptomics of human pulmonary microvascular endothelial cells treated with PBEFsiRNA.
Genes to cells : devoted to molecular & cellular mechanisms 2012;17(5):420-30.
2012: DP Heruth; Margaret Gibson; Dmitry N Grigoryev; Li Qin Zhang; Shui Q Ye
RNA-seq analysis of synovial fibroblasts brings new insights into rheumatoid arthritis.
Cell & bioscience 2012;2(1):43.
2012: Jing Bi; Hailong Li; Shui Q Ye; Shinghua Ding
Pre-B-cell colony-enhancing factor exerts a neuronal protection through its enzymatic activity and the reduction of mitochondrial dysfunction in in vitro ischemic models.
Journal of neurochemistry 2012;120(2):334-46.
2009: Peng Liu; Hailong Li; Javier Cepeda; Yue Xia; Jessica A Kempf; Hong Ye; Li Qin Zhang; Shui Q Ye
Regulation of inflammatory cytokine expression in pulmonary epithelial cells by pre-B-cell colony-enhancing factor via a nonenzymatic and AP-1-dependent mechanism.
The Journal of biological chemistry 2009;284(40):27344-51.
2009: An Chen; Beixue Gao; Jingping Zhang; Tamara McEwen; Shui Q Ye; Donna D Zhang; Deyu Fang
The HECT-type E3 ubiquitin ligase AIP2 inhibits activation-induced T-cell death by catalyzing EGR2 ubiquitination.
Molecular and cellular biology 2009;29(19):5348-56.
2008: Sang-Bum Hong; Yong Huang; Liliana Moreno Vinasco; Saad Sammani; Jaideep Moitra; Joseph W Barnard; Shwu-Fan Ma; Tamara Mirzapoiazova; Carrie Evenoski; Ryan R Reeves; Eddie T Chiang; Gabriel D Lang; Aliya N Husain; Steven M Dudek; Jeffrey Jacobson; Shui Q Ye; Yves lussier; Joe G. N. Garcia
Essential role of pre-B-cell colony enhancing factor in ventilator-induced lung injury.
American journal of respiratory and critical care medicine 2008;178(6):605-17.
2007: Stephanie A Nonas; Liliana Moreno Vinasco; Liliana Moreno Vinasco; Shwu-Fan Ma; Jeffrey Jacobson; Ankit A Desai; Steven M Dudek; Carlos Flores; Paul M Hassoun; Lee Sam; Shui Q Ye; Jaideep Moitra; Joe Barnard; Dmitry N Grigoryev; Yves lussier; Joe G. N. Garcia
Use of consomic rats for genomic insights into ventilator-associated lung injury.
American journal of physiology. Lung cellular and molecular physiology 2007;293(2):L292-302.
2007: Li Gao; Carlos Flores; Shwu Fan-Ma; Edmund Miller; Jaideep Moitra; Liliana Moreno Vinasco; Raj Wadgaonkar; Bret Simon; Roy G Brower; Jonathan Sevransky; Rubin M Tuder; James P Maloney; Marc Moss; Carl Shanholtz; Charles R Yates; G Umberto Meduri; Shui Q Ye; Kathleen C Barnes; Joe G. N. Garcia
Macrophage migration inhibitory factor in acute lung injury: expression, biomarker, and associations.
Translational research : the journal of laboratory and clinical medicine 2007;150(1):18-29.
2006: Bret Simon; RONALD EASLEY; Dmitry N Grigoryev; Shwu-Fan Ma; Shui Q Ye; Tera Lavoie; Rubin M Tuder; Joe G. N. Garcia
Microarray analysis of regional cellular responses to local mechanical stress in acute lung injury.
American journal of physiology. Lung cellular and molecular physiology 2006;291(5):L851-61.
2006: Li Gao; Audrey Grant; INDRANI HALDER; Roy G Brower; Jonathan Sevransky; James P Maloney; Marc Moss; Carl Shanholtz; Charles R Yates; G Umberto Meduri; Mark D Shriver; Roxann G Ingersoll; Alan F Scott; Terri H beaty; Jaideep Moitra; Shwu-Fan Ma; Shui Q Ye; Kathleen C Barnes; Joe G. N. Garcia
Novel polymorphisms in the myosin light chain kinase gene confer risk for acute lung injury.
American journal of respiratory cell and molecular biology 2006;34(4):487-95.
2006: Erin E West; Tera Lavoie; Jonathan B Orens; Edward S Chen; Shui Q Ye; Fred D Finkelman; Joe G. N. Garcia; John F McDyer
Pluripotent allospecific CD8+ effector T cells traffic to lung in murine obliterative airway disease.
American journal of respiratory cell and molecular biology 2006;34(1):108-18.
2005: Shui Q Ye; Li Q Zhang; Djanybek Adyshev; Peter Usatyuk; Alexander N Garcia; Tera Lavoie; Alexander Dmitriyevich Verin; Viswanathan Natarajan; Joe G. N. Garcia
Pre-B-cell-colony-enhancing factor is critically involved in thrombin-induced lung endothelial cell barrier dysregulation.
Microvascular research 2005;70(3):142-51.
2005: Jianguo Li; Dmitry N Grigoryev; Shui Q Ye; Laura Thorne; Alan R Schwartz; Philip L. Smith; Christopher P O'Donnell; Vsevolod Y Polotsky
Chronic intermittent hypoxia upregulates genes of lipid biosynthesis in obese mice.
Journal of applied physiology (Bethesda, Md. : 1985) 2005;99(5):1643-8.
2005: Shwu-Fan Ma; Dmitry N Grigoryev; Angela D Taylor; Stephanie A Nonas; Saad Sammani; Shui Q Ye; Joe G. N. Garcia
Bioinformatic identification of novel early stress response genes in rodent models of lung injury.
American journal of physiology. Lung cellular and molecular physiology 2005;289(3):L468-77.
2005: Michelle M Kittleson; Khalid M Minhas; Rafael A Irizarry; Shui Q Ye; Gina Edness; Elayne Breton; John V Conte; Gordon F Tomaselli; Joe G. N. Garcia; Joshua M Hare
Gene expression in giant cell myocarditis: Altered expression of immune response genes.
International journal of cardiology 2005;102(2):333-40.
2005: Michelle M Kittleson; Khalid M Minhas; Rafael A Irizarry; Shui Q Ye; Gina Edness; Elayne Breton; John V Conte; Gordon F Tomaselli; Joe G. N. Garcia; Joshua M Hare
Gene expression analysis of ischemic and nonischemic cardiomyopathy: shared and distinct genes in the development of heart failure.
Physiological genomics 2005;21(3):299-307.
2005: Rafael A Irizarry; Daniel S Warren; Forrest Spencer; Irene F Kim; Shyam Biswal; Bryan C Frank; Edward Gabrielson; Joe G. N. Garcia; Joel Geoghegan; Gregory G Germino; Constance A Griffin; Sara C Hilmer; Eric Hoffman; Anne E Jedlicka; Ernest Kawasaki; Francisco Martínez-Murillo; Laura Morsberger; Hannah Lee; David Petersen; John Quackenbush; Alan L Scott; Michael Wilson; Yanqin Yang; Shui Q Ye; Wayne Yu
Multiple-laboratory comparison of microarray platforms.
Nature methods 2005;2(5):345-50.
2005: James H Finigan; Steven M Dudek; Patrick A Singleton; Eddie T Chiang; Jeffrey Jacobson; Sara M Camp; Shui Q Ye; Joe G. N. Garcia
Activated protein C mediates novel lung endothelial barrier enhancement: role of sphingosine 1-phosphate receptor transactivation.
The Journal of biological chemistry 2005;280(17):17286-93.
2005: James R McGlothlin; Li Gao; Tera Lavoie; Bret Simon; RONALD EASLEY; Shwu-Fan Ma; Bernice B Rumala; Joe G. N. Garcia; Shui Q Ye
Molecular cloning and characterization of canine pre-B-cell colony-enhancing factor.
Biochemical genetics 2005;43(3-4):127-41.
2005: Shui Q Ye; Bret Simon; James P Maloney; April Zambelli-Weiner; Li Gao; Audrey Grant; RONALD EASLEY; Bryan J McVerry; Rubin M Tuder; Theodore J Standiford; Roy G Brower; Kathleen C Barnes; Joe G. N. Garcia
Pre-B-cell colony-enhancing factor as a potential novel biomarker in acute lung injury.
American journal of respiratory and critical care medicine 2005;171(4):361-70.
2005: Dominador J Manalo; Ashley Rowan; Tera Lavoie; Lakshmi Natarajan; Brian D Kelly; Shui Q Ye; Joe G. N. Garcia; Gregg L Semenza
Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1.
Blood 2005;105(2):659-69.
2005: Dmitry N Grigoryev; Shwu-Fan Ma; Bret Simon; Rafael A Irizarry; Shui Q Ye; Joe G. N. Garcia
In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip technology.
BMC genomics 2005;6():62.
2004: Michelle M Kittleson; Shui Q Ye; Rafael A Irizarry; Khalid M Minhas; Gina Edness; John V Conte; Giovanni Parmigiani; Leslie W Miller; Yingjie Chen; Jennifer L Hall; Joe G. N. Garcia; Joshua M Hare
Identification of a gene expression profile that differentiates between ischemic and nonischemic cardiomyopathy.
Circulation 2004;110(22):3444-51.
2004: Jeffrey Jacobson; Steven M Dudek; Konstantin G Birukov; Shui Q Ye; Dmitry N Grigoryev; Reda E Girgis; Joe G. N. Garcia
Cytoskeletal activation and altered gene expression in endothelial barrier regulation by simvastatin.
American journal of respiratory cell and molecular biology 2004;30(5):662-70.
2004: Dmitry N Grigoryev; Shwu-Fan Ma; Rafael A Irizarry; Shui Q Ye; John Quackenbush; Joe G. N. Garcia
Orthologous gene-expression profiling in multi-species models: search for candidate genes.
Genome biology 2004;5(5):R34.
2003: Konstantin G Birukov; Jeffrey Jacobson; Alejandro A Flores; Shui Q Ye; Anna A Birukova; Alexander Dmitriyevich Verin; Joe G. N. Garcia
Magnitude-dependent regulation of pulmonary endothelial cell barrier function by cyclic stretch.
American journal of physiology. Lung cellular and molecular physiology 2003;285(4):L785-97.
2003: Thomas P Cappola; Leslie Cope; Amy Cernetich; Lili A Barouch; Khalid M Minhas; Rafael A Irizarry; Giovanni Parmigiani; Sarfraz Durrani; Tera Lavoie; Eric Hoffman; Shui Q Ye; Joe G. N. Garcia; Joshua M Hare
Deficiency of different nitric oxide synthase isoforms activates divergent transcriptional programs in cardiac hypertrophy.
Physiological genomics 2003;14(1):25-34.
2002: Li Gao; Curtis Gabriel; Tera Lavoie; Shui Q Ye
An improved RSP method to detect HpaI polymorphism in the apolipoprotein C-1 gene promoter.
BMC medical genetics 2002;3():13.
2002: Shui Q Ye; David C Usher; Li Q Zhang
Gene expression profiling of human diseases by serial analysis of gene expression.
Journal of biomedical science 2002;9(5):384-94.
2002: Shui Q Ye; Tera Lavoie; David C Usher; Li Q Zhang
Microarray, SAGE and their applications to cardiovascular diseases.
Cell research 2002;12(2):105-15.
2001: F Zheng; Curtis Gabriel; A Batavia; X Zhou; Shui Q Ye
A MnlI restriction site polymorphism in the interleukin-10 gene promoter.
Biochemical genetics 2001;39(9-10):351-6.
2001: F Zheng; J A Chevalier; Li Q Zhang; Donna G Virgil; Shui Q Ye; Peter O Kwiterovich
An HphI polymorphism in the E-selectin gene is associated with premature coronary artery disease.
Clinical genetics 2001;59(1):58-64.
2000: Shui Q Ye; Li Q Zhang; F Zheng; Donna G Virgil; Peter O Kwiterovich
miniSAGE: gene expression profiling using serial analysis of gene expression from 1 microg total RNA.
Analytical biochemistry 2000;287(1):144-52.
2000: Shui Q Ye; Peter O Kwiterovich
Influence of genetic polymorphisms on responsiveness to dietary fat and cholesterol.
The American journal of clinical nutrition 2000;72(5 Suppl):1275S-1284S.
1999: Shui Q Ye; David C Usher; Donna G Virgil; Li Q Zhang; S E Yochim; R Gupta
A PstI polymorphism detects the mutation of serine128 to arginine in CD 62E gene - a risk factor for coronary artery disease.
Journal of biomedical science 1999;6(1):18-21.