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Katsuhide Yutani
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41
Ogasahara, Kyoko
26
Yamagata, Yuriko
25
Takano, Kazufumi
11
Funahashi, Jun
6
Kuroishi, Chizu
6
Tsukihara, Tomitake
6
Tsunasawa, Susumu
5
Fujii, S
5
Kato, Ikunoshin
4
Ishida, Masami
4
Izu, Y
4
Goda, Shuichiro
4
Iimura, Satoshi
4
Kuroki, Ryota
4
Kuramitsu, Seiki
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All Publications
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2008: Bagautdinov Bagautdin; Matsuura Yoshinori; Bagautdinova Svetlana; Kunishima Naoki; Yutani Katsuhide
Structure of putative CutA1 from Homo sapiens determined at 2.05 A resolution.
Acta crystallographica. Section F, Structural biology and crystallization communications 2008;64(Pt 5):351-7.
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2008: Umezaki Taro; Iimura Satoshi; Noda Yasuo; Segawa Shin-Ichi; Yutani Katsuhide
The confirmation of the denatured structure of pyrrolidone carboxyl peptidase under nondenaturing conditions: difference in helix propensity of two synthetic peptides with single amino acid substitution.
Proteins 2008;71(2):737-42.
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2008: Sawano Masahide; Yamamoto Hitoshi; Ogasahara Kyoko; Kidokoro Shun-ichi; Katoh Shizue; Ohnuma Takayuki; Katoh Etsuko; Yokoyama Shigeyuki; Yutani Katsuhide
Thermodynamic basis for the stabilities of three CutA1s from Pyrococcus horikoshii,Thermus thermophilus, and Oryza sativa, with unusually high denaturation temperatures.
Biochemistry 2008;47(2):721-30.
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2007: Iimura Satoshi; Umezaki Taro; Takeuchi Makoto; Mizuguchi Mineyuki; Yagi Hiromasa; Ogasahara Kyoko; Akutsu Hideo; Noda Yasuo; Segawa Shin-ichi; Yutani Katsuhide
Characterization of the denatured structure of pyrrolidone carboxyl peptidase from a hyperthermophile under nondenaturing conditions: role of the C-terminal alpha-helix of the protein in folding and stability.
Biochemistry 2007;46(12):3664-72.
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2006: Tanaka Tomoyuki; Sawano Masahide; Ogasahara Kyoko; Sakaguchi Yasushi; Bagautdinov Bagautdin; Katoh Etsuko; Kuroishi Chizu; Shinkai Akeo; Yokoyama Shigeyuki; Yutani Katsuhide
Hyper-thermostability of CutA1 protein, with a denaturation temperature of nearly 150 degrees C.
FEBS letters 2006;580(17):4224-30.
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2006: Kaushik Jai K; Iimura Satoshi; Ogasahara Kyoko; Yamagata Yuriko; Segawa Shin-ichi; Yutani Katsuhide
Completely buried, non-ion-paired glutamic acid contributes favorably to the conformational stability of pyrrolidone carboxyl peptidases from hyperthermophiles.
Biochemistry 2006;45(23):7100-12.
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2006: Ishijima Jun; Uchida Yumiko; Kuroishi Chizu; Tuzuki Chizuru; Takahashi Naoko; Okazaki Nobuo; Yutani Katsuhide; Miyano Masashi
Crystal structure of alanyl-tRNA synthetase editing-domain homolog (PH0574) from a hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 A resolution.
Proteins 2006;62(4):1133-7.
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2005: Jeyakanthan Jeyaraman; Taka Junichiro; Kikuchi Akihiro; Kuroishi Chizu; Yutani Katsuhide; Shiro Yoshitugu
Purification, crystallization and preliminary X-ray crystallographic study of the L-fuculose-1-phosphate aldolase (FucA) from Thermus thermophilus HB8.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 12):1075-7.
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2005: Asada Yukuhiko; Sawano Masahide; Ogasahara Kyoko; Nakamura Junji; Ota Motonori; Kuroishi Chizu; Sugahara Mitsuaki; Yutani Katsuhide; Kunishima Naoki
Stabilization mechanism of the tryptophan synthase alpha-subunit from Thermus thermophilus HB8: X-ray crystallographic analysis and calorimetry.
Journal of biochemistry 2005;138(4):343-53.
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2005: Lee Soo Jae; Ogasahara Kyoko; Ma Jichun; Nishio Kazuya; Ishida Masami; Yamagata Yuriko; Tsukihara Tomitake; Yutani Katsuhide
Conformational Changes in the tryptophan synthase from a hyperthermophile upon alpha2beta2 complex formation: crystal structure of the complex.
Biochemistry 2005;44(34):11417-27.
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2005: Taka Junichiro; Ogasahara Kyoko; Jeyakanthan Jeyaraman; Kunishima Naoki; Kuroishi Chizu; Sugahara Mitsuaki; Yokoyama Shigeyuki; Yutani Katsuhide
Stabilization due to dimer formation of phosphoribosyl anthranilate isomerase from Thermus thermophilus HB8: X-ray Analysis and DSC experiments.
Journal of biochemistry 2005;137(5):569-78.
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2005: Nishio Kazuya; Morimoto Yukio; Ishizuka Manabu; Ogasahara Kyoko; Tsukihara Tomitake; Yutani Katsuhide
Conformational changes in the alpha-subunit coupled to binding of the beta 2-subunit of tryptophan synthase from Escherichia coli: crystal structure of the tryptophan synthase alpha-subunit alone.
Biochemistry 2005;44(4):1184-92.
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2004: Iimura Satoshi; Yagi Hiromasa; Ogasahara Kyoko; Akutsu Hideo; Noda Yasuo; Segawa Shin-ichi; Yutani Katsuhide
Unusually slow denaturation and refolding processes of pyrrolidone carboxyl peptidase from a hyperthermophile are highly cooperative: real-time NMR studies.
Biochemistry 2004;43(37):11906-15.
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2004: Ogasahara Kyoko; Yutani Katsuhide
[Circular dichroism]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(11 Suppl):1668-75.
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2004: Hioki Yusaku; Ogasahara Kyoko; Lee Soo Jae; Ma Jichun; Ishida Masami; Yamagata Yuriko; Matsuura Yoshiki; Ota Motonori; Ikeguchi Mitsunori; Kuramitsu Seiki; Yutani Katsuhide
The crystal structure of the tryptophan synthase beta subunit from the hyperthermophile Pyrococcus furiosus. Investigation of stabilization factors.
European journal of biochemistry / FEBS 2004;271(13):2624-35.
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2004: Takahashi Hitomi; Inagaki Eiji; Fujimoto Yayoi; Kuroishi Chizu; Nodake Yuichi; Nakamura Yuki; Arisaka Fumio; Yutani Katsuhide; Kuramitsu Seiki; Yokoyama Shigeyuki; Yamamoto Masaki; Miyano Masashi; Tahirov Tahir H
Structure and implications for the thermal stability of phosphopantetheine adenylyltransferase from Thermus thermophilus.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 1):97-104.
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2003: Funahashi Jun; Sugita Yuji; Kitao Akio; Yutani Katsuhide
How can free energy component analysis explain the difference in protein stability caused by amino acid substitutions? Effect of three hydrophobic mutations at the 56th residue on the stability of human lysozyme.
Protein engineering 2003;16(9):665-71.
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2003: Ogasahara Kyoko; Ishida Masami; Yutani Katsuhide
Stimulated interaction between and subunits of tryptophan synthase from hyperthermophile enhances its thermal stability.
The Journal of biological chemistry 2003;278(11):8922-8.
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2003: Takano Kazufumi; Yamagata Yuriko; Yutani Katsuhide
Buried water molecules contribute to the conformational stability of a protein.
Protein engineering 2003;16(1):5-9.
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2002: Goda Shuichiro; Takano Kazufumi; Yamagata Yuriko; Maki Saori; Namba Keiichi; Yutani Katsuhide
Elongation in a beta-structure promotes amyloid-like fibril formation of human lysozyme.
Journal of biochemistry 2002;132(4):655-61.
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2002: Funahashi Jun; Takano Kazufumi; Yamagata Yuriko; Yutani Katsuhide
Positive contribution of hydration structure on the surface of human lysozyme to the conformational stability.
The Journal of biological chemistry 2002;277(24):21792-800.
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2002: Kaushik Jai K; Ogasahara Kyoko; Yutani Katsuhide
The unusually slow relaxation kinetics of the folding-unfolding of pyrrolidone carboxyl peptidase from a hyperthermophile, Pyrococcus furiosus.
Journal of molecular biology 2002;316(4):991-1003.
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2001: Takano K; Yamagata Y; Yutani K
Role of amino acid residues in left-handed helical conformation for the conformational stability of a protein.
Proteins 2001;45(3):274-80.
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2001: Takano K; Yutani K
A new scale for side-chain contribution to protein stability based on the empirical stability analysis of mutant proteins.
Protein engineering 2001;14(8):525-8.
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2001: Takano K; Yamagata Y; Yutani K
Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme.
Proteins 2001;44(3):233-43.
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2001: Tanaka H; Chinami M; Mizushima T; Ogasahara K; Ota M; Tsukihara T; Yutani K
X-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, Pyrococcus furiosus, and its cys-free mutant.
Journal of biochemistry 2001;130(1):107-18.
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2001: Ogasahara K; Khechinashvili N N; Nakamura M; Yoshimoto T; Yutani K
Thermal stability of pyrrolidone carboxyl peptidases from the hyperthermophilic Archaeon, Pyrococcus furiosus.
European journal of biochemistry / FEBS 2001;268(11):3233-42.
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2001: Takano K; Yamagata Y; Yutani K
Contribution of polar groups in the interior of a protein to the conformational stability.
Biochemistry 2001;40(15):4853-8.
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2001: Yamagata Y; Ogasahara K; Hioki Y; Lee S J; Nakagawa A; Nakamura H; Ishida M; Kuramitsu S; Yutani K
Entropic stabilization of the tryptophan synthase alpha-subunit from a hyperthermophile, Pyrococcus furiosus. X-ray analysis and calorimetry.
The Journal of biological chemistry 2001;276(14):11062-71.
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2001: Funahashi J; Takano K; Yutani K
Are the parameters of various stabilization factors estimated from mutant human lysozymes compatible with other proteins?
Protein engineering 2001;14(2):127-34.
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2001: Takano K; Funahashi J; Yutani K
The stability and folding process of amyloidogenic mutant human lysozymes.
European journal of biochemistry / FEBS 2001;268(1):155-9.
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2001: Tokuriki N; Sakamoto K; Waluyo D; Makino Y; Ogasahara K; Yutani K; Urabe I; Yomo T
Effects of amino acid substitution on the physicochemical properties of artificial proteins with random sequences.
Journal of bioscience and bioengineering 2001;92(2):167-72.
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2000: Funahashi J; Takano K; Yamagata Y; Yutani K
Role of surface hydrophobic residues in the conformational stability of human lysozyme at three different positions.
Biochemistry 2000;39(47):14448-56.
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2000: Takano K; Tsuchimori K; Yamagata Y; Yutani K
Contribution of salt bridges near the surface of a protein to the conformational stability.
Biochemistry 2000;39(40):12375-81.
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2000: Takano K; Yamagata Y; Yutani K
Role of amino acid residues at turns in the conformational stability and folding of human lysozyme.
Biochemistry 2000;39(29):8655-65.
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2000: Goda S; Takano K; Yamagata Y; Katakura Y; Yutani K
Effect of extra N-terminal residues on the stability and folding of human lysozyme expressed in Pichia pastoris.
Protein engineering 2000;13(4):299-307.
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2000: Yutani K; Takayama G; Goda S; Yamagata Y; Maki S; Namba K; Tsunasawa S; Ogasahara K
The process of amyloid-like fibril formation by methionine aminopeptidase from a hyperthermophile, Pyrococcus furiosus.
Biochemistry 2000;39(10):2769-77.
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2000: Goda S; Takano K; Yamagata Y; Nagata R; Akutsu H; Maki S; Namba K; Yutani K
Amyloid protofilament formation of hen egg lysozyme in highly concentrated ethanol solution.
Protein science : a publication of the Protein Society 2000;9(2):369-75.
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1999: Takano K; Tsuchimori K; Yamagata Y; Yutani K
Effect of foreign N-terminal residues on the conformational stability of human lysozyme.
European journal of biochemistry / FEBS 1999;266(2):675-82.
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1999: Funahashi J; Takano K; Yamagata Y; Yutani K
Contribution of amino acid substitutions at two different interior positions to the conformational stability of human lysozyme.
Protein engineering 1999;12(10):841-50.
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1999: Takano K; Yamagata Y; Funahashi J; Hioki Y; Kuramitsu S; Yutani K
Contribution of intra- and intermolecular hydrogen bonds to the conformational stability of human lysozyme(,).
Biochemistry 1999;38(39):12698-708.
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1999: Takano K; Ota M; Ogasahara K; Yamagata Y; Nishikawa K; Yutani K
Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes.
Protein engineering 1999;12(8):663-72.
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1999: Takano K; Yamagata Y; Kubota M; Funahashi J; Fujii S; Yutani K
Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six Ser --> Ala mutants.
Biochemistry 1999;38(20):6623-9.
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1998: Ogasahara K; Nakamura M; Nakura S; Tsunasawa S; Kato I; Yoshimoto T; Yutani K
The unusually slow unfolding rate causes the high stability of pyrrolidone carboxyl peptidase from a hyperthermophile, Pyrococcus furiosus: equilibrium and kinetic studies of guanidine hydrochloride-induced unfolding and refolding.
Biochemistry 1998;37(50):17537-44.
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1998: Tahirov T H; Oki H; Tsukihara T; Ogasahara K; Yutani K; Ogata K; Izu Y; Tsunasawa S; Kato I
Crystal structure of methionine aminopeptidase from hyperthermophile, Pyrococcus furiosus.
Journal of molecular biology 1998;284(1):101-24.
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1998: Takano K; Yamagata Y; Yutani K
A general rule for the relationship between hydrophobic effect and conformational stability of a protein: stability and structure of a series of hydrophobic mutants of human lysozyme.
Journal of molecular biology 1998;280(4):749-61.
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1998: Yamagata Y; Kubota M; Sumikawa Y; Funahashi J; Takano K; Fujii S; Yutani K
Contribution of hydrogen bonds to the conformational stability of human lysozyme: calorimetry and X-ray analysis of six tyrosine --> phenylalanine mutants.
Biochemistry 1998;37(26):9355-62.
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1998: Ogasahara K; Lapshina E A; Sakai M; Izu Y; Tsunasawa S; Kato I; Yutani K
Electrostatic stabilization in methionine aminopeptidase from hyperthermophile Pyrococcus furiosus.
Biochemistry 1998;37(17):5939-46.
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1998: Tahirov T H; Oki H; Tsukihara T; Ogasahara K; Yutani K; Libeu C P; Izu Y; Tsunasawa S; Kato I
High-resolution crystals of methionine aminopeptidase from Pyrococcus furiosus obtained by water-mediated transformation.
Journal of structural biology 1998;121(1):68-72.
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1998: Yamauchi A; Yomo T; Tanaka F; Prijambada I D; Ohhashi S; Yamamoto K; Shima Y; Ogasahara K; Yutani K; Kataoka M; Urabe I
Characterization of soluble artificial proteins with random sequences.
FEBS letters 1998;421(2):147-51.
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1997: Tahirov T H; Oki H; Tsukihara T; Ogasahara K; Izu Y; Tsunasawa S; Kato I; Yutani K
Crystallization and preliminary X-ray analysis of methionine aminopeptidase from the hyperthermophilic bacterium Pyrococcus furiosus.
Acta crystallographica. Section D, Biological crystallography 1997;53(Pt 6):798-801.
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1997: Takano K; Funahashi J; Yamagata Y; Fujii S; Yutani K
Contribution of water molecules in the interior of a protein to the conformational stability.
Journal of molecular biology 1997;274(1):132-42.
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1997: Kobayashi C; Suga Y; Yamamoto K; Yomo T; Ogasahara K; Yutani K; Urabe I
Thermal conversion from low- to high-activity forms of catalase I from Bacillus stearothermophilus.
The Journal of biological chemistry 1997;272(37):23011-6.
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1997: Hiraga K; Yutani K
Roles of hydrogen bonding residues in the interaction between the alpha and beta subunits in the tryptophan synthase complex. Asn-104 of the alpha subunit is especially important.
The Journal of biological chemistry 1997;272(8):4935-40.
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1997: Ogasahara K; Yutani K
Equilibrium and kinetic analyses of unfolding and refolding for the conserved proline mutants of tryptophan synthase alpha subunit.
Biochemistry 1997;36(4):932-40.
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1997: Takano K; Yamagata Y; Fujii S; Yutani K
Contribution of the hydrophobic effect to the stability of human lysozyme: calorimetric studies and X-ray structural analyses of the nine valine to alanine mutants.
Biochemistry 1997;36(4):688-98.
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1996: Funahashi J; Takano K; Ogasahara K; Yamagata Y; Yutani K
The structure, stability, and folding process of amyloidogenic mutant human lysozyme.
Journal of biochemistry 1996;120(6):1216-23.
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1996: Hiraga K; Yutani K
A thermodynamic analysis of conformational change due to the alpha 2 beta 2 complex formation of tryptophan synthase.
European journal of biochemistry / FEBS 1996;240(1):63-70.
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1996: Hiraga K; Yutani K
Study of cysteine residues in the alpha subunit of Escherichia coli tryptophan synthase. 2. Role in enzymatic function.
Protein engineering 1996;9(5):433-8.
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1996: Hiraga K; Yutani K
Study of cysteine residues in the alpha subunit of Escherichia coli tryptophan synthase. 1. Role in conformational stability.
Protein engineering 1996;9(5):425-31.
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1995: Yamasaki K; Ogasahara K; Yutani K; Oobatake M; Kanaya S
Folding pathway of Escherichia coli ribonuclease HI: a circular dichroism, fluorescence, and NMR study.
Biochemistry 1995;34(51):16552-62.
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1995: Takano K; Ogasahara K; Kaneda H; Yamagata Y; Fujii S; Kanaya E; Kikuchi M; Oobatake M; Yutani K
Contribution of hydrophobic residues to the stability of human lysozyme: calorimetric studies and X-ray structural analysis of the five isoleucine to valine mutants.
Journal of molecular biology 1995;254(1):62-76.
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1994: Yutani K
[Conformational stability of a protein]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1994;39(7):1017-27.
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1994: Ogasahara K; Yutani K
Unfolding-refolding kinetics of the tryptophan synthase alpha subunit by CD and fluorescence measurements.
Journal of molecular biology 1994;236(4):1227-40.
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1993: Ogasahara K; Matsushita E; Yutani K
Further examination of the intermediate state in the denaturation of the tryptophan synthase alpha subunit. Evidence that the equilibrium denaturation intermediate is a molten globule.
Journal of molecular biology 1993;234(4):1197-206.
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1992: Kuroki R; Nitta K; Yutani K
Thermodynamic changes in the binding of Ca2+ to a mutant human lysozyme (D86/92). Enthalpy-entropy compensation observed upon Ca2+ binding to proteins.
The Journal of biological chemistry 1992;267(34):24297-301.
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1992: Yutani K; Ogasahara K; Kuwajima K
Absence of the thermal transition in apo-alpha-lactalbumin in the molten globule state. A study by differential scanning microcalorimetry.
Journal of molecular biology 1992;228(2):347-50.
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1992: Kuroki R; Inaka K; Taniyama Y; Kidokoro S; Matsushima M; Kikuchi M; Yutani K
Enthalpic destabilization of a mutant human lysozyme lacking a disulfide bridge between cysteine-77 and cysteine-95.
Biochemistry 1992;31(35):8323-8.
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1992: Herning T; Yutani K; Inaka K; Kuroki R; Matsushima M; Kikuchi M
Role of proline residues in human lysozyme stability: a scanning calorimetric study combined with X-ray structure analysis of proline mutants.
Biochemistry 1992;31(31):7077-85.
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1992: Ito W; Sakato N; Fujio H; Yutani K; Arata Y; Kurosawa Y
The His-probe method: effects of histidine residues introduced into the complementarity-determining regions of antibodies on antigen-antibody interactions at different pH values.
FEBS letters 1992;309(1):85-8.
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1992: Kuroki R; Kawakita S; Nakamura H; Yutani K
Entropic stabilization of a mutant human lysozyme induced by calcium binding.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(15):6803-7.
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1992: Ogasahara K; Hiraga K; Ito W; Miles E W; Yutani K
Origin of the mutual activation of the alpha and beta 2 subunits in the alpha 2 beta 2 complex of tryptophan synthase. Effect of alanine or glycine substitutions at proline residues in the alpha subunit.
The Journal of biological chemistry 1992;267(8):5222-8.
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1992: Taniyama Y; Ogasahara K; Yutani K; Kikuchi M
Folding mechanism of mutant human lysozyme C77/95A with increased secretion efficiency in yeast.
The Journal of biological chemistry 1992;267(7):4619-24.
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1991: Herning T; Yutani K; Taniyama Y; Kikuchi M
Effects of proline mutations on the unfolding and refolding of human lysozyme: the slow refolding kinetic phase does not result from proline cis-trans isomerization.
Biochemistry 1991;30(41):9882-91.
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1991: Yutani K; Hayashi S; Sugisaki Y; Ogasahara K
Role of conserved proline residues in stabilizing tryptophan synthase alpha subunit: analysis by mutants with alanine or glycine.
Proteins 1991;9(2):90-8.
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1990: Sawada S; Akutsu H; Ogasahara K; Yutani K
Assignment of tyrosine resonances in the 1H-NMR spectrum of tryptophan synthase alpha-subunit. Monitoring conformational changes due to substitutions at position 49.
European journal of biochemistry / FEBS 1990;189(3):667-73.
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1990: Ogasahara K; Yutani K
[Structure and function of tryptophan synthase]
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1990;35(3):201-11.
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1989: Ogasahara K; Sawada S; Yutani K
Comparison of CD spectra in the aromatic region on a series of variant proteins substituted at a unique position of tryptophan synthase alpha-subunit.
Proteins 1989;5(3):211-7.
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1988: Matsumura M; Yahanda S; Yasumura S; Yutani K; Aiba S
Role of tyrosine-80 in the stability of kanamycin nucleotidyltransferase analyzed by site-directed mutagenesis.
European journal of biochemistry / FEBS 1988;171(3):715-20.
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1987: Yutani K; Ogasahara K; Tsujita T; Kanemoto K; Matsumoto M; Tanaka S; Miyashita T; Matsushiro A; Sugino Y; Miles E W
Tryptophan synthase alpha subunit glutamic acid 49 is essential for activity. Studies with 19 mutants at position 49.
The Journal of biological chemistry 1987;262(28):13429-33.
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1987: Yutani K; Akutsu H; Ogasahara K; Tsujita T; Kyogoku Y
Proton nuclear magnetic resonance studies on the wild-type and single amino acid substituted tryptophan synthase alpha-subunits.
Biochemistry 1987;26(18):5666-71.
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1982: Yutani K; Khechinashvili N N; Lapshina E A; Privalov P L; Sugino Y
Calorimetric study of tryptophan synthase alpha-subunit and two mutant proteins.
International journal of peptide and protein research 1982;20(4):331-6.
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