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Shuji Yonei

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Escherichia coli

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Ayaka Hosoki; Takashi Kondo; Takaharu Nomura; Yoshiaki Tabuchi; Akira Tachibana; Ichiro Takasaki; Li-Li Wang; Zheng-Li Wei; Shuji Yonei; Shin-Ichiro Yonekura; Kazunari Hashiguchi; Shiga Hasuike; Qing-Li Zhao; Qiu-Mei Zhang-Akiyama
Mitochondria-targeted superoxide dismutase (SOD2) regulates radiation resistance and radiation stress response in HeLa cells.
U Sanada; Shuji Yonei; Shin-Ichiro Yonekura; Kazunari Hashiguchi; Masahiro Kikuchi; Nobuya Nakamura; Qiu-Mei Zhang-Akiyama
NDX-1 protein hydrolyzes 8-oxo-7, 8-dihydrodeoxyguanosine-5'-diphosphate to sanitize oxidized nucleotides and prevent oxidative stress in Caenorhabditis elegans.
Masaki Hori; Shin-Ichiro Yonekura; Takehiko Nohmi; Petr Gruz; Hiroshi Sugiyama; Shuji Yonei; Qiu-Mei Zhang-Akiyama
Error-Prone Translesion DNA Synthesis by Escherichia coli DNA Polymerase IV (DinB) on Templates Containing 1,2-dihydro-2-oxoadenine.

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All Publications

2012: Ayaka Hosoki; Takashi Kondo; Takaharu Nomura; Yoshiaki Tabuchi; Akira Tachibana; Ichiro Takasaki; Li-Li Wang; Zheng-Li Wei; Shuji Yonei; Shin-Ichiro Yonekura; Kazunari Hashiguchi; Shiga Hasuike; Qing-Li Zhao; Qiu-Mei Zhang-Akiyama
Mitochondria-targeted superoxide dismutase (SOD2) regulates radiation resistance and radiation stress response in HeLa cells.
Journal of radiation research 2012;53(1):58-71.
2011: U Sanada; Shuji Yonei; Shin-Ichiro Yonekura; Kazunari Hashiguchi; Masahiro Kikuchi; Nobuya Nakamura; Qiu-Mei Zhang-Akiyama
NDX-1 protein hydrolyzes 8-oxo-7, 8-dihydrodeoxyguanosine-5'-diphosphate to sanitize oxidized nucleotides and prevent oxidative stress in Caenorhabditis elegans.
Journal of biochemistry 2011;150(6):649-57.
2010: Masaki Hori; Shin-Ichiro Yonekura; Takehiko Nohmi; Petr Gruz; Hiroshi Sugiyama; Shuji Yonei; Qiu-Mei Zhang-Akiyama
Error-Prone Translesion DNA Synthesis by Escherichia coli DNA Polymerase IV (DinB) on Templates Containing 1,2-dihydro-2-oxoadenine.
Journal of nucleic acids 2010;2010():807579.
2009: Hironobu Morinaga; Shin-Ichiro Yonekura; Nobuya Nakamura; Hiroshi Sugiyama; Shuji Yonei; Qiu-Mei Zhang-Akiyama
Purification and characterization of Caenorhabditis elegans NTH, a homolog of human endonuclease III: essential role of N-terminal region.
DNA repair 2009;8(7):844-51.
2009: Qiu-Mei Zhang-Akiyama; Hironobu Morinaga; Masahiro Kikuchi; Shin-Ichiro Yonekura; Hiroshi Sugiyama; Kazuo Yamamoto; Shuji Yonei
KsgA, a 16S rRNA adenine methyltransferase, has a novel DNA glycosylase/AP lyase activity to prevent mutations in Escherichia coli.
Nucleic acids research 2009;37(7):2116-25.
2009: Masashi Takao; Yoshitsugu Oohata; Kengo Kitadokoro; Kumiko Kobayashi; Shigenori Iwai; Akira Yasui; Shuji Yonei; Qiu-Mei Zhang
Human Nei-like protein NEIL3 has AP lyase activity specific for single-stranded DNA and confers oxidative stress resistance in Escherichia coli mutant.
Genes to cells : devoted to molecular & cellular mechanisms 2009;14(2):261-70.
2009: Shin-Ichiro Yonekura; Nobuya Nakamura; Shuji Yonei; Qiu-Mei Zhang-Akiyama
Generation, biological consequences and repair mechanisms of cytosine deamination in DNA.
Journal of radiation research 2009;50(1):19-26.
2008: Nobuya Nakamura; Hironobu Morinaga; Masahiro Kikuchi; Shin-Ichiro Yonekura; Naoaki Ishii; Kazuo Yamamoto; Shuji Yonei; Qiu-Mei Zhang
Cloning and characterization of uracil-DNA glycosylase and the biological consequences of the loss of its function in the nematode Caenorhabditis elegans.
Mutagenesis 2008;23(5):407-13.
2007: Shin-Ichiro Yonekura; Nobuya Nakamura; Takashi Doi; Hiroshi Sugiyama; Kazuo Yamamoto; Shuji Yonei; Qiu-Mei Zhang
Recombinant Schizosaccharomyces pombe Nth1 protein exhibits DNA glycosylase activities for 8-oxo-7,8-dihydroguanine and thymine residues oxidized in the methyl group.
Journal of radiation research 2007;48(5):417-24.
2006: G Jin; Qiu-Mei Zhang; Yutaka Satou; Nori Satoh; H Kasai; Shuji Yonei
Cloning and characterization of an ascidian homolog of the human 8-oxoguanine DNA glycosylase (Ogg1) that is involved in the repair of 8-oxo-7,8-dihydroguanine in DNA in Ciona intestinalis.
International journal of radiation biology 2006;82(4):241-50.
2006: Izumi Miyabe; Takashi Morishita; Takashi Hishida; Shuji Yonei; Hideo Shinagawa
Rhp51-dependent recombination intermediates that do not generate checkpoint signal are accumulated in Schizosaccharomyces pombe rad60 and smc5/6 mutants after release from replication arrest.
Molecular and cellular biology 2006;26(1):343-53.
2005: Takashi Doi; Shin-Ichiro Yonekura; Keizo Tano; Shinji Yasuhira; Shuji Yonei; Qiu-Mei Zhang
The Shizosaccharomyces pombe homolog (SpMYH) of the Escherichia coli MutY is required for removal of guanine from 8-oxoguanine/guanine mispairs to prevent G:C to C:G transversions.
Journal of radiation research 2005;46(2):205-14.
2005: Qiu-Mei Zhang; Nobuya Nakamura; Shin-Ichiro Yonekura; Shuji Yonei; Qui-Mei Zhang; Nobuya Nakamura; Shin-Ichiro Yonekura; Shuji Yonei
[Biological consequences and base excision repair mechanisms of oxidative base damage in DNA].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2005;50(4):322-9.
2005: P W Chang; Qiu-Mei Zhang; K Takatori; A Tachibana; Shuji Yonei
Increased sensitivity to sparsely ionizing radiation due to excessive base excision in clustered DNA damage sites in Escherichia coli.
International journal of radiation biology 2005;81(2):115-23.
2005: Qiu-Mei Zhang; Shin-Ichiro Yonekura; Masashi Takao; Akira Yasui; Hiroshi Sugiyama; Shuji Yonei
DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the hNEIL1 and hNTH1 enzymes in human cells.
DNA repair 2005;4(1):71-9.
2003: Hideki Hirose; Takehisa Nakahara; Qiu-Mei Zhang; Shuji Yonei; Junji Miyakoshi
Static magnetic field with a strong magnetic field gradient (41.7 T/m) induces c-Jun expression in HL-60 cells.
In vitro cellular & developmental biology. Animal 2003;39(8-9):348-52.
2003: Maki Takata-Yahiro; Yoshito Fujii; Jorge Fraga Nodarse; Mohammed Rafiqul Islam; Shinya Oda; Qiu-Mei Zhang; Shuji Yonei; Michio Nakamura
A novel GT-mismatch binding protein that recognizes strict DNA sequences with high affinity.
The Tohoku journal of experimental medicine 2003;200(4):211-29.
2003: Qiu-Mei Zhang; K Hashiguchi; Katsuhito Kino; Hiroshi Sugiyama; Shuji Yonei
Ntg1 and Ntg2 proteins as 5-formyluracil-DNA glycosylases/AP lyases in Saccharomyces cerevisiae.
International journal of radiation biology 2003;79(5):341-9.
2003: Qiu-Mei Zhang; M Tokiwa; T Doi; Takehisa Nakahara; P-W Chang; N Nakamura; M Hori; Junji Miyakoshi; Shuji Yonei
Strong static magnetic field and the induction of mutations through elevated production of reactive oxygen species in Escherichia coli soxR.
International journal of radiation biology 2003;79(4):281-6.
2003: Masaki Hori; Shuji Yonei; Hiroshi Sugiyama; Katsuhito Kino; Kazuo Yamamoto; Qiu-Mei Zhang
Identification of high excision capacity for 5-hydroxymethyluracil mispaired with guanine in DNA of Escherichia coli MutM, Nei and Nth DNA glycosylases.
Nucleic acids research 2003;31(4):1191-6.
2002: Masashi Takao; Shin-ichiro Kanno; Kumiko Kobayashi; Qiu-Mei Zhang; Shuji Yonei; Gijsbertus T J van der Horst; Akira Yasui
A back-up glycosylase in Nth1 knock-out mice is a functional Nei (endonuclease VIII) homologue.
The Journal of biological chemistry 2002;277(44):42205-13.
2002: Shuji Yonei; Qiu-Mei Zhang
[Biological effects of low dose radiation and adaptive responses in mammalian cells].
Nihon Hoshasen Gijutsu Gakkai zasshi 2002;58(10):1328-34.
2002: Izumi Miyabe; Qiu-Mei Zhang; Katsuhito Kino; Hiroshi Sugiyama; Masashi Takao; Akira Yasui; Shuji Yonei
Identification of 5-formyluracil DNA glycosylase activity of human hNTH1 protein.
Nucleic acids research 2002;30(15):3443-8.
2002: K Hashiguchi; Qiu-Mei Zhang; Hiroshi Sugiyama; S Ikeda; Shuji Yonei
Characterization of 2-hydroxyadenine DNA glycosylase activity of Escherichia coli MutY protein.
International journal of radiation biology 2002;78(7):585-92.
2001: Y Matsumoto; Qiu-Mei Zhang; Masashi Takao; Akira Yasui; Shuji Yonei
Escherichia coli Nth and human hNTH1 DNA glycosylases are involved in removal of 8-oxoguanine from 8-oxoguanine/guanine mispairs in DNA.
Nucleic acids research 2001;29(9):1975-81.
2001: Izumi Miyabe; Qiu-Mei Zhang; Hiroshi Sugiyama; Katsuhito Kino; Shuji Yonei
Mutagenic effects of 5-formyluracil on a plasmid vector during replication in Escherichia coli.
International journal of radiation biology 2001;77(1):53-8.
2000: Qiu-Mei Zhang; Izumi Miyabe; Y Matsumoto; Katsuhito Kino; Hiroshi Sugiyama; Shuji Yonei
Identification of repair enzymes for 5-formyluracil in DNA. Nth, Nei, and MutM proteins of Escherichia coli.
The Journal of biological chemistry 2000;275(45):35471-7.
2000: T Nakahara; Qiu-Mei Zhang; K Hashiguchi; Shuji Yonei
Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA.
Nucleic acids research 2000;28(13):2551-6.
2000: Izumi Miyabe; Qiu-Mei Zhang; Y Kano; Shuji Yonei
Histone-like protein HU is required for recA gene-dependent DNA repair and SOS induction pathways in UV-irradiated Escherichia coli.
International journal of radiation biology 2000;76(1):43-9.
1999: Masashi Takao; Qiu-Mei Zhang; Shuji Yonei; Akira Yasui
Differential subcellular localization of human MutY homolog (hMYH) and the functional activity of adenine:8-oxoguanine DNA glycosylase.
Nucleic acids research 1999;27(18):3638-44.
1999: Qiu-Mei Zhang; Hiroshi Sugiyama; Izumi Miyabe; S Matsuda; Katsuhito Kino; Isao Saito; Shuji Yonei
Replication in vitro and cleavage by restriction endonuclease of 5-formyluracil- and 5-hydroxymethyluracil-containing oligonucleotides.
International journal of radiation biology 1999;75(1):59-65.
1998: Qiu-Mei Zhang; N Ishikawa; T Nakahara; Shuji Yonei
Escherichia coli MutY protein has a guanine-DNA glycosylase that acts on 7,8-dihydro-8-oxoguanine:guanine mispair to prevent spontaneous G:C-->C:G transversions.
Nucleic acids research 1998;26(20):4669-75.
1998: T Takemoto; Qiu-Mei Zhang; Y Matsumoto; S Mito; T Izumi; H Ikehata; Shuji Yonei
3'-blocking damage of DNA as a mutagenic lesion caused by hydrogen peroxide in Escherichia coli.
Journal of radiation research 1998;39(2):137-44.
1998: T Takemoto; Qiu-Mei Zhang; Shuji Yonei
Different mechanisms of thioredoxin in its reduced and oxidized forms in defense against hydrogen peroxide in Escherichia coli.
Free radical biology & medicine 1998;24(4):556-62.
1997: Qiu-Mei Zhang; Hiroshi Sugiyama; Izumi Miyabe; S Matsuda; Isao Saito; Shuji Yonei
Replication of DNA templates containing 5-formyluracil, a major oxidative lesion of thymine in DNA.
Nucleic acids research 1997;25(20):3969-73.
1996: Qiu-Mei Zhang; T Takemoto; S Mito; Shuji Yonei
Induction of repair capacity for oxidatively damaged DNA as a component of peroxide stress response in Escherichia coli.
Journal of radiation research 1996;37(3):171-6.
1995: Qiu-Mei Zhang; J Fujimoto; Shuji Yonei
Enzymatic release of 5-formyluracil by mammalian liver extracts from DNA irradiated with ionizing radiation.
International journal of radiation biology 1995;68(6):603-7.
1993: S Mito; Qiu-Mei Zhang; Shuji Yonei
Isolation and characterization of Escherichia coli strains containing new gene fusions (soi::lacZ) inducible by superoxide radicals.
Journal of bacteriology 1993;175(9):2645-51.
1992: Qiu-Mei Zhang; Shuji Yonei; M Kato
Multiple pathways for repair of oxidative DNA damages caused by X rays and hydrogen peroxide in Escherichia coli.
Radiation research 1992;132(3):334-8.
1992: T Izumi; K Ishizaki; M Ikenaga; Shuji Yonei
A mutant endonuclease IV of Escherichia coli loses the ability to repair lethal DNA damage induced by hydrogen peroxide but not that induced by methyl methanesulfonate.
Journal of bacteriology 1992;174(23):7711-6.
1991: Qiu-Mei Zhang; Shuji Yonei
Induction of manganese-superoxide dismutase by membrane-binding drugs in Escherichia coli.
Journal of bacteriology 1991;173(11):3488-91.
1991: K Tao; Keisuke Makino; Shuji Yonei; A Nakata; H Shinagawa
Purification and characterization of the Escherichia coli OxyR protein, the positive regulator for a hydrogen peroxide-inducible regulon.
Journal of biochemistry 1991;109(2):262-6.
1989: K Tao; Keisuke Makino; Shuji Yonei; A Nakata; H Shinagawa
Molecular cloning and nucleotide sequencing of oxyR, the positive regulatory gene of a regulon for an adaptive response to oxidative stress in Escherichia coli: homologies between OxyR protein and a family of bacterial activator proteins.
Molecular & general genetics : MGG 1989;218(3):371-6.
1987: K Tao; A Noda; Shuji Yonei
The roles of different excision-repair mechanisms in the resistance of Micrococcus luteus to UV and chemical mutagens.
Mutation research 1987;183(3):231-9.