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Yeisoo Yu

Research Profile

Devices

Bacterial Artificial Chromosomes

Living Beings

Oryza sativa

Genes & Molecular Sequences

Concepts & Ideas

Phenomena

Evolution, Molecular

Procedures

Chemicals & Drugs

Anatomy

Plant Chromosomes

Occupations

Genomics

Co-author Network

Publications

TOP 3
Marianyoly Ortiz; Leland S Pierson; Barry M Pryor; Carol Soderlund; Rod A Wing; Yeisoo Yu; Andrea Byrne; Antje Legatzki; Julia W Neilson; William M Nelson; Raina M Maier
Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.
Hyun Jo Koo; Dave Kudrna; Xiaoqiang Ma; Eric T McDowell; Carol Soderlund; Rod A Wing; Zhengzhi Xie; Yeisoo Yu; Anne Descour; Kevin A Greer; Jeremy Kapteyn; Hyeran Kim; David R Gang
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
Jungmin Ha; Brian Abernathy; David Grant; William Nelson; Henry T Nguyen; Randy C Shoemaker; Gary Stacey; Rod A Wing; Xiaolei Wu; Yeisoo Yu; Scott A Jackson
Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.).

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All Publications

2013: Marianyoly Ortiz; Leland S Pierson; Barry M Pryor; Carol Soderlund; Rod A Wing; Yeisoo Yu; Andrea Byrne; Antje Legatzki; Julia W Neilson; William M Nelson; Raina M Maier
Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.
Microbial ecology 2013;65(2):371-83.
2013: Hyun Jo Koo; Dave Kudrna; Xiaoqiang Ma; Eric T McDowell; Carol Soderlund; Rod A Wing; Zhengzhi Xie; Yeisoo Yu; Anne Descour; Kevin A Greer; Jeremy Kapteyn; Hyeran Kim; David R Gang
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
BMC plant biology 2013;13():27.
2012: Jungmin Ha; Brian Abernathy; David Grant; William Nelson; Henry T Nguyen; Randy C Shoemaker; Gary Stacey; Rod A Wing; Xiaolei Wu; Yeisoo Yu; Scott A Jackson
Integration of the Draft Sequence and Physical Map as a Framework for Genomic Research in Soybean (Glycine max (L.) Merr.) and Wild Soybean (Glycine soja Sieb. and Zucc.).
G3 (Bethesda, Md.) 2012;2(3):321-9.
2011: Xiang Song; José L Goicoechea; Jetty S S Ammiraju; Meizhong Luo; Ruifeng He; Jinke Lin; So-Jeong Lee; Nicholas Sisneros; Tom Watts; Dave Kudrna; Wolfgang Golser; Elizabeth Ashley; Kristi Collura; Michele Braidotti; Yeisoo Yu; Luciano M Matzkin; Bryant F McAllister; Therese Ann Markow; Rod A Wing
The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research.
Genetics 2011;187(4):1023-30.
2011: Zhixi Tian; Yeisoo Yu; Feng Lin; Yeisoo Yu; Phillip SanMiguel; Rod A Wing; Susan R McCouch; Jianxin Ma; Scott A Jackson
Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.
BMC genomics 2011;12():142.
2010: Abhijit Sanyal; Jetty S S Ammiraju; Fei Lu; Yeisoo Yu; Teri Rambo; Jennifer Currie; Kristi Kollura; Hye-Ran Kim; Jinfeng Chen; Jianxin Ma; Phillip San Miguel; Chen Mingsheng; Rod A Wing; Scott A Jackson
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
Molecular biology and evolution 2010;27(11):2487-506.
2010: Bonnie L Hurwitz; Dave Kudrna; Yeisoo Yu; Aswathy Sebastian; Andrea Zuccolo; Scott A Jackson; Doreen Ware; Rod A Wing; Lincoln Stein
Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.
The Plant journal : for cell and molecular biology 2010;63(6):990-1003.
2010: Liangying Dai; Jun Wu; Xunbo Li; Xuejun Wang; Xionglun Liu; Chatchawan Jantasuriyarat; Dave Kudrna; Yeisoo Yu; Rod A Wing; Bin Han; Bo Zhou; Guo-Liang Wang
Genomic structure and evolution of the Pi2/9 locus in wild rice species.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2010;121(2):295-309.
2010: Melanie Febrer; Jose Luis Goicoechea; Jonathan Wright; Neil McKenzie; Xiang Song; Jinke Lin; Kristi Collura; Marina Wissotski; Yeisoo Yu; Jetty S S Ammiraju; Elzbieta Wolny; Dominika Idziak; Alexander Betekhtin; Dave Kudrna; Robert Hasterok; Rod A Wing; Michael W Bevan
An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.
PloS one 2010;5(10):e13461.
2009: Dongying Gao; Navdeep Gill; Hye-Ran Kim; Jason G Walling; Wenli Zhang; Chuanzhu Fan; Yeisoo Yu; Jianxin Ma; Phillip SanMiguel; Ning Jiang; Zhukuan Cheng; Rod A Wing; Jiming Jiang; Scott A Jackson
A lineage-specific centromere retrotransposon in Oryza brachyantha.
The Plant journal : for cell and molecular biology 2009;60(5):820-31.
2009: Carol Soderlund; Anne Descour; Dave Kudrna; Matthew Bomhoff; Lomax Boyd; Jennifer Currie; Angelina Angelova; Kristi Collura; Marina Wissotski; Elizabeth Ashley; Darren Morrow; John Fernandes; Virginia Walbot; Yeisoo Yu
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
PLoS genetics 2009;5(11):e1000740.
2009: Gyoungju Nah; Christopher L Pagliarulo; Peter G Mohr; Meizhong Luo; Nicholas B Sisneros; Yeisoo Yu; Kristi Collura; Jennifer Currie; José L Goicoechea; Rod A Wing; Karen S Schumaker
Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana.
Genomics 2009;94(3):196-203.
2009: Patrick H Degnan; Yeisoo Yu; Nicholas Sisneros; Rod A Wing; Nancy Moran
Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(22):9063-8.
2009: Husen Zhang; John K DiBaise; Andrea Zuccolo; Dave Kudrna; Michele Braidotti; Yeisoo Yu; Prathap Parameswaran; Michael D Crowell; Rod A Wing; Bruce Rittman; Rosa Krajmalnik-Brown
Human gut microbiota in obesity and after gastric bypass.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(7):2365-70.
2008: Jetty S S Ammiraju; Fei Lu; Abhijit Sanyal; Yeisoo Yu; Xiang Song; Ning Jiang; Ana Clara Pontaroli; Teri Rambo; Jennifer Currie; Kristi Collura; Jayson Talag; Chuanzhu Fan; José L Goicoechea; Andrea Zuccolo; Jinfeng Chen; Jeffrey L Bennetzen; Mingsheng Chen; Scott Jackson; Rod A Wing
Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.
The Plant cell 2008;20(12):3191-209.
2008: Chuanzhu Fan; Yong Zhang; Yeisoo Yu; Steve Rounsley; Manyuan Long; Rod A Wing
The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice.
Molecular plant 2008;1(5):839-50.
2008: Corrinne E Grover; Yeisoo Yu; Rod A Wing; Andrew H Paterson; Jonathan F Wendel
A phylogenetic analysis of indel dynamics in the cotton genus.
Molecular biology and evolution 2008;25(7):1415-28.
2008: Randy C Shoemaker; David Grant; Terry Olson; Wesley C Warren; Rod A Wing; Yeisoo Yu; HyeRan Kim; Perry Cregan; Bindu Joseph; Montona Futrell-Griggs; Will Nelson; Jon Davito; Jason Walker; John Wallis; Colin Kremitski; Debbie Scheer; Sandra W Clifton; Tina Graves; Henry Nguyen; Xiaolei Wu; Mingcheng Luo; Jan Dvorak; Rex Nelson; Steven Cannon; Jeffrey Tomkins; Jeremy Schmutz; Gary Stacey; Scott Jackson
Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2008;51(4):294-302.
2008: HyeRan Kim; Bonnie Hurwitz; Yeisoo Yu; Kristi Collura; Navdeep Gill; Phillip SanMiguel; James C Mullikin; Christopher A. Maher; William Nelson; Marina Wissotski; Michele Braidotti; Dave Kudrna; José L Goicoechea; Lincoln Stein; Doreen Ware; Scott A Jackson; Carol Soderlund; Rod A Wing
Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza.
Genome biology 2008;9(2):R45.
2007: Jetty S S Ammiraju; Andrea Zuccolo; Yeisoo Yu; Xiang Song; Benoit Piegu; Frederic Chevalier; Jason G Walling; Jianxin Ma; Jayson Talag; Darshan S Brar; Phillip SanMiguel; Ning Jiang; Scott A Jackson; Olivier Panaud; Rod A Wing
Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.
The Plant journal : for cell and molecular biology 2007;52(2):342-51.
2007: Andrea Zuccolo; Aswathy Sebastian; Jayson Talag; Yeisoo Yu; HyeRan Kim; Kristi Collura; Dave Kudrna; Rod A Wing
Transposable element distribution, abundance and role in genome size variation in the genus Oryza.
BMC evolutionary biology 2007;7():152.
2006: Jetty S S Ammiraju; Meizhong Luo; José L Goicoechea; Wenming Wang; Dave Kudrna; Christopher Mueller; Jayson Talag; HyeRan Kim; Nicholas B Sisneros; Barbara P Blackmon; Eric Fang; Jeffrey Tomkins; Darshan S Brar; David Mackill; Susan R McCouch; Nori Kurata; Georgina Lambert; David W Galbraith; K Arumuganathan; Kiran Rao; Jason G Walling; Navdeep Gill; Yeisoo Yu; Phillip SanMiguel; Carol Soderlund; Scott Jackson; Rod A Wing
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.
Genome research 2006;16(1):140-7.
2006: Meizhong Luo; Yeisoo Yu; Hyeran Kim; Dave Kudrna; Yuichiro Itoh; Robert J Agate; Esther Melamed; José L Goicoechea; Jayson Talag; Christopher Mueller; Wenming Wang; Jennifer Currie; Nicholas B Sisneros; Rod A Wing; Arthur P Arnold
Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region.
Genomics 2006;87(1):181-90.
2005: Jetty S S Ammiraju; Yeisoo Yu; Meizhong Luo; Dave Kudrna; HyeRan Kim; José L Goicoechea; Yuichi Katayose; Takashi Matsumoto; Jianzhong Wu; Takuji Sasaki; Rod A Wing
Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(8):1596-607.
2005: Rod A Wing; Jetty S S Ammiraju; Meizhong Luo; Hyeran Kim; Yeisoo Yu; Dave Kudrna; José L Goicoechea; Wenming Wang; William Nelson; Kiran Rao; Darshan S Brar; David Mackill; Bin Han; Carol Soderlund; Lincoln Stein; Phillip SanMiguel; Scott Jackson
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
Plant molecular biology 2005;59(1):53-62.
2005: Tae-Jin Yang; Yeisoo Yu; Song-Bin Chang; Hans de Jong; Chang-Sik Oh; Sang-Nag Ahn; Eric Fang; Rod A Wing
Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;111(3):467-78.
2005: Tae-Jin Yang; Seunghee Lee; Song-Bin Chang; Yeisoo Yu; Hans de Jong; Rod A Wing
In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons.
Chromosoma 2005;114(2):103-17.
2005: Chatchawan Jantasuriyarat; Malali Gowda; Karl Haller; James Hatfield; Guodong Lu; Eric Stahlberg; Bo Zhou; Huameng Li; HyRan Kim; Yeisoo Yu; Ralph A Dean; Rod A Wing; Carol Soderlund; Guo-Liang Wang
Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.
Plant physiology 2005;138(1):105-15.
2005: Renate Horn; Anne-Claire Lecouls; Ann Callahan; Abhaya Dandekar; Lilibeth Garay; Per McCord; Werner Howad; Helen Chan; Ignazio Verde; Dorrie Main; Sook Jung; Laura L Georgi; Sam Forrest; Jennifer Mook; Tatyana Zhebentyayeva; Yeisoo Yu; Hye Ran Kim; Christopher Jesudurai; Bryon Sosinski; Pere Arús; Vance Baird; Dan Parfitt; Gregory L Reighard; Ralph Scorza; Jeffrey Tomkins; Rod A Wing; Albert G Abbott
Candidate gene database and transcript map for peach, a model species for fruit trees.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2005;110(8):1419-28.
2004: Joachim Messing; Arvind K Bharti; Wojciech M Karlowski; Heidrun Gundlach; Hye Ran Kim; Yeisoo Yu; Fusheng Wei; Galina Fuks; Carol Soderlund; Klaus F X Mayer; Rod A Wing
Sequence composition and genome organization of maize.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(40):14349-54.
2003: Tae-Jin Yang; Yeisoo Yu; Gyoungju Nah; Michael Atkins; Seunghee Lee; David A Frisch; Rod A Wing
Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2003;107(4):652-60.
2002: Jeffrey Tomkins; Meizhong Luo; G C Fang; Dorrie Main; José L Goicoechea; M Atkins; David A Frisch; Robert E Page; Ernesto Guzmán-Novoa; Yeisoo Yu; Greg Hunt; Rod A Wing
New genomic resources for the honey bee(Apis mellifera L.): development of a deep-coverage BAC library and a preliminary STC database.
Genetics and molecular research : GMR 2002;1(4):306-16.
2001: GG Presting; MA Budiman; T Wood; Yeisoo Yu; Hye Ran Kim; José L Goicoechea; Eric Fang; B Blackman; Jiming Jiang; S S Woo; Ralph A Dean; David A Frisch; Rod A Wing
A framework for sequencing the rice genome.
Novartis Foundation symposium 2001;236():13-24; discussion 24-7.
2000: L Mao; Todd C Wood; Yeisoo Yu; MA Budiman; Jeffrey Tomkins; S Woo; M Sasinowski; GG Presting; David A Frisch; S Goff; Ralph A Dean; Rod A Wing
Rice transposable elements: a survey of 73,000 sequence-tagged-connectors.
Genome research 2000;10(7):982-90.
1999: J P Tomkins; David A Frisch; H Miller-Smith; S S Woo; Yeisoo Yu; Rod A Wing
A bacterial artificial chromosome library for sugarcane.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 1999;99(3-4):419-24.