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Kei Yura

Research Profile

Concepts & Ideas

Genes & Molecular Sequences

Amino Acid Sequences

Procedures

Sequence Alignment

Chemicals & Drugs

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Publications

TOP 3
Atsushi Hijikata; Kei Yura; T Noguti; Mitiko Go
Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility.
Atsushi Matsumoto; Tetsuji Kamata; Junichi Takagi; Kenji Iwasaki; Kei Yura
Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis.
Yuji Miyazawa; Hirotaka Nishioka; Kei Yura; Takahisa Yamato
Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue.

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All Publications

2011: Atsushi Hijikata; Kei Yura; T Noguti; Mitiko Go
Revisiting gap locations in amino acid sequence alignments and a proposal for a method to improve them by introducing solvent accessibility.
Proteins 2011;79(6):1868-77.
2008: Atsushi Matsumoto; Tetsuji Kamata; Junichi Takagi; Kenji Iwasaki; Kei Yura
Key interactions in integrin ectodomain responsible for global conformational change detected by elastic network normal-mode analysis.
Biophysical journal 2008;95(6):2895-908.
2008: Yuji Miyazawa; Hirotaka Nishioka; Kei Yura; Takahisa Yamato
Discrimination of class I cyclobutane pyrimidine dimer photolyase from blue light photoreceptors by single methionine residue.
Biophysical journal 2008;94(6):2194-203.
2007: Xiujun Gong; Kensuke Nakamura; Hua Yu; Kei Yura; Nobuhiro Go
BAAQ: an infrastructure for application integration and knowledge discovery in bioinformatics.
IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society 2007;11(4):428-34.
2006: Kei Yura; Masafumi Shionyu; Kei Hagino; Atsushi Hijikata; Yoshinori Hirashima; Taku Nakahara; Tatsuya Eguchi; Kazuki Shinoda; Akihiro Yamaguchi; Ken-Ichi Takahashi; Takeshi Itoh; Tadashi Imanishi; Takashi Gojobori; Mitiko Go
Alternative splicing in human transcriptome: functional and structural influence on proteins.
Gene 2006;380(2):63-71.
2006: Kei Yura; Akihiro Yamaguchi; Mitiko Go
Coverage of whole proteome by structural genomics observed through protein homology modeling database.
Journal of structural and functional genomics 2006;7(2):65-76.
2006: Oanh T P Kim; Kei Yura; Nobuhiro Go
Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction.
Nucleic acids research 2006;34(22):6450-60.
2006: Jun-ichi Takeda; Yutaka Suzuki; Mitsuteru Nakao; Roberto A Barrero; Kanako O Koyanagi; Lihua Jin; Chie Motono; Hiroko Hata; Takao Isogai; Keiichi Nagai; Tetsuji Otsuki; Vladimir Kuryshev; Masafumi Shionyu; Kei Yura; Mitiko Go; Jean Thierry-Mieg; Danielle Thierry-Mieg; Stefan Wiemann; Nobuo Nomura; Sumio Sugano; Takashi Gojobori; Tadashi Imanishi
Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.
Nucleic acids research 2006;34(14):3917-28.
2005: Oanh T P Kim; Kei Yura; Nobuhiro Go; Terue Harumoto
Newly sequenced eRF1s from ciliates: the diversity of stop codon usage and the molecular surfaces that are important for stop codon interactions.
Gene 2005;346():277-86.
2004: Satoshi Kaneko; Hitomi Ichinose; Zui Fujimoto; Atsushi Kuno; Kei Yura; Mitiko Go; Hiroshi Mizuno; Isao Kusakabe; Hideyuki Kobayashi
Structure and function of a family 10 beta-xylanase chimera of Streptomyces olivaceoviridis E-86 FXYN and Cellulomonas fimi Cex.
The Journal of biological chemistry 2004;279(25):26619-26.
2004: Oanh T P Kim; Kei Yura; Nobuhiro Go; Terue Harumoto
Highly divergent actins from karyorelictean, heterotrich, and litostome ciliates.
The Journal of eukaryotic microbiology 2004;51(2):227-33.
2004: Akihiro Yamaguchi; Kei Iida; Nobuaki Matsui; Shirou Tomoda; Kei Yura; Mitiko Go
Het-PDB Navi.: a database for protein-small molecule interactions.
Journal of biochemistry 2004;135(1):79-84.
2003: Kensuke Nakamura; Takeshi Kawabata; Kei Yura; Nobuhiro Go
Novel types of two-domain multi-copper oxidases: possible missing links in the evolution.
FEBS letters 2003;553(3):239-44.
2003: Akihiro Yamaguchi; Mitsuo Iwadate; Ei-ichiro Suzuki; Kei Yura; Shigetsugu Kawakita; Hideaki Umeyama; Mitiko Go
Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species.
Nucleic acids research 2003;31(1):463-8.
2002: Kei Yura; Mitiko Go
[3D-keynote: genome function prediction based on protein module].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2002;47(8 Suppl):1090-6.
2001: Shizue Yoshihara; Xiaoxing Geng; Shinobu Okamoto; Kei Yura; T Murata; Mitiko Go; Masayuki Ohmori; Masahiko Ikeuchi
Mutational analysis of genes involved in pilus structure, motility and transformation competency in the unicellular motile cyanobacterium Synechocystis sp. PCC 6803.
Plant & cell physiology 2001;42(1):63-73.
2000: S Kaneko; S Iwamatsu; Atsushi Kuno; Zui Fujimoto; Y Sato; Kei Yura; Mitiko Go; H Mizuno; K Taira; T Hasegawa; Isao Kusakabe; K Hayashi
Module shuffling of a family F/10 xylanase: replacement of modules M4 and M5 of the FXYN of Streptomyces olivaceoviridis E-86 with those of the Cex of Cellulomonas fimi.
Protein engineering 2000;13(12):873-9.
2000: H Kikuchi; H Wako; Kei Yura; Mitiko Go; M Mimuro
Significance of a two-domain structure in subunits of phycobiliproteins revealed by the normal mode analysis.
Biophysical journal 2000;79(3):1587-600.
1999: S Kaneko; Atsushi Kuno; Zui Fujimoto; D Shimizu; S Machida; Y Sato; Kei Yura; Mitiko Go; H Mizuno; K Taira; Isao Kusakabe; K Hayashi
An investigation of the nature and function of module 10 in a family F/10 xylanase FXYN of Streptomyces olivaceoviridis E-86 by module shuffling with the Cex of Cellulomonas fimi and by site-directed mutagenesis.
FEBS letters 1999;460(1):61-6.
1999: Y Sato; Y Niimura; Kei Yura; Mitiko Go
Module-intron correlation and intron sliding in family F/10 xylanase genes.
Gene 1999;238(1):93-101.
1999: Kei Yura; H Toh; Mitiko Go
Putative mechanism of natural transformation as deduced from genome data.
DNA research : an international journal for rapid publication of reports on genes and genomes 1999;6(2):75-82.
1999: Kei Yura; Masafumi Shionyu; K Kawatani; Mitiko Go
Repetitive use of a phosphate-binding module in DNA polymerase beta, Oct-1 POU domain and phage repressors.
Cellular and molecular life sciences : CMLS 1999;55(3):472-86.
1994: T Nakashima; Takeshi Sekiguchi; H Sunamoto; Kei Yura; S Tomoda; Mitiko Go; J Kere; David Schlessinger; Takeharu Nishimoto
Structure of the human CCG1 gene: relationship between the exons/introns and functional domain/modules of the protein.
Gene 1994;141(2):193-200.
1993: H Koga; Y Sagara; Takeshi Yaoi; M Tsujimura; K Nakamura; Kazuhisa Sekimizu; R Makino; H Shimada; Y Ishimura; Kei Yura
Essential role of the Arg112 residue of cytochrome P450cam for electron transfer from reduced putidaredoxin.
FEBS letters 1993;331(1-2):109-13.
1993: Kei Yura; S Tomoda; Mitiko Go
Repeat of a helix-turn-helix module in DNA-binding proteins.
Protein engineering 1993;6(6):621-8.