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Tomasz Zemojtel

Research Profile

Living Beings

Mouse

Concepts & Ideas

Chemicals & Drugs

Genes & Molecular Sequences

Amino Acid Sequences

Physiology

Phenomena

Anatomy

Mammalian Embryo

Procedures

Sequence Alignment

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Publications

TOP 3
Ruping Sun; Martin Vingron; Tomasz Zemojtel; Ho-Ryun Chung; Anne-Katrin Emde; Michael I Love; Stefan A Haas
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.
Tomasz Zemojtel; Martin Vingron
P53 binding sites in transposons.
Shen Lin; Stefan Haas; Tomasz Zemojtel; Peng Xiao; Martin Vingron; Renhui Li
Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators.

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All Publications

2012: Ruping Sun; Martin Vingron; Tomasz Zemojtel; Ho-Ryun Chung; Anne-Katrin Emde; Michael I Love; Stefan A Haas
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads.
Bioinformatics (Oxford, England) 2012;28(7):1024-5.
2012: Tomasz Zemojtel; Martin Vingron
P53 binding sites in transposons.
Frontiers in genetics 2012;3():40.
2011: Shen Lin; Stefan Haas; Tomasz Zemojtel; Peng Xiao; Martin Vingron; Renhui Li
Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators.
Gene 2011;473(2):139-49.
2011: Tomasz Zemojtel; Peter F Arndt; Sarah Behrens; Guillaume Bourque; Szymon M Kielbasa; Martin Vingron
CpG deamination creates transcription factor-binding sites with high efficiency.
Genome biology and evolution 2011;3():1304-11.
2011: Mateusz Kolanczyk; Nadine Kossler; Jirko Kühnisch; Victor Mautner; Stefan Mundlos; Rosa Nguyen; Su-Jin Park; Boris Thurisch; Sigrid Tinschert; Eike Wegener; Tomasz Zemojtel; Patricia Birch; Anja Harder; Nikola Holtkamp; Aleksander Jamsheer; David Kendler; Lan Kluwe
MIA is a potential biomarker for tumour load in neurofibromatosis type 1.
BMC medicine 2011;9():82.
2011: Mateusz Kolanczyk; Markus Pech; Tomasz Zemojtel; Hiroshi Yamamoto; Ivan Mikula; Maria-Antonietta Calvaruso; Mariël van den Brand; Ricarda Richter; Bjoern Fischer; Anita Ritz; Nadine Kossler; Boris Thurisch; Ralf Spoerle; jan smeitink; Uwe Kornak; Danny Chan; Martin Vingron; Pavel Martasek; Robert N Lightowlers; Leo G J Nijtmans; Markus Schuelke; Knud H Nierhaus; Stefan Mundlos
NOA1 is an essential GTPase required for mitochondrial protein synthesis.
Molecular biology of the cell 2011;22(1):1-11.
2010: Tomasz Zemojtel; Marlena Duchniewicz; Zhongchun Zhang; Taisa Paluch; Hannes Luz; Tobias Penzkofer; Jürgen S Scheele; Fried J T Zwartkruis
Retrotransposition and mutation events yield Rap1 GTPases with differential signalling capacity.
BMC evolutionary biology 2010;10():55.
2009: Jurgen S Scheele; Mateusz Kolanczyk; Melanie Gantert; Tomasz Zemojtel; Annette Dorn; David B Sykes; David P Sykes; Dietrich C C Möbest; Mark P Kamps; Daniel Räpple; Marlena Duchniewicz
The Spt-Ada-Gcn5-acetyltransferase complex interaction motif of E2a is essential for a subset of transcriptional and oncogenic properties of E2a-Pbx1.
Leukemia & lymphoma 2009;50(5):816-28.
2009: Anne S Jürgens; Mateusz Kolanczyk; Dietrich C C Moebest; Tomasz Zemojtel; Urs Lichtenauer; Marlena Duchniewicz; Melanie P Gantert; Jochen Hecht; Uwe Hattenhorst; Stefan Burdach; Annette Dorn; Mark P Kamps; Felix Beuschlein; Daniel Räpple; Jürgen S Scheele
PBX1 is dispensable for neural commitment of RA-treated murine ES cells.
In vitro cellular & developmental biology. Animal 2009;45(5-6):252-63.
2009: D Raepple; F von Lintig; Tomasz Zemojtel; M Duchniewicz; Andreas Jung; Michael Lübbert; G R Boss; Jurgen S Scheele
Determination of Ras-GTP and Ras-GDP in patients with acute myelogenous leukemia (AML), myeloproliferative syndrome (MPS), juvenile myelomonocytic leukemia (JMML), acute lymphocytic leukemia (ALL), and malignant lymphoma: assessment of mutational and indirect activation.
Annals of hematology 2009;88(4):319-24.
2009: J William Lee; Tomasz Zemojtel; Eugene Shakhnovich
Systems-level evidence of transcriptional co-regulation of yeast protein complexes.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(2):331-9.
2009: Tomasz Zemojtel; Szymon M Kielbasa; Peter F Arndt; Ho-Ryun Chung; Martin Vingron
Methylation and deamination of CpGs generate p53-binding sites on a genomic scale.
Trends in genetics : TIG 2009;25(2):63-6.
2007: Urs D Lichtenauer; Marlena Duchniewicz; Mateusz Kolanczyk; Andreas Hoeflich; Stefanie Hahner; Tobias Else; Andrew B Bicknell; Tomasz Zemojtel; Nancy R Stallings; Dominik M Schulte; Mark P Kamps; Gary Hammer; Jürgen S Scheele; Felix Beuschlein
Pre-B-cell transcription factor 1 and steroidogenic factor 1 synergistically regulate adrenocortical growth and steroidogenesis.
Endocrinology 2007;148(2):693-704.
2007: Tomasz Zemojtel; Tobias Penzkofer; Jörg Schultz; Thomas Dandekar; Richard Badge; Martin Vingron
Exonization of active mouse L1s: a driver of transcriptome evolution?
BMC genomics 2007;8():392.
2006: Tomasz Zemojtel; Andreas Fröhlich; M Cristina Palmieri; Mateusz Kolanczyk; Ivan Mikula; Lucjan S Wyrwicz; Erich E Wanker; Stefan Mundlos; Martin Vingron; Pavel Martasek; Jörg Durner
Plant nitric oxide synthase: a never-ending story?
Trends in plant science 2006;11(11):524-5; author reply 526-8.
2006: Tomasz Zemojtel; Mateusz Kolanczyk; Nadine Kossler; Sigmar Stricker; Rudi Lurz; Ivan Mikula; Marlena Duchniewicz; Markus Schuelke; Pedram Ghafourifar; Pavel Martasek; Martin Vingron; Stefan Mundlos
Mammalian mitochondrial nitric oxide synthase: characterization of a novel candidate.
FEBS letters 2006;580(2):455-62.
2006: Marlena Duchniewicz; Tomasz Zemojtel; Mateusz Kolanczyk; Steffen Grossmann; Jürgen S Scheele; Fried J T Zwartkruis
Rap1A-deficient T and B cells show impaired integrin-mediated cell adhesion.
Molecular and cellular biology 2006;26(2):643-53.
2006: Tomasz Zemojtel; Tobias Penzkofer; Marlena Duchniewicz; Fried J T Zwartkruis
HRap1B-retro: a novel human processed rap1B gene blurs the picture?
Leukemia 2006;20(1):145-6; author reply 146-7.
2005: Tobias Penzkofer; Thomas Dandekar; Tomasz Zemojtel
L1Base: from functional annotation to prediction of active LINE-1 elements.
Nucleic acids research 2005;33(Database issue):D498-500.
2004: Krzysztof Ginalski; Tomasz Zemojtel
ECEPE proteins: a novel family of eukaryotic cysteine proteinases.
Trends in biochemical sciences 2004;29(10):524-6.
2004: Tomasz Zemojtel; Tobias Penzkofer; Thomas Dandekar; Jörg Schultz
A novel conserved family of nitric oxide synthase?
Trends in biochemical sciences 2004;29(5):224-6.
2004: Tomasz Zemojtel; Matteo Rini; Karsten Heyne; Thomas Dandekar; Erik T J Nibbering; Pawel M Kozlowski
NO-bound myoglobin: structural diversity and dynamics of the NO ligand.
Journal of the American Chemical Society 2004;126(7):1930-1.
2003: Tomasz Zemojtel; Rebecca C Wade; Thomas Dandekar
In search of the prototype of nitric oxide synthase.
FEBS letters 2003;554(1-2):1-5.
2003: Tomasz Zemojtel; Jurgen S Scheele; Pavel Martásek; Bettie Sue Masters; Vijay S Sharma; Douglas Magde
Role of the interdomain linker probed by kinetics of CO ligation to an endothelial nitric oxide synthase mutant lacking the calmodulin binding peptide (residues 503-517 in bovine).
Biochemistry 2003;42(21):6500-6.
2001: Jurgen S Scheele; E Bruner; Tomasz Zemojtel; Pavel Martásek; Linda Roman; Bettie Sue Masters; Vijay S Sharma; Douglas Magde
Kinetics of CO and NO ligation with the Cys(331)-->Ala mutant of neuronal nitric-oxide synthase.
The Journal of biological chemistry 2001;276(7):4733-6.