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Nengjun Yi

Research Profile

Genes & Molecular Sequences

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Publications

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Jun Chen; Xiao-Feng Chen; Baohui Han; Jun He; Zhe Lei; Xiangdong Li; Reng-Yun Liu; Daru Lu; Boris Pasche; Lixin Yang; Nengjun Yi; Kui Zhang; Jun Zhao; Xueying Zhao; Yifeng Zhou; Hong-Tao Zhang
A two-SNP IL-6 promoter haplotype is associated with increased lung cancer risk.
Ana I Vazquez; Nengjun Yi; Gustavo de Los Campos; Daniel Gianola; Yann C Klimentidis; G J M Rosa; David B Allison
A comprehensive genetic approach for improving prediction of skin cancer risk in humans.
Wan-Yu Lin; Guimin Gao; Hemant K Tiwari; Nengjun Yi; Kui Zhang; Degui Zhi; Nianjun Liu
Haplotype-based methods for detecting uncommon causal variants with common SNPs.

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All Publications

2013: Jun Chen; Xiao-Feng Chen; Baohui Han; Jun He; Zhe Lei; Xiangdong Li; Reng-Yun Liu; Daru Lu; Boris Pasche; Lixin Yang; Nengjun Yi; Kui Zhang; Jun Zhao; Xueying Zhao; Yifeng Zhou; Hong-Tao Zhang
A two-SNP IL-6 promoter haplotype is associated with increased lung cancer risk.
Journal of cancer research and clinical oncology 2013;139(2):231-42.
2012: Ana I Vazquez; Nengjun Yi; Gustavo de Los Campos; Daniel Gianola; Yann C Klimentidis; G J M Rosa; David B Allison
A comprehensive genetic approach for improving prediction of skin cancer risk in humans.
Genetics 2012;192(4):1493-502.
2012: Wan-Yu Lin; Guimin Gao; Hemant K Tiwari; Nengjun Yi; Kui Zhang; Degui Zhi; Nianjun Liu
Haplotype-based methods for detecting uncommon causal variants with common SNPs.
Genetic epidemiology 2012;36(6):572-82.
2012: J W Zimmerman; D Absher; A Barbault; I Brezovich; F P Costa; N Kuster; R M Myers; M J Pennison; R Ramaker; C T Yang; Nengjun Yi; B Pasche
Cancer cell proliferation is inhibited by specific modulation frequencies.
British journal of cancer 2012;106(2):307-13.
2012: Nengjun Yi; Shuangge Ma
Hierarchical shrinkage priors and model fitting for high-dimensional generalized linear models.
Statistical applications in genetics and molecular biology 2012;11(6):.
2012: Samprit Banerjee; Nengjun Yi
Identifying QTL for multiple complex traits in experimental crosses.
Methods in molecular biology (Clifton, N.J.) 2012;871():205-25.
2011: Nengjun Yi; Degui Zhi; Nianjun Liu; Jun Li
Hierarchical generalized linear models for multiple groups of rare and common variants: jointly estimating group and individual-variant effects.
PLoS genetics 2011;7(12):e1002382.
2011: Virginia G Kaklamani; Christos Mantzoros; Carole Oddoux; Kenneth Offit; Harry Ostrer; Maureen Sadim; Nengjun Yi; Kui Zhang; Boris Pasche
Polymorphisms of ADIPOQ and ADIPOR1 and prostate cancer risk.
Metabolism: clinical and experimental 2011;60(9):1234-43.
2011: Wan-Yu Lin; Nengjun Yi; Boshao Zhang; Guimin Gao; Nianjun Liu
Evaluation of pooled association tests for rare variant identification.
BMC proceedings 2011;5 Suppl 9():S118.
2011: Jun Li; Kui Zhang; Nengjun Yi
A Bayesian hierarchical model for detecting haplotype-haplotype and haplotype-environment interactions in genetic association studies.
Human heredity 2011;71(3):148-60.
2011: Guodong Wu; Nengjun Yi; Devin Absher; Degui Zhi
Statistical quantification of methylation levels by next-generation sequencing.
PloS one 2011;6(6):e21034.
2011: John J Arcaroli; Nianjun Liu; Nengjun Yi; Edward Abraham
Association between IL-32 genotypes and outcome in infection-associated acute lung injury.
Critical care (London, England) 2011;15(3):R138.
2011: Virginia Kaklamani; Nengjun Yi; Maureen Sadim; Kalliopi Siziopikou; Kui Zhang; Yanfei Xu; Sarah Tofilon; Surbhi Agarwal; Boris Pasche; Christos Mantzoros
The role of the fat mass and obesity associated gene (FTO) in breast cancer risk.
BMC medical genetics 2011;12():52.
2011: Nengjun Yi; Degui Zhi
Bayesian analysis of rare variants in genetic association studies.
Genetic epidemiology 2011;35(1):57-69.
2011: Nengjun Yi; Virginia G Kaklamani; Boris Pasche
Bayesian analysis of genetic interactions in case-control studies, with application to adiponectin genes and colorectal cancer risk.
Annals of human genetics 2011;75(1):90-104.
2010: Nengjun Yi
Statistical analysis of genetic interactions.
Genetics research 2010;92(5-6):443-59.
2010: Boris Pasche; Nengjun Yi
Candidate gene association studies: successes and failures.
Current opinion in genetics & development 2010;20(3):257-61.
2010: Jun Li; Richard Reynolds; Daniel Pomp; David Allison; Nengjun Yi
Mapping interacting QTL for count phenotypes using hierarchical Poisson and binomial models: an application to reproductive traits in mice.
Genetics research 2010;92(1):13-23.
2010: Boris Pasche; Kari B Wisinski; Maureen Sadim; Virginia Kaklamani; Michael J Pennison; Qinghua Zeng; Naresh Bellam; Jacquelyn Zimmerman; Nengjun Yi; Kui Zhang; John Baron; Daniel O Stram; M Geoffrey Hayes
Constitutively decreased TGFBR1 allelic expression is a common finding in colorectal cancer and is associated with three TGFBR1 SNPs.
Journal of experimental & clinical cancer research : CR 2010;29():57.
2010: Georgina A Ankra-Badu; Daniel Shriner; Elisabeth Le Bihan-Duval; Sandrine Mignon-Grasteau; Frédérique Pitel; Catherine Beaumont; Michel J Duclos; Jean Simon; Tom E Porter; Alain Vignal; Larry A Cogburn; David Allison; Nengjun Yi; Samuel E Aggrey
Mapping main, epistatic and sex-specific QTL for body composition in a chicken population divergently selected for low or high growth rate.
BMC genomics 2010;11():107.
2010: R J Reynolds; J M Kelley; Laura B Hughes; Nengjun Yi; S Louis Bridges
Genetic association of htSNPs across the major histocompatibility complex with rheumatoid arthritis in an African-American population.
Genes and immunity 2010;11(1):94-7.
2009: Nengjun Yi; Samprit Banerjee
Hierarchical generalized linear models for multiple quantitative trait locus mapping.
Genetics 2009;181(3):1101-13.
2009: G A Ankra-Badu; Daniel Pomp; Daniel Shriner; David Allison; Nengjun Yi
Genetic influences on growth and body composition in mice: multilocus interactions.
International journal of obesity (2005) 2009;33(1):89-95.
2008: Samprit Banerjee; Brian S Yandell; Nengjun Yi
Bayesian quantitative trait loci mapping for multiple traits.
Genetics 2008;179(4):2275-89.
2008: Nengjun Yi; Shizhong Xu
Bayesian LASSO for quantitative trait loci mapping.
Genetics 2008;179(2):1045-55.
2008: Nengjun Yi; Daniel Shriner
Advances in Bayesian multiple quantitative trait loci mapping in experimental crosses.
Heredity 2008;100(3):240-52.
2007: Nengjun Yi; Samprit Banerjee; Daniel Pomp; Brian S Yandell
Bayesian mapping of genomewide interacting quantitative trait loci for ordinal traits.
Genetics 2007;176(3):1855-64.
2007: Nengjun Yi; Daniel Shriner; Samprit Banerjee; Tapan Mehta; Daniel Pomp; Brian S Yandell
An efficient Bayesian model selection approach for interacting quantitative trait loci models with many effects.
Genetics 2007;176(3):1865-77.
2007: Brian S Yandell; Tapan Mehta; Samprit Banerjee; Daniel Shriner; Ramprasad Venkataraman; Jee Young Moon; W Whipple Neely; Hao Wu; Randy Von Smith; Nengjun Yi
R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses.
Bioinformatics (Oxford, England) 2007;23(5):641-3.
2007: Hui-Chen Hsu; Lu Lu; Nengjun Yi; Gary Van Zant; Robert Williams; John D Mountz
Quantitative trait locus (QTL) mapping in aging systems.
Methods in molecular biology (Clifton, N.J.) 2007;371():321-48.
2007: Solomon K Musani; Daniel Shriner; Nianjun Liu; Rui Feng; Christopher S Coffey; Nengjun Yi; Hemant K Tiwari; David Allison
Detection of gene x gene interactions in genome-wide association studies of human population data.
Human heredity 2007;63(2):67-84.
2006: Solomon K Musani; Huang-Ge Zhang; Hui-Chen Hsu; Nengjun Yi; bernard gorman; David Allison; John D Mountz
Principal component analysis of quantitative trait loci for immune response to adenovirus in mice.
Hereditas 2006;143(2006):189-97.
2006: Runqing Yang; Nengjun Yi; Shizhong Xu
Box-Cox transformation for QTL mapping.
Genetica 2006;128(1-3):133-43.
2006: Nengjun Yi; Denise K Zinniel; Kyoungmi Kim; Eugene J Eisen; Alfred A Bartolucci; David Allison; Daniel Pomp
Bayesian analyses of multiple epistatic QTL models for body weight and body composition in mice.
Genetical research 2006;87(1):45-60.
2005: Maria De Luca; Nengjun Yi; David Allison; Jeff Leips; Douglas M Ruden
Mapping quantitative trait loci affecting variation in Drosophila triacylglycerol storage.
Obesity research 2005;13(9):1596-605.
2005: Nengjun Yi; Brian S Yandell; Gary Churchill; David Allison; Eugene J Eisen; Daniel Pomp
Bayesian model selection for genome-wide epistatic quantitative trait loci analysis.
Genetics 2005;170(3):1333-44.
2005: Huang-Ge Zhang; Katherine A High; Qi Wu; Pingar Yang; Alexander Schlachterman; Shaohua Yu; Nengjun Yi; Hui-Chen Hsu; John D Mountz
Genetic analysis of the antibody response to AAV2 and factor IX.
Molecular therapy : the journal of the American Society of Gene Therapy 2005;11(6):866-74.
2005: Joseph R Vasselli; Richard Weindruch; Steven B Heymsfield; F Xavier Pi-Sunyer; Carol N Boozer; Nengjun Yi; Chenxi Wang; Angelo Pietrobelli; David Allison
Intentional weight loss reduces mortality rate in a rodent model of dietary obesity.
Obesity research 2005;13(4):693-702.
2005: John D Mountz; Pingar Yang; Qi Wu; J Zhou; Albert Tousson; A Fitzgerald; J Allen; X Wang; Samuel Cartner; William E Grizzle; Nengjun Yi; L Lu; Robert Williams; Hui-Chen Hsu
Genetic segregation of spontaneous erosive arthritis and generalized autoimmune disease in the BXD2 recombinant inbred strain of mice.
Scandinavian journal of immunology 2005;61(2):128-38.
2005: Jeffrey H Ruth; M Asif Amin; James M Woods; Xiaodong He; Sharon Samuel; Nengjun Yi; Christian S Haas; Alisa E Koch; Daniel C Bullard
Accelerated development of arthritis in mice lacking endothelial selectins.
Arthritis research & therapy 2005;7(5):R959-70.
2005: Christiane Hansen; Nengjun Yi; Yuan Ming Zhang; Shizhong Xu; Jan Gavora; Hans H Cheng
Identification of QTL for production traits in chickens.
Animal biotechnology 2005;16(1):67-79.
2004: Gary Churchill; David C Airey; Hooman Allayee; Joe M Angel; Alan D Attie; Jackson Beatty; William D Beavis; John K Belknap; Beth Bennett; Wade Berrettini; Andre Bleich; Molly Bogue; Karl W Broman; Kari J Buck; Ed Buckler; Margit Burmeister; Elissa J Chesler; James M Cheverud; Steven Clapcote; Melloni N Cook; Roger D Cox; John C Crabbe; Wim Crusio; Ariel Darvasi; Christian Deschepper; R W Doerge; Charles Farber; Jiri Forejt; Daniel Gaile; Steven J Garlow; Hartmut Geiger; Howard Gershenfeld; Terry Gordon; Jing Gu; Weikuan Gu; Gerald de Haan; Nancy L Hayes; Craig Heller; Heinz Himmelbauer; Robert Hitzemann; Kent Hunter; Hui-Chen Hsu; Fuad A Iraqi; Boris Ivandic; Howard J Jacob; Ritsert C Jansen; Karl Jepsen; Dabney K Johnson; Thomas Johnson; Gerd Kempermann; Christina Kendziorski; Malak Kotb; R Frank Kooy; Bastien Llamas; Frank Lammert; Jean-Michel Lassalle; Pedro R Lowenstein; Lu Lu; Aldons Lusis; Kenneth F Manly; Ralph Marcucio; Doug Matthews; Juan F Medrano; Darla R Miller; Guy Mittleman; Beverly A Mock; Jeffrey S Mogil; Xavier Montagutelli; Grant Morahan; David G Morris; Richard Mott; Joseph H Nadeau; Hiroki Nagase; Richard Nowakowski; Bruce F O'Hara; Alexander V Osadchuk; Grier P Page; Beverly Paigen; Kenneth Paigen; Abraham A Palmer; Huei-Ju Pan; Leena Peltonen-Palotie; Jeremy Peirce; Daniel Pomp; Michal Pravenec; Daniel R Prows; Zhonghua Qi; Roger H Reeves; John Roder; Glenn D Rosen; Eric E Schadt; Leonard C Schalkwyk; Ze'ev Seltzer; Kazuhiro Shimomura; Siming Shou; Mikko J Sillanpää; Linda D Siracusa; Hans-Willem Snoeck; Jimmy Spearow; Karen Svenson; Lisa Tarantino; David Threadgill; Linda A Toth; William Valdar; Fernando Villena; Craig H Warden; Steve Whatley; Robert W Williams; Timothy Wiltshire; Nengjun Yi; Dabao Zhang; Min Zhang; Fei Zou
The Collaborative Cross, a community resource for the genetic analysis of complex traits.
Nature genetics 2004;36(11):1133-7.
2004: Timothy M Beasely; Dongyan Yang; Nengjun Yi; Daniel C Bullard; Elizabeth L Travis; Christopher I Amos; Shizhong Xu; David Allison
Joint tests for quantitative trait loci in experimental crosses.
Genetics, selection, evolution : GSE 2004;36(6):601-19.
2004: Nengjun Yi; Sally Chiu; David Allison; Janis S Fisler; Craig H Warden
Epistatic interaction between two nonstructural loci on chromosomes 7 and 3 influences hepatic lipase activity in BSB mice.
Journal of lipid research 2004;45(11):2063-70.
2004: Nengjun Yi
A unified Markov chain Monte Carlo framework for mapping multiple quantitative trait loci.
Genetics 2004;167(2):967-75.
2004: Nengjun Yi; Adam Diament; Sally Chiu; Kyoungmi Kim; David Allison; Janis S Fisler; Craig H Warden
Characterization of epistasis influencing complex spontaneous obesity in the BSB model.
Genetics 2004;167(1):399-409.
2004: Poupak Farahani; Janis S Fisler; Howard Wong; Adam Diament; Nengjun Yi; Craig H Warden
Reciprocal hemizygosity analysis of mouse hepatic lipase reveals influence on obesity.
Obesity research 2004;12(2):292-305.
2004: Nengjun Yi; Shizhong Xu; Varghese George; David Allison
Mapping multiple quantitative trait Loci for ordinal traits.
Behavior genetics 2004;34(1):3-15.
2004: Craig H Warden; Nengjun Yi; Janis S Fisler
Epistasis among genes is a universal phenomenon in obesity: evidence from rodent models.
Nutrition (Burbank, Los Angeles County, Calif.) 2004;20(1):74-7.
2004: Huang-Ge Zhang; Hui-Chen Hsu; Ping-Ar Yang; X Yang; Qi Wu; Zhongyu Liu; Nengjun Yi; John D Mountz
Identification of multiple genetic loci that regulate adenovirus gene therapy.
Gene therapy 2004;11(1):4-14.
2003: Shizhong Xu; Nengjun Yi; David T Burke; Andrzej T Galecki; Richard A Miller
An EM algorithm for mapping binary disease loci: application to fibrosarcoma in a four-way cross mouse family.
Genetical research 2003;82(2):127-38.
2003: Nengjun Yi; Shizhong Xu; David Allison
Bayesian model choice and search strategies for mapping interacting quantitative trait Loci.
Genetics 2003;165(2):867-83.
2003: Hui-Chen Hsu; Huang-Ge Zhang; Lina Li; Nengjun Yi; Ping-Ar Yang; Qi Wu; J Zhou; Sheher Sun; Xin Xu; X Yang; L Lu; Gary Van Zant; Robert Williams; David Allison; John D Mountz
Age-related thymic involution in C57BL/6J x DBA/2J recombinant-inbred mice maps to mouse chromosomes 9 and 10.
Genes and immunity 2003;4(6):402-10.
2003: Nengjun Yi; Varghese George; David Allison
Stochastic search variable selection for identifying multiple quantitative trait loci.
Genetics 2003;164(3):1129-38.
2002: Nengjun Yi; Shizhong Xu
Linkage analysis of quantitative trait loci in multiple line crosses.
Genetica 2002;114(3):217-30.
2002: Nengjun Yi; Shizhong Xu
Mapping quantitative trait loci with epistatic effects.
Genetical research 2002;79(2):185-98.
2001: Nengjun Yi; Shizhong Xu
Bayesian mapping of quantitative trait loci under complicated mating designs.
Genetics 2001;157(4):1759-71.
2000: Shizhong Xu; Nengjun Yi
Mixed model analysis of quantitative trait loci.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(26):14542-7.
2000: Nengjun Yi; Shizhong Xu
Bayesian mapping of quantitative trait loci under the identity-by-descent-based variance component model.
Genetics 2000;156(1):411-22.
2000: Nengjun Yi; Shizhong Xu
Bayesian mapping of quantitative trait loci for complex binary traits.
Genetics 2000;155(3):1391-403.
1999: Nengjun Yi; Shizhong Xu
A random model approach to mapping quantitative trait loci for complex binary traits in outbred populations.
Genetics 1999;153(2):1029-40.
1999: Nengjun Yi; Shizhong Xu
Mapping quantitative trait loci for complex binary traits in outbred populations.
Heredity 1999;82 ( Pt 6)():668-76.