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Bauke Ylstra

Research Profile

Devices

Oligonucleotide Array Sequence Analysis

Procedures

Concepts & Ideas

Gene Dosage

Disorders

Phenomena

Nucleic Acid Hybridization

Genes & Molecular Sequences

Genome, Human

Physiology

Chemicals & Drugs

DNA, Neoplasm

Anatomy

Tumor Cell Line

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Publications

TOP 3
Marleen J Ter Avest; Bauke Ylstra; Katrien Grünberg; Pieter E Postmus; Romane M Schook; Marinus A Paul
Benefit of a second opinion: intrapulmonary metastases or multiple primary tumors?
Robert A A van Boerdonk; Bauke Ylstra; Elisabeth Bloemena; Ruud H Brakenhoff; Johannes M A Daniels; Katrien Grunberg; Oscar Krijgsman; Chris J L M Meijer; Egbert F Smit; Peter J F Snijders; Renske D M Steenbergen; Daniëlle A M Heideman
High-risk human papillomavirus-positive lung cancer: molecular evidence for a pattern of pulmonary metastasis.
Benjamin Otto; Klaus Pantel; Udo Schumacher; Reiner Siebert; Thomas Streichert; Lars O Baumbusch; Wolfgang Deppert; Katharina Gruner; Christina Heinlein; José Ignacio Martin-Subero; Peter Nollau; Christoph Wagener; Florian Wegwitz; Bauke Ylstra; Genrich V Tolstonog
Low-grade and high-grade mammary carcinomas in WAP-T transgenic mice are independent entities distinguished by Met expression.

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All Publications

2013: Marleen J Ter Avest; Bauke Ylstra; Katrien Grünberg; Pieter E Postmus; Romane M Schook; Marinus A Paul
Benefit of a second opinion: intrapulmonary metastases or multiple primary tumors?
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2013;8(6):e54-6.
2013: Robert A A van Boerdonk; Bauke Ylstra; Elisabeth Bloemena; Ruud H Brakenhoff; Johannes M A Daniels; Katrien Grunberg; Oscar Krijgsman; Chris J L M Meijer; Egbert F Smit; Peter J F Snijders; Renske D M Steenbergen; Daniëlle A M Heideman
High-risk human papillomavirus-positive lung cancer: molecular evidence for a pattern of pulmonary metastasis.
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2013;8(6):711-8.
2013: Benjamin Otto; Klaus Pantel; Udo Schumacher; Reiner Siebert; Thomas Streichert; Lars O Baumbusch; Wolfgang Deppert; Katharina Gruner; Christina Heinlein; José Ignacio Martin-Subero; Peter Nollau; Christoph Wagener; Florian Wegwitz; Bauke Ylstra; Genrich V Tolstonog
Low-grade and high-grade mammary carcinomas in WAP-T transgenic mice are independent entities distinguished by Met expression.
International journal of cancer. Journal international du cancer 2013;132(6):1300-10.
2013: Catherine Naughton; James G Prendergast; Bauke Ylstra; Ioulia K Mati; Nicolaos Avlonitis; Mark Bradley; Scott L Cockroft; Samuel Corless; Paul P Eijk; Nick Gilbert
Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.
Nature structural & molecular biology 2013;20(3):387-95.
2013: Oscar Krijgsman; Gerrit A Meijer; Clemens H M Mellink; Aggie W Nieuwint; Renske D M Steenbergen; Hendrik F van Essen; Marjan M Weiss; Michel L M Berens; Paul P Eijk; Daniëlle Israeli; Bauke Ylstra
Detection limits of DNA copy number alterations in heterogeneous cell populations.
Cellular oncology (Dordrecht) 2013;36(1):27-36.
2013: Benjamin Nota; Nico M van Straalen; Bauke Ylstra; Maarten de Korte; Dick Roelofs
Genetic variation in parthenogenetic collembolans is associated with differences in fitness and cadmium-induced transcriptome responses.
Environmental science & technology 2013;47(2):1155-62.
2013: Mariska Bierkens; Leontien Bosch; Annelieke Jaspers; Oscar Krijgsman; Chris J L M Meijer; Gerrit A Meijer; Peter J F Snijders; Saskia M Wilting; Bauke Ylstra; Renske D M Steenbergen
Focal aberrations indicate EYA2 and hsa-miR-375 as oncogene and tumor suppressor in cervical carcinogenesis.
Genes, chromosomes & cancer 2013;52(1):56-68.
2013: Leonie J M Mekenkamp; Josien C Haan; Daniëlle Israeli; Miriam Koopman; Gerrit A Meijer; Cornelis J A Punt; Steven Teerenstra; M Elisa Vink-Börger; Bauke Ylstra; Iris D Nagtegaal
Chromosome 20p11 gains are associated with liver-specific metastasis in patients with colorectal cancer.
Gut 2013;62(1):94-101.
2012: Quirinus J M Voorham; Bauke Ylstra; Tomio Arai; Beatriz Carvalho; Adriaan P de Bruïne; Heike Grabsch; Ekaterina S. Jordanova; Martin Kliment; Sandra Mongera; Chris J J Mulder; Philip Quirke; Bjorn J Rembacken; Eveline J A Rondagh; Silvia Sanduleanu; Angela J Spiertz; Mark A van de Wiel; Manon van Engeland; Nicole C T van Grieken; Gerrit A Meijer
Chromosome 5q loss in colorectal flat adenomas.
Clinical cancer research : an official journal of the American Association for Cancer Research 2012;18(17):4560-9.
2012: Mariska Bierkens; Maaike C G Bleeker; Ekaterina S. Jordanova; Chris J L M Meijer; Peter J F Snijders; Mark A van de Wiel; Folkert J van Kemenade; Wessel N van Wieringen; Saskia M Wilting; Bauke Ylstra; Marjolein Bekker-Lettink; Renske D M Steenbergen
Chromosomal profiles of high-grade cervical intraepithelial neoplasia relate to duration of preceding high-risk human papillomavirus infection.
International journal of cancer. Journal international du cancer 2012;131(4):E579-85.
2012: Martijn R Groenendijk; Marinus A Paul; Paul P Eijk; Egbert F Smit; Erik Thunnissen; Mark A van de Wiel; Bauke Ylstra; Pieter E Postmus
An 82-year-old woman with small-cell lung cancer: relapse after 9 years or a new primary?
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2012;7(8):e3-5.
2012: Afra Zaal; Ronald P Zweemer; P M J J Berns; Isabelle Cadron; Oscar Krijgsman; Gerrit A Meijer; Wouter J Peyrot; Jurgen M J Piek; Petra J Timmers; J Baptist Trimbos; Maria E L van der Burg; Paulus van Diest; Wessel N van Wieringen; Jan H W Veerbeek; Ignace Vergote; René H M Verheijen; Bauke Ylstra
Genomic aberrations relate early and advanced stage ovarian cancer.
Cellular oncology (Dordrecht) 2012;35(3):181-8.
2012: Oscar Krijgsman; Gerrit A Meijer; Serge J Smeets; Sabine Tejpar; Hendrik F van Essen; Paul P Eijk; Josien C Haan; Danielle Israeli; Klaas Kok; Renske D M Steenbergen; Bauke Ylstra
CGH arrays compared for DNA isolated from formalin-fixed, paraffin-embedded material.
Genes, chromosomes & cancer 2012;51(4):344-52.
2012: Beatriz Carvalho; Remond J A Fijneman; Sandra Mongera; Askar Obulkasim; Cindy Postma; Anke H Sillars-Hardebol; Wim van Criekinge; Mark A van de Wiel; Bauke Ylstra; Jochim Terhaar Sive Droste; Gerrit A Meijer
Colorectal adenoma to carcinoma progression is accompanied by changes in gene expression associated with ageing, chromosomal instability, and fatty acid metabolism.
Cellular oncology (Dordrecht) 2012;35(1):53-63.
2012: J C Haan; P D Howdle; Gerrit A Meijer; C J J Mulder; Iris Nagtegaal; P Quirke; C J van de Velde; M A van de Wiel; N C T van Grieken; Wessel N van Wieringen; Tineke E Buffart; Paul P Eijk; Heike Grabsch; Bauke Ylstra
Small bowel adenocarcinoma copy number profiles are more closely related to colorectal than to gastric cancers.
Annals of oncology : official journal of the European Society for Medical Oncology / ESMO 2012;23(2):367-74.
2012: Najim Ameziane; Yavuz Ariyurek; Stefan Dentro; Josephine C Dorsman; Johan J P Gille; Hans Joenje; Lianne Kerkhoven; Daoud Sie; Erik A Sistermans; Bauke Ylstra; Johan P de Winter
Diagnosis of fanconi anemia: mutation analysis by next-generation sequencing.
Anemia 2012;2012():132856.
2012: Nair Lopes; Joana Paredes; José Luis Costa; Bauke Ylstra; Fernando Schmitt
Vitamin D and the mammary gland: a review on its role in normal development and breast cancer.
Breast cancer research : BCR 2012;14(3):211.
2012: Tineke E Buffart; Beatriz Carvalho; Heike Grabsch; Elma Meershoek-Klein Kranenbarg; Marianne Tijssen; Cornelis J H van de Velde; Nicole C T van Grieken; Wessel N van Wieringen; Hendrik Verheul; Bauke Ylstra; Gerrit A Meijer
Losses of chromosome 5q and 14q are associated with favorable clinical outcome of patients with gastric cancer.
The oncologist 2012;17(5):653-62.
2012: Harriet Wikman; Michaela Wrage; Bauke Ylstra; Marc Zapatka; Guido Sauter; Liubov Uslar; Manfred Westphal; Christian Benner; Niclas Detels; Kathrin Eylmann; Markus Glatzel; Ina Hohensee; Dirk Kemming; Katrin Lamszus; Volkmar Müller; Klaus Pantel
Relevance of PTEN loss in brain metastasis formation in breast cancer patients.
Breast cancer research : BCR 2012;14(2):R49.
2012: Mariska Bierkens; Chris J L M Meijer; Peter J F Snijders; Mark A van de Wiel; Wessel N van Wieringen; Saskia M Wilting; Bauke Ylstra; Renske D M Steenbergen
HPV type-related chromosomal profiles in high-grade cervical intraepithelial neoplasia.
BMC cancer 2012;12():36.
2011: R P M Brosens; Tineke E Buffart; Beatriz Carvalho; Miguel A Cuesta; Alexander F Engel; Heike Grabsch; J C Haan; Philip Quirke; Bauke Ylstra; E J T H Belt; Gerrit A Meijer
Deletion of chromosome 4q predicts outcome in stage II colon cancer patients.
Cellular oncology (Dordrecht) 2011;34(3):215-23.
2011: Tjalf E De Boer; Adriana Birlutiu; Zoltán Bochdanovits; M J T N Timmermans; Tjeerd M H Dijkstra; Nico M van Straalen; Bauke Ylstra; Dick Roelofs
Transcriptional plasticity of a soil arthropod across different ecological conditions.
Molecular ecology 2011;20(6):1144-54.
2011: Tineke E Buffart; Melanie Louw; Nicole C T van Grieken; Marloes R Tijssen; Beatriz Carvalho; Bauke Ylstra; Heike Grabsch; Chris J J Mulder; Cornelis J H van de Velde; Schalk W van der Merwe; Gerrit A Meijer
Gastric cancers of Western European and African patients show different patterns of genomic instability.
BMC medical genomics 2011;4():7.
2011: Mark A van de Wiel; Franck Picard; Wessel N van Wieringen; Bauke Ylstra
Preprocessing and downstream analysis of microarray DNA copy number profiles.
Briefings in bioinformatics 2011;12(1):10-21.
2010: Rebecca P M Brosens; Josien C Haan; Beatriz Carvalho; François Rustenburg; Heike Grabsch; Philip Quirke; Alexander F Engel; Miguel A Cuesta; Nicola Maughan; Marcel Flens; Gerrit A Meijer; Bauke Ylstra
Candidate driver genes in focal chromosomal aberrations of stage II colon cancer.
The Journal of pathology 2010;221(4):411-24.
2010: Greetje J Tack; Wieke H M Verbeek; Jolanda M W van de Water; B Mary E von Blomberg; Shama L Bhola; Bauke Ylstra; Chris J J Mulder; Marco W J Schreurs
Phenotypic and genomic analysis of an exceptional case of enteropathy associated T-cell lymphoma.
Leukemia research 2010;34(8):e183-9.
2010: Sabine Spijker; Jeroen S Van Zanten; Simone De Jong; Brenda W J H Penninx; Richard van Dyck; Frans G Zitman; Jan H Smit; Bauke Ylstra; August B Smit; Witte J G Hoogendijk
Stimulated gene expression profiles as a blood marker of major depressive disorder.
Biological psychiatry 2010;68(2):179-86.
2010: B Nota; N M van Straalen; Bauke Ylstra; Dick Roelofs
Gene expression microarray analysis of heat stress in the soil invertebrate Folsomia candida.
Insect molecular biology 2010;19(3):315-22.
2010: Benjamin Nota; Rudo A Verweij; Douwe Molenaar; Bauke Ylstra; Nico M van Straalen; Dick Roelofs
Gene expression analysis reveals a gene set discriminatory to different metals in soil.
Toxicological sciences : an official journal of the Society of Toxicology 2010;115(1):34-40.
2010: Olaf H Temmink; Irene V Bijnsdorp; Henk-Jan Prins; Nienke Losekoot; Auke D Adema; Kees Smid; Richard J Honeywell; Bauke Ylstra; Paul P Eijk; Masakazu Fukushima; Godefridus J Peters
Trifluorothymidine resistance is associated with decreased thymidine kinase and equilibrative nucleoside transporter expression or increased secretory phospholipase A2.
Molecular cancer therapeutics 2010;9(4):1047-57.
2010: Anke H Sillars-Hardebol; Beatriz Carvalho; Meike de Wit; Cindy Postma; Pien M Delis-van Diemen; Sandra Mongera; Bauke Ylstra; Mark A van de Wiel; Gerrit A Meijer; Remond J A Fijneman
Identification of key genes for carcinogenic pathways associated with colorectal adenoma-to-carcinoma progression.
Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2010;31(2):89-96.
2010: Linda van den Berg; Henriette Delemarre-van de Waal; Joan C Han; Bauke Ylstra; Paul Eijk; Maria Nesterova; Peter Heutink; Constantine A Stratakis
Investigation of a patient with a partial trisomy 16q including the fat mass and obesity associated gene (FTO): fine mapping and FTO gene expression study.
American journal of medical genetics. Part A 2010;152A(3):630-7.
2010: Begoña Diosdado; Tineke E Buffart; Russell Watkins; Beatriz Carvalho; Bauke Ylstra; Marianne Tijssen; Anne S Bolijn; Fraser Lewis; Karen Maude; Caroline Verbeke; Iris Nagtegaal; Heike Grabsch; Chris J J Mulder; Phil Quirke; Peter Howdle; Gerrit A Meijer
High-resolution array comparative genomic hybridization in sporadic and celiac disease-related small bowel adenocarcinomas.
Clinical cancer research : an official journal of the American Association for Cancer Research 2010;16(5):1391-401.
2010: R P M Brosens; E J T H Belt; J C Haan; T E Buffart; Beatriz Carvalho; Heike Grabsch; Philip Quirke; Miguel A Cuesta; Alexander F Engel; Bauke Ylstra; Gerrit A Meijer
Deletion of chromosome 4q predicts outcome in stage II colon cancer patients.
Analytical cellular pathology (Amsterdam) 2010;33(2):95-104.
2010: Ilari Scheinin; José A Ferreira; Sakari Knuutila; Gerrit A Meijer; Mark A van de Wiel; Bauke Ylstra
CGHpower: exploring sample size calculations for chromosomal copy number experiments.
BMC bioinformatics 2010;11():331.
2010: Koen Bossers; Bauke Ylstra; Ruud H Brakenhoff; Serge J Smeets; Joost Verhaagen; Mark A van de Wiel
Intensity-based analysis of dual-color gene expression data as an alternative to ratio-based analysis to enhance reproducibility.
BMC genomics 2010;11():112.
2009: M J T N Timmermans; Dick Roelofs; B Nota; Bauke Ylstra; M Holmstrup
Sugar sweet springtails: on the transcriptional response of Folsomia candida (Collembola) to desiccation stress.
Insect molecular biology 2009;18(6):737-46.
2009: Tineke E Buffart; Nicole C T van Grieken; Marloes R Tijssen; Jordy Coffa; Bauke Ylstra; Heike Grabsch; Cornelis J H van de Velde; Beatriz Carvalho; Gerrit A Meijer
High resolution analysis of DNA copy-number aberrations of chromosomes 8, 13, and 20 in gastric cancers.
Virchows Archiv : an international journal of pathology 2009;455(3):213-23.
2009: Dick Roelofs; Thierry K S Janssens; M J T N Timmermans; Benjamin Nota; Janine Mariën; Zoltán Bochdanovits; Bauke Ylstra; Nico M van Straalen
Adaptive differences in gene expression associated with heavy metal tolerance in the soil arthropod Orchesella cincta.
Molecular ecology 2009;18(15):3227-39.
2009: André B P van Kuilenburg; Judith Meijer; Adri N P M Mul; Raoul Hennekam; Jan M N Hoovers; Christine E M de Die-Smulders; Peter Weber; Andrea Capone Mori; Jörgen Bierau; Brian Fowler; Klaus Macke; Jörn Oliver Sass; Rutger Meinsma; Julia B Hennermann; Peter Miny; Lida Zoetekouw; Raymon Vijzelaar; Joost Nicolai; Bauke Ylstra; M Estela Rubio-Gozalbo
Analysis of severely affected patients with dihydropyrimidine dehydrogenase deficiency reveals large intragenic rearrangements of DPYD and a de novo interstitial deletion del(1)(p13.3p21.3).
Human genetics 2009;125(5-6):581-90.
2009: Cindy Postma; M Koopman; Tineke E Buffart; Paul P Eijk; Beatriz Carvalho; G J Peters; Bauke Ylstra; J H J M van Krieken; C J A Punt; Gerrit A Meijer
DNA copy number profiles of primary tumors as predictors of response to chemotherapy in advanced colorectal cancer.
Annals of oncology : official journal of the European Society for Medical Oncology / ESMO 2009;20(6):1048-56.
2009: Mark A van de Wiel; Rebecca Brosens; Paul H C Eilers; Candy Kumps; Gerrit A Meijer; Björn Menten; Erik Sistermans; Frank Speleman; Marieke E Timmerman; Bauke Ylstra
Smoothing waves in array CGH tumor profiles.
Bioinformatics (Oxford, England) 2009;25(9):1099-104.
2009: Michaela Wrage; Salla Ruosaari; Paul P Eijk; Jussuf T Kaifi; Jaakko Hollmén; Emre F Yekebas; Jakob R Izbicki; Ruud H Brakenhoff; Thomas Streichert; Sabine Riethdorf; Markus Glatzel; Bauke Ylstra; Klaus Pantel; Harriet Wikman
Genomic profiles associated with early micrometastasis in lung cancer: relevance of 4q deletion.
Clinical cancer research : an official journal of the American Association for Cancer Research 2009;15(5):1566-74.
2009: Mario A Hermsen; José L Llorente; Jhudit Pérez-Escuredo; Fernando López; Bauke Ylstra; César Alvarez-Marcos; Carlos Suárez
Genome-wide analysis of genetic changes in intestinal-type sinonasal adenocarcinoma.
Head & neck 2009;31(3):290-7.
2009: Joost Oudejans; Wessel N van Wieringen; Serge J Smeets; Marloes R Tijssen; Sjoerd J Vosse; Chris J L M Meijer; Gerrit A Meijer; Mark A van de Wiel; Bauke Ylstra
Identification of genes putatively involved in the pathogenesis of diffuse large B-cell lymphomas by integrative genomics.
Genes, chromosomes & cancer 2009;48(3):250-60.
2009: Hedy Vékony; René Leemans; Bauke Ylstra; Gerrit A Meijer; Isaäc van der Waal; Elisabeth Bloemena
Salivary gland carcinosarcoma: oligonucleotide array CGH reveals similar genomic profiles in epithelial and mesenchymal components.
Oral oncology 2009;45(3):259-65.
2009: Saskia M Wilting; Renske D M Steenbergen; Marloes R Tijssen; Wessel N van Wieringen; Theo J M Helmerhorst; Folkert J van Kemenade; Maaike C G Bleeker; Mark A van de Wiel; Beatriz Carvalho; Gerrit A Meijer; Bauke Ylstra; Chris J L M Meijer; Peter J F Snijders
Chromosomal signatures of a subset of high-grade premalignant cervical lesions closely resemble invasive carcinomas.
Cancer research 2009;69(2):647-55.
2009: José L Costa; Paul P Eijk; Mark A van de Wiel; Derk ten Berge; Fernando Schmitt; Carmen J Narvaez; JoEllen Welsh; Bauke Ylstra
Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down.
BMC genomics 2009;10():499.
2009: Serge J Smeets; Ruud H Brakenhoff; Bauke Ylstra; Wessel N van Wieringen; Mark A van de Wiel; René Leemans; Boudewijn J M Braakhuis
Genetic classification of oral and oropharyngeal carcinomas identifies subgroups with a different prognosis.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2009;31(4):291-300.
2009: Tineke E Buffart; Marloes R Tijssen; Jamila El-Bchiri; Alex Duval; Mark A van de Wiel; Bauke Ylstra; Gerrit A Meijer; Beatriz Carvalho
NMD inhibition fails to identify tumour suppressor genes in microsatellite stable gastric cancer cell lines.
BMC medical genomics 2009;2():39.
2009: Saskia M Wilting; Serge J Smeets; Peter J F Snijders; Wessel N van Wieringen; Mark A van de Wiel; Gerrit A Meijer; Bauke Ylstra; René Leemans; Chris J L M Meijer; Ruud H Brakenhoff; Boudewijn J M Braakhuis; Renske D M Steenbergen
Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck.
BMC medical genomics 2009;2():32.
2009: Benjamin Nota; Mirte Bosse; Bauke Ylstra; Nico M van Straalen; Dick Roelofs
Transcriptomics reveals extensive inducible biotransformation in the soil-dwelling invertebrate Folsomia candida exposed to phenanthrene.
BMC genomics 2009;10():236.
2008: Benjamin Nota; M J T N Timmermans; Oscar Franken; Kora Montagne-Wajer; Janine Mariën; Muriel de Boer; Tjalf E De Boer; Bauke Ylstra; Nico M van Straalen; Dick Roelofs
Gene expression analysis of collembola in cadmium containing soil.
Environmental science & technology 2008;42(21):8152-7.
2008: Tineke E Buffart; Daniëlle Israeli; Marloes R Tijssen; Sjoerd J Vosse; Alan Mrsić; Gerrit A Meijer; Bauke Ylstra
Across array comparative genomic hybridization: a strategy to reduce reference channel hybridizations.
Genes, chromosomes & cancer 2008;47(11):994-1004.
2008: Saskia M Wilting; Jillian de Wilde; Chris J L M Meijer; Johannes Berkhof; Yajun Yi; Wessel N van Wieringen; Boudewijn J M Braakhuis; Gerrit A Meijer; Bauke Ylstra; Peter J F Snijders; Renske D M Steenbergen
Integrated genomic and transcriptional profiling identifies chromosomal loci with altered gene expression in cervical cancer.
Genes, chromosomes & cancer 2008;47(10):890-905.
2008: Ruud Oerlemans; Niels E Franke; Yehuda G Assaraf; Jacqueline Cloos; Ina van Zantwijk; Celia R Berkers; George L Scheffer; Kabir Debipersad; Katharina Vojtekova; Clara Lemos; Joost W van der Heijden; Bauke Ylstra; Godefridus J Peters; Gertjan L Kaspers; Ben A C Dijkmans; Rik J Scheper; Gerrit Jansen
Molecular basis of bortezomib resistance: proteasome subunit beta5 (PSMB5) gene mutation and overexpression of PSMB5 protein.
Blood 2008;112(6):2489-99.
2008: Wessel N van Wieringen; Mark A van de Wiel; Bauke Ylstra
Weighted clustering of called array CGH data.
Biostatistics (Oxford, England) 2008;9(3):484-500.
2008: Kumaresan Ganesan; Tatiana Ivanova; Yonghui Wu; Vikneswari Rajasegaran; Jeanie Wu; Ming Hui Lee; Kun Yu; Sun Young Rha; Hyun Cheol Chung; Bauke Ylstra; Gerrit Meijer; Kon Oi Lian; Heike Grabsch; Patrick Tan
Inhibition of gastric cancer invasion and metastasis by PLA2G2A, a novel beta-catenin/TCF target gene.
Cancer research 2008;68(11):4277-86.
2008: Bradley P Coe; Calum MacAulay; Wan L Lam; Bauke Ylstra; Beatriz Carvalho; Gerrit A Meijer
Comment re: a comparison of DNA copy number profiling platforms.
Cancer research 2008;68(10):4010; author reply 4010.
2008: Marie S Hasemann; Inge Damgaard; Mikkel Bruhn Schuster; Kim Theilgaard-Mönch; Annette B Sørensen; Alan Mrsic; Thijs Krugers; Bauke Ylstra; Finn Skou Pedersen; Claus Nerlov; Bo T Porse
Mutation of C/EBPalpha predisposes to the development of myeloid leukemia in a retroviral insertional mutagenesis screen.
Blood 2008;111(8):4309-21.
2008: José Luis Costa; Gerrit Meijer; Bauke Ylstra; Carlos Caldas
Array comparative genomic hybridization copy number profiling: a new tool for translational research in solid malignancies.
Seminars in radiation oncology 2008;18(2):98-104.
2008: Lee E Finlan; Duncan Sproul; Inga Thomson; Shelagh Boyle; Elizabeth Kerr; Paul Perry; Bauke Ylstra; Jonathan R Chubb; Wendy A Bickmore
Recruitment to the nuclear periphery can alter expression of genes in human cells.
PLoS genetics 2008;4(3):e1000039.
2008: Jillian de Wilde; Saskia M Wilting; Chris J L M Meijer; Mark A van de Wiel; Bauke Ylstra; Peter J F Snijders; Renske D M Steenbergen
Gene expression profiling to identify markers associated with deregulated hTERT in HPV-transformed keratinocytes and cervical cancer.
International journal of cancer. Journal international du cancer 2008;122(4):877-88.
2008: Marcel Kool; Jan Koster; Jens Bunt; Nancy E Hasselt; Arjan Lakeman; Peter G van Sluis; Dirk Troost; Netteke Schouten-van Meeteren; Huib N Caron; Jacqueline Cloos; Alan Mrsić; Bauke Ylstra; Wieslawa Grajkowska; Wolfgang Hartmann; Torsten Pietsch; David Ellison; Steven C Clifford; Rogier Versteeg
Integrated genomics identifies five medulloblastoma subtypes with distinct genetic profiles, pathway signatures and clinicopathological features.
PloS one 2008;3(8):e3088.
2008: Attie T J I Go; Allerdien Visser; Marie Van Dijk; Monique A M Mulders; Paul Eijk; Bauke Ylstra; Marinus A Blankenstein; John M G van Vugt; Cees B M Oudejans
A novel method to identify syncytiotrophoblast-derived RNA products representative of trisomy 21 placental RNA in maternal plasma.
Methods in molecular biology (Clifton, N.J.) 2008;444():291-302.
2008: Mariëlle I Gallegos-Ruiz; Karijn Floor; Paul Roepman; José A Rodriguez; Gerrit A Meijer; Wolter J Mooi; Ewa Jassem; Jacek Niklinski; Thomas Muley; nico van zandwijk; Egbert F Smit; Kristin Beebe; Len Neckers; Bauke Ylstra; Giuseppe Giaccone
Integration of gene dosage and gene expression in non-small cell lung cancer, identification of HSP90 as potential target.
PloS one 2008;3(3):e0001722.
2007: Hedy Vékony; Bauke Ylstra; Saskia M Wilting; Gerrit A Meijer; Mark A van de Wiel; René Leemans; Isaäc van der Waal; Elisabeth Bloemena
DNA copy number gains at loci of growth factors and their receptors in salivary gland adenoid cystic carcinoma.
Clinical cancer research : an official journal of the American Association for Cancer Research 2007;13(11):3133-9.
2007: Anna L Paterson; Jessica C M Pole; Katherine A Blood; Maria J Garcia; Susanna L Cooke; Andrew E Teschendorff; Yanzhong Wang; Suet-Feung Chin; Bauke Ylstra; Carlos Caldas; Paul A W Edwards
Co-amplification of 8p12 and 11q13 in breast cancers is not the result of a single genomic event.
Genes, chromosomes & cancer 2007;46(5):427-39.
2007: Bradley P Coe; Bauke Ylstra; Beatriz Carvalho; Gerrit A Meijer; Calum MacAulay; Wan L Lam
Resolving the resolution of array CGH.
Genomics 2007;89(5):647-53.
2007: Mark A van de Wiel; Kyung In Kim; Sjoerd J Vosse; Wessel N van Wieringen; Saskia M Wilting; Bauke Ylstra
CGHcall: calling aberrations for array CGH tumor profiles.
Bioinformatics (Oxford, England) 2007;23(7):892-4.
2007: K Jong; Elena Marchiori; Aad W van der Vaart; Suet-Feung Chin; Beatriz Carvalho; Marloes R Tijssen; Paul P Eijk; Paul van den IJssel; Heike Grabsch; Philip Quirke; Joost Oudejans; Gerrit A Meijer; C Caldas; Bauke Ylstra
Cross-platform array comparative genomic hybridization meta-analysis separates hematopoietic and mesenchymal from epithelial tumors.
Oncogene 2007;26(10):1499-506.
2007: Wessel N van Wieringen; Mark A van de Wiel; Bauke Ylstra
Normalized, segmented or called aCGH data?
Cancer informatics 2007;3():321-7.
2007: Paul van den Ijssel; Bauke Ylstra
Oligonucleotide array comparative genomic hybridization.
Methods in molecular biology (Clifton, N.J.) 2007;396():207-21.
2007: Suet-Feung Chin; Andrew E Teschendorff; John C Marioni; Yanzhong Wang; Nuno Barbosa-Morais; Natalie P Thorne; Jose L Costa; Sarah Elizabeth Pinder; Mark A van de Wiel; Andrew Green; Ian O Ellis; Peggy L Porter; Simon Tavaré; James D Brenton; Bauke Ylstra; Carlos Caldas
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.
Genome biology 2007;8(10):R215.
2007: Tineke E Buffart; Beatriz Carvalho; Thomas Mons; Rui M Reis; Cátia Moutinho; Paula Silva; Nicole C T van Grieken; Michael Vieth; Manfred Stolte; Cornelis J H van de Velde; Evelin Schrock; Anja Matthaei; Bauke Ylstra; Fátima Carneiro; Gerrit A Meijer
DNA copy number profiles of gastric cancer precursor lesions.
BMC genomics 2007;8():345.
2007: Tineke E Buffart; Marloes R Tijssen; Thijs Krugers; Beatriz Carvalho; Serge J Smeets; Ruud H Brakenhoff; Heike Grabsch; Gerrit A Meijer; Henry B Sadowski; Bauke Ylstra
DNA quality assessment for array CGH by isothermal whole genome amplification.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2007;29(4):351-9.
2007: Mariëlle I Gallegos-Ruiz; Hester van Cruijsen; Egbert F Smit; Katrien Grunberg; Gerrit A Meijer; Jose A Rodriguez; Bauke Ylstra; Giuseppe Giaccone
Genetic heterogeneity in patients with multiple neoplastic lung lesions: a report of three cases.
Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2007;2(1):12-21.
2007: Tineke E Buffart; Beatriz Carvalho; E Hopmans; V Brehm; Elma Klein Kranenbarg; T B M Schaaij-Visser; Paul P Eijk; Nicole C T van Grieken; Bauke Ylstra; Cornelis J H van de Velde; Gerrit A Meijer
Gastric cancers in young and elderly patients show different genomic profiles.
The Journal of pathology 2007;211(1):45-51.
2007: Jettie J F Muris; Bauke Ylstra; Saskia A G M Cillessen; Gert Ossenkoppele; Johanna C Kluin-Nelemans; Paul P Eijk; B Nota; Marloes R Tijssen; Wim P H de Boer; Mark A van de Wiel; Paul van den IJssel; P Jansen; PC de Bruin; J H J M van Krieken; Gerrit A Meijer; C J L M Meijer; Joost Oudejans
Profiling of apoptosis genes allows for clinical stratification of primary nodal diffuse large B-cell lymphomas.
British journal of haematology 2007;136(1):38-47.
2006: Boudewijn J M Braakhuis; A Senft; Remco de Bree; J de Vries; Bauke Ylstra; Jacqueline Cloos; Dirk J Kuik; René Leemans; Ruud H Brakenhoff
Expression profiling and prediction of distant metastases in head and neck squamous cell carcinoma.
Journal of clinical pathology 2006;59(12):1254-60.
2006: Christopher C Benz; Vita Fedele; Fan Xu; Bauke Ylstra; David Ginzinger; Mamie Yu; Dan Moore; Rayna Kneuper Hall; Daynna J Wolff; Mary L Disis; Serenella Eppenberger-Castori; Urs Eppenberger; Francesco Schittulli; Stefania Tommasi; angelo paradiso; Gary K Scott; Donna G Albertson
Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers.
Genes, chromosomes & cancer 2006;45(11):983-94.
2006: Jildau Bouwman; Sabine Spijker; D Schut; B Wächtler; Bauke Ylstra; August B Smit; Matthijs Verhage
Reduced expression of neuropeptide genes in a genome-wide screen of a secretion-deficient mouse.
Journal of neurochemistry 2006;99(1):84-96.
2006: Wessel N van Wieringen; Jeroen A M Belien; Sjoerd J Vosse; Eskeatnaf M Achame; Bauke Ylstra
ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data.
Bioinformatics (Oxford, England) 2006;22(15):1919-20.
2006: Saskia M Wilting; Peter J F Snijders; Gerrit A Meijer; Bauke Ylstra; Paul van den IJssel; Antoine M Snijders; Donna G Albertson; Jordy Coffa; Jan P Schouten; Mark A van de Wiel; C J L M Meijer; Renske D M Steenbergen
Increased gene copy numbers at chromosome 20q are frequent in both squamous cell carcinomas and adenocarcinomas of the cervix.
The Journal of pathology 2006;209(2):220-30.
2006: Serge J Smeets; Boudewijn J M Braakhuis; S Abbas; Peter J F Snijders; Bauke Ylstra; Mark A van de Wiel; Gerrit A Meijer; René Leemans; Ruud H Brakenhoff
Genome-wide DNA copy number alterations in head and neck squamous cell carcinomas with or without oncogene-expressing human papillomavirus.
Oncogene 2006;25(17):2558-64.
2006: Jacqueline Cloos; Wim P H de Boer; Mireille H J Snel; Paul van den IJssel; Bauke Ylstra; René Leemans; Ruud H Brakenhoff; Boudewijn J M Braakhuis
Microarray analysis of bleomycin-exposed lymphoblastoid cells for identifying cancer susceptibility genes.
Molecular cancer research : MCR 2006;4(2):71-7.
2006: Beatriz Carvalho; Tineke E Buffart; Rui M Reis; Thomas Mons; Cátia Moutinho; Paula Silva; Nicole C T van Grieken; Heike Grabsch; Cornelis J H van de Velde; Bauke Ylstra; Gerrit A Meijer; Fátima Carneiro
Mixed gastric carcinomas show similar chromosomal aberrations in both their diffuse and glandular components.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2006;28(5-6):283-94.
2006: Kees Smid; André Bergman; Paul P Eijk; Gijsbert Veerman; V W T Ruiz van Haperen; Paul van den IJssel; Bauke Ylstra; Godefridus J Peters
Micro-array analysis of resistance for gemcitabine results in increased expression of ribonucleotide reductase subunits.
Nucleosides, nucleotides & nucleic acids 2006;25(9-11):1001-7.
2006: Jane Fridlyand; Antoine M Snijders; Bauke Ylstra; Hua Li; Adam B Olshen; Richard Segraves; Shanaz H Dairkee; Taku Tokuyasu; Britt-Marie Ljung; Ajay N Jain; Jane McLennan; John Ziegler; Koei Chin; Sandy Devries; Heidi Feiler; Joe Gray; Frederic M Waldman; Daniel Pinkel; Donna G Albertson
Breast tumor copy number aberration phenotypes and genomic instability.
BMC cancer 2006;6():96.
2006: Bauke Ylstra; Paul van den IJssel; Beatriz Carvalho; Ruud H Brakenhoff; Gerrit A Meijer
BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH).
Nucleic acids research 2006;34(2):445-50.
2005: Mark A van de Wiel; Jose L Costa; Kees Smid; Cees B M Oudejans; André Bergman; Gerrit A Meijer; Godefridus J Peters; Bauke Ylstra
Expression microarray analysis and oligo array comparative genomic hybridization of acquired gemcitabine resistance in mouse colon reveals selection for chromosomal aberrations.
Cancer research 2005;65(22):10208-13.
2005: André Bergman; Paul P Eijk; Veronique Ruiz van Haperen; Kees Smid; Gijsbert Veerman; Isabelle Hubeek; Paul van den IJssel; Bauke Ylstra; Godefridus J Peters
In vivo induction of resistance to gemcitabine results in increased expression of ribonucleotide reductase subunit M1 as the major determinant.
Cancer research 2005;65(20):9510-6.
2005: Marco W J Schreurs; Mario A J A Hermsen; Ramon I Klein Geltink; Kirsten B J Scholten; Antoinette A T P Brink; Esther W M Kueter; Marloes R Tijssen; Chris J L M Meijer; Bauke Ylstra; Gerrit A Meijer; Erik Hooijberg
Genomic stability and functional activity may be lost in telomerase-transduced human CD8+ T lymphocytes.
Blood 2005;106(8):2663-70.
2005: Mark A van de Wiel; Serge J Smeets; Ruud H Brakenhoff; Bauke Ylstra
CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data.
Bioinformatics (Oxford, England) 2005;21(14):3193-4.
2005: Mario A J A Hermsen; Marloes R Tijssen; Ines Hernando Acero; Gerrit A Meijer; Bauke Ylstra; Joaquín Fernández Toral
High resolution microarray CGH and MLPA analysis for improved genotype/phenotype evaluation of two childhood genetic disorder cases: ring chromosome 19 and partial duplication 2q.
European journal of medical genetics 2005;48(3):310-8.
2005: Henk P J Buermans; Everaldo M Redout; Anja E Schiel; René J P Musters; Marian J Zuidwijk; Paul P Eijk; Cornelis Van Hardeveld; Soemini Kasanmoentalib; Frans C Visser; Bauke Ylstra; Warner S Simonides
Microarray analysis reveals pivotal divergent mRNA expression profiles early in the development of either compensated ventricular hypertrophy or heart failure.
Physiological genomics 2005;21(3):314-23.
2005: Paul van den IJssel; Marloes R Tijssen; Suet-Feung Chin; Paul P Eijk; Beatriz Carvalho; Erik Hopmans; Henne Holstege; Dhinoth Kumar Bangarusamy; Jos Jonkers; Gerrit A Meijer; Carlos Caldas; Bauke Ylstra
Human and mouse oligonucleotide-based array CGH.
Nucleic acids research 2005;33(22):e192.
2005: Tineke E Buffart; Jordy Coffa; Mario A J A Hermsen; Beatriz Carvalho; J R M van der Sijp; Bauke Ylstra; Gerard Pals; Jan P Schouten; Gerrit A Meijer
DNA copy number changes at 8q11-24 in metastasized colorectal cancer.
Cellular oncology : the official journal of the International Society for Cellular Oncology 2005;27(1):57-65.
2004: Kees Jong; Elena Marchiori; Gerrit Meijer; A V D Vaart; Bauke Ylstra
Breakpoint identification and smoothing of array comparative genomic hybridization data.
Bioinformatics (Oxford, England) 2004;20(18):3636-7.
2004: Beatriz Carvalho; E Ouwerkerk; Gerrit A Meijer; Bauke Ylstra
High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides.
Journal of clinical pathology 2004;57(6):644-6.
2003: Janneke Weiss; Antoine M Snijders; Ernst J Kuipers; Bauke Ylstra; Daniel Pinkel; S G M Meuwissen; Paulus van Diest; Donna G Albertson; Gerrit A Meijer
Determination of amplicon boundaries at 20q13.2 in tissue samples of human gastric adenocarcinomas by high-resolution microarray comparative genomic hybridization.
The Journal of pathology 2003;200(3):320-6.
2003: Ami S Bhatt; Toshi Takeuchi; Bauke Ylstra; David Ginzinger; Donna Albertson; Marc Shuman; Charles S Craik
Quantitation of membrane type serine protease 1 (MT-SP1) in transformed and normal cells.
Biological chemistry 2003;384(2):257-66.
2002: Richard M Neve; Bauke Ylstra; Chuan-Hsiung Chang; Donna G Albertson; Christopher C Benz
ErbB2 activation of ESX gene expression.
Oncogene 2002;21(24):3934-8.
2001: Antoine M Snijders; N Nowak; Richard Segraves; S Blackwood; N Brown; J Conroy; G Hamilton; A K Hindle; Bing Huey; K Kimura; S Law; Kenneth Myambo; J Palmer; Bauke Ylstra; J P Yue; Joe Gray; Ajay N Jain; Daniel Pinkel; Donna G Albertson
Assembly of microarrays for genome-wide measurement of DNA copy number.
Nature genetics 2001;29(3):263-4.
2001: Colin Collins; Stanislav Volik; David Kowbel; David Ginzinger; Bauke Ylstra; T Cloutier; Trevor L Hawkins; Paul Predki; C Martin; M Wernick; Wen-Lin Kuo; ARTHUR S ALBERTS; Joe Gray
Comprehensive genome sequence analysis of a breast cancer amplicon.
Genome research 2001;11(6):1034-42.
2000: Donna G Albertson; Bauke Ylstra; Richard Segraves; Colin Collins; Shanaz H Dairkee; David Kowbel; Wen-Lin Kuo; Joe Gray; Daniel Pinkel
Quantitative mapping of amplicon structure by array CGH identifies CYP24 as a candidate oncogene.
Nature genetics 2000;25(2):144-6.