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Ali Brivanlou

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Mohammad Zeeshan Ozair; Aryeh Warmflash; Joanna Ela Krzyspiak; Scott A Noggle; Ali H Brivanlou
SMAD7 directly converts human embryonic stem cells to telencephalic fate by a default mechanism.
Aryeh Warmflash; Eric D Siggia; Ali H Brivanlou
Signaling dynamics and embryonic development.
Brigitte L Arduini; Ali H Brivanlou
Modulation of FOXD3 activity in human embryonic stem cells directs pluripotency and paraxial mesoderm fates.

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All Publications

2013: Mohammad Zeeshan Ozair; Aryeh Warmflash; Joanna Ela Krzyspiak; Scott A Noggle; Ali H Brivanlou
SMAD7 directly converts human embryonic stem cells to telencephalic fate by a default mechanism.
Stem cells (Dayton, Ohio) 2013;31(1):35-47.
2012: Aryeh Warmflash; Eric D Siggia; Ali H Brivanlou
Signaling dynamics and embryonic development.
Cell cycle (Georgetown, Tex.) 2012;11(19):3529-30.
2012: Brigitte L Arduini; Ali H Brivanlou
Modulation of FOXD3 activity in human embryonic stem cells directs pluripotency and paraxial mesoderm fates.
Stem cells (Dayton, Ohio) 2012;30(10):2188-98.
2012: Aryeh Warmflash; Brigitte L Arduini; Ali H Brivanlou
The molecular circuitry underlying pluripotency in embryonic stem cells.
Wiley interdisciplinary reviews. Systems biology and medicine 2012;4(5):443-56.
2012: Hua Gao; Ali H Brivanlou; Edi Brogi; Goutam Chakraborty; Markus Decker; Ai Ping Lee-Lim; Qianxing Mo; Ronglai Shen; Alin Vonica; Filippo G Giancotti
The BMP inhibitor Coco reactivates breast cancer cells at lung metastatic sites.
Cell 2012;150(4):764-79.
2012: Aryeh Warmflash; Qixiang Zhang; Eric D Siggia; Benoit Sorre; Alin Vonica; Ali H Brivanlou
Dynamics of TGF-β signaling reveal adaptive and pulsatile behaviors reflected in the nuclear localization of transcription factor Smad4.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(28):E1947-56.
2011: Alin Vonica; Alessandro Rosa; Brigitte L Arduini; Ali H Brivanlou
APOBEC2, a selective inhibitor of TGFβ signaling, regulates left-right axis specification during early embryogenesis.
Developmental biology 2011;350(1):13-23.
2011: Alessandro Rosa; Ali H Brivanlou
A regulatory circuitry comprised of miR-302 and the transcription factors OCT4 and NR2F2 regulates human embryonic stem cell differentiation.
The EMBO journal 2011;30(2):237-48.
2010: Alessandro Rosa; Ali H Brivanlou
Synthetic mRNAs: powerful tools for reprogramming and differentiation of human cells.
Cell stem cell 2010;7(5):549-50.
2010: Yutaka Shimomura; Dritan Agalliu; Alin Vonica; Victor Luria; Muhammad Wajid; Alessandra Baumer; Serena Belli; Lynn Petukhova; Albert Schinzel; Ali H Brivanlou; Ben A Barres; Angela M Christiano
APCDD1 is a novel Wnt inhibitor mutated in hereditary hypotrichosis simplex.
Nature 2010;464(7291):1043-7.
2009: Elisa Di Pasquale; Ali H Brivanlou
Bone morphogenetic protein 15 (BMP15) acts as a BMP and Wnt inhibitor during early embryogenesis.
The Journal of biological chemistry 2009;284(38):26127-36.
2009: Arnaud Lacoste; Frada Berenshteyn; Ali H Brivanlou
An efficient and reversible transposable system for gene delivery and lineage-specific differentiation in human embryonic stem cells.
Cell stem cell 2009;5(3):332-42.
2009: Paul Francois; Alin Vonica; Ali H Brivanlou; Eric D Siggia
Scaling of BMP gradients in Xenopus embryos.
Nature 2009;461(7260):E1; discussion E2.
2009: Alessandro Rosa; Francesca M Spagnoli; Ali H Brivanlou
The miR-430/427/302 family controls mesendodermal fate specification via species-specific target selection.
Developmental cell 2009;16(4):517-27.
2009: Arnold J Levine; Zachary J Levine; Ali H Brivanlou
GDF3 is a BMP inhibitor that can activate Nodal signaling only at very high doses.
Developmental biology 2009;325(1):43-8.
2008: Francesca M Spagnoli; Ali H Brivanlou
The Gata5 target, TGIF2, defines the pancreatic region by modulating BMP signals within the endoderm.
Development (Cambridge, England) 2008;135(3):451-61.
2007: Arnold J Levine; Ali H Brivanlou
Proposal of a model of mammalian neural induction.
Developmental biology 2007;308(2):247-56.
2007: Alin Vonica; Ali H Brivanlou
The left-right axis is regulated by the interplay of Coco, Xnr1 and derrière in Xenopus embryos.
Developmental biology 2007;303(1):281-94.
2007: Gopal Sapkota; Claudio Alarcón; Francesca M Spagnoli; Ali H Brivanlou; Joan Massagué
Balancing BMP signaling through integrated inputs into the Smad1 linker.
Molecular cell 2007;25(3):441-54.
2007: Oliver Dreesen; Ali H Brivanlou
Signaling pathways in cancer and embryonic stem cells.
Stem cell reviews 2007;3(1):7-17.
2006: Gopal Sapkota; Marie Knockaert; Claudio Alarcón; Ermelinda Montalvo; Ali H Brivanlou; Joan Massagué
Dephosphorylation of the linker regions of Smad1 and Smad2/3 by small C-terminal domain phosphatases has distinct outcomes for bone morphogenetic protein and transforming growth factor-beta pathways.
The Journal of biological chemistry 2006;281(52):40412-9.
2006: Chenbei Chang; Ali H Brivanlou; Richard M Harland
Function of the two Xenopus smad4s in early frog development.
The Journal of biological chemistry 2006;281(41):30794-803.
2006: Marie Knockaert; Gopal Sapkota; Claudio Alarcón; Joan Massagué; Ali H Brivanlou
Unique players in the BMP pathway: small C-terminal domain phosphatases dephosphorylate Smad1 to attenuate BMP signaling.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(32):11940-5.
2006: Daylon James; Scott A Noggle; Tomek Swigut; Ali H Brivanlou
Contribution of human embryonic stem cells to mouse blastocysts.
Developmental biology 2006;295(1):90-102.
2006: Arnold J Levine; Ali H Brivanlou
GDF3 at the crossroads of TGF-beta signaling.
Cell cycle (Georgetown, Tex.) 2006;5(10):1069-73.
2006: Francesca M Spagnoli; Ali H Brivanlou
The RNA-binding protein, Vg1RBP, is required for pancreatic fate specification.
Developmental biology 2006;292(2):442-56.
2006: Alin Vonica; Ali H Brivanlou
An obligatory caravanserai stop on the silk road to neural induction: inhibition of BMP/GDF signaling.
Seminars in cell & developmental biology 2006;17(1):117-32.
2006: Noboru Sato; Ali H Brivanlou
Microarray approach to identify the signaling network responsible for self-renewal of human embryonic stem cells.
Methods in molecular biology (Clifton, N.J.) 2006;331():267-83.
2006: Noboru Sato; Ali H Brivanlou
Manipulation of self-renewal in human embryonic stem cells through a novel pharmacological GSK-3 inhibitor.
Methods in molecular biology (Clifton, N.J.) 2006;331():115-28.
2006: Arnold J Levine; Ali H Brivanlou
GDF3, a BMP inhibitor, regulates cell fate in stem cells and early embryos.
Development (Cambridge, England) 2006;133(2):209-16.
2005: Joanna Wysocka; Tomek Swigut; Thomas A Milne; Yali Dou; Xin Zhang; Al L Burlingame; Robert G Roeder; Ali H Brivanlou; C David Allis
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development.
Cell 2005;121(6):859-72.
2005: Ignacio Muñoz-Sanjuán; Ali H Brivanlou
Induction of ectopic olfactory structures and bone morphogenetic protein inhibition by Rossy, a group XII secreted phospholipase A2.
Molecular and cellular biology 2005;25(9):3608-19.
2005: Tarek A Samad; Anuradha Rebbapragada; Esther Bell; Ying Zhang; Yisrael Sidis; Sung-Jin Jeong; Jason A Campagna; Stephen Perusini; David A Fabrizio; Alan L Schneyer; Herbert Y Lin; Ali H Brivanlou; Liliana Attisano; Clifford J Woolf
DRAGON, a bone morphogenetic protein co-receptor.
The Journal of biological chemistry 2005;280(14):14122-9.
2005: Mario Chamorro; Donald R Schwartz; Alin Vonica; Ali H Brivanlou; Kathleen R Cho; Harold Varmus
FGF-20 and DKK1 are transcriptional targets of beta-catenin and FGF-20 is implicated in cancer and development.
The EMBO journal 2005;24(1):73-84.
2005: Scott A Noggle; Daylon James; Ali H Brivanlou
A molecular basis for human embryonic stem cell pluripotency.
Stem cell reviews 2005;1(2):111-8.
2005: Alexander Sczyrba; Michael Beckstette; Ali H Brivanlou; Robert Giegerich; Curtis R Altmann
XenDB: full length cDNA prediction and cross species mapping in Xenopus laevis.
BMC genomics 2005;6():123.
2005: Francesca M Spagnoli; Ali H Brivanlou
A full menu for stem-cell research.
Genome biology 2005;6(3):311.
2004: Marja Talikka; Giovanni Stefani; Ali H Brivanlou; Kathryn Zimmerman
Characterization of Xenopus Phox2a and Phox2b defines expression domains within the embryonic nervous system and early heart field.
Gene expression patterns : GEP 2004;4(5):601-7.
2004: Simon K Cheng; Felix Olale; Ali H Brivanlou; Alexander F Schier
Lefty blocks a subset of TGFbeta signals by antagonizing EGF-CFC coreceptors.
PLoS biology 2004;2(2):E30.
2004: Noboru Sato; Laurent Meijer; Leandros Skaltsounis; Paul Greengard; Ali H Brivanlou
Maintenance of pluripotency in human and mouse embryonic stem cells through activation of Wnt signaling by a pharmacological GSK-3-specific inhibitor.
Nature medicine 2004;10(1):55-63.
2003: Laurent Meijer; Alexios-Leandros Skaltsounis; Prokopios Magiatis; Panagiotis Polychronopoulos; Marie Knockaert; Maryse Leost; Xiaozhou P Ryan; Claudia Alin Vonica; Ali H Brivanlou; Rana Dajani; Claudia Crovace; Cataldo Tarricone; Andrea Musacchio; S Mark Roe; Laurence H Pearl; Paul Greengard
GSK-3-selective inhibitors derived from Tyrian purple indirubins.
Chemistry & biology 2003;10(12):1255-66.
2003: Noboru Sato; Ignacio Munoz Sanjuan; Michael Heke; Makiko Uchida; Felix Naef; Ali H Brivanlou
Molecular signature of human embryonic stem cells and its comparison with the mouse.
Developmental biology 2003;260(2):404-13.
2003: Ali H Brivanlou; Fred H Gage; Rudolf Jaenisch; Thomas Jessell; Douglas Melton; Janet Rossant
Stem cells. Setting standards for human embryonic stem cells.
Science (New York, N.Y.) 2003;300(5621):913-6.
2003: Esther Bell; Ignacio Muñoz-Sanjuán; Curtis R Altmann; Alin Vonica; Ali H Brivanlou
Cell fate specification and competence by Coco, a maternal BMP, TGFbeta and Wnt inhibitor.
Development (Cambridge, England) 2003;130(7):1381-9.
2003: Chenbei Chang; Bart Eggen; Daniel C Weinstein; Ali H Brivanlou
Regulation of nodal and BMP signaling by tomoregulin-1 (X7365) through novel mechanisms.
Developmental biology 2003;255(1):1-11.
2003: Arnold J Levine; Ignacio Munoz-Sanjuan; Esther Bell; Alison J North; Ali H Brivanlou
Fluorescent labeling of endothelial cells allows in vivo, continuous characterization of the vascular development of Xenopus laevis.
Developmental biology 2003;254(1):50-67.
2003: Simon K Cheng; Felix Olale; James T Bennett; Ali H Brivanlou; Alexander F Schier
EGF-CFC proteins are essential coreceptors for the TGF-beta signals Vg1 and GDF1.
Genes & development 2003;17(1):31-6.
2002: Ignacio Muñoz-Sanjuán; Esther Bell; Curtis R Altmann; Alin Vonica; Ali H Brivanlou
Gene profiling during neural induction in Xenopus laevis: regulation of BMP signaling by post-transcriptional mechanisms and TAB3, a novel TAK1-binding protein.
Development (Cambridge, England) 2002;129(23):5529-40.
2002: Benoit Dubertret; Paris Skourides; David J Norris; Vincent Noireaux; Ali H Brivanlou; Albert Libchaber
In vivo imaging of quantum dots encapsulated in phospholipid micelles.
Science (New York, N.Y.) 2002;298(5599):1759-62.
2002: Jaerang Rho; Curtis R Altmann; Nicholas D Socci; Lubomir Merkov; Nacksung Kim; Hongseob So; Okbok Lee; Masamichi Takami; Ali H Brivanlou; Yongwon Choi
Gene expression profiling of osteoclast differentiation by combined suppression subtractive hybridization (SSH) and cDNA microarray analysis.
DNA and cell biology 2002;21(8):541-9.
2002: Curtis R Altmann; Chenbei Chang; Ignacio Muñoz-Sanjuán; Esther Bell; Michael Heke; Daniel B Rifkin; Ali H Brivanlou
The latent-TGFbeta-binding-protein-1 (LTBP-1) is expressed in the organizer and regulates nodal and activin signaling.
Developmental biology 2002;248(1):118-27.
2002: Ignacio Muñoz-Sanjuán; Ali H Brivanlou
Neural induction, the default model and embryonic stem cells.
Nature reviews. Neuroscience 2002;3(4):271-80.
2002: Ali H Brivanlou; James E Darnell
Signal transduction and the control of gene expression.
Science (New York, N.Y.) 2002;295(5556):813-8.
2001: I E Zohn; Ali H Brivanlou
Expression cloning of Xenopus Os4, an evolutionarily conserved gene, which induces mesoderm and dorsal axis.
Developmental biology 2001;239(1):118-31.
2001: Curtis R Altmann; Esther Bell; Alexander Sczyrba; J Pun; Stefan Bekiranov; Terry Gaasterland; Ali H Brivanlou
Microarray-based analysis of early development in Xenopus laevis.
Developmental biology 2001;236(1):64-75.
2001: Chenbei Chang; D A Holtzman; S Chau; TW Chickering; EA Woolf; LM Holmgren; J Bodorova; DP Gearing; William E Holmes; Ali H Brivanlou
Twisted gastrulation can function as a BMP antagonist.
Nature 2001;410(6827):483-7.
2001: Curtis R Altmann; Ali H Brivanlou
Neural patterning in the vertebrate embryo.
International review of cytology 2001;203():447-82.
1998: Rafael Casellas; Ali H Brivanlou
Xenopus Smad7 inhibits both the activin and BMP pathways and acts as a neural inducer.
Developmental biology 1998;198(1):1-12.