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Karsten Zengler

Research Profile

Living Beings

Genes & Molecular Sequences

Chemicals & Drugs

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Phenomena

Occupations

Systems Biology

Procedures

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Black Sea

Physiology

Metabolic Networks and Pathways

Co-author Network

Publications

TOP 3
Yu Qiu; Wendy Shieu; Elisa Abate; Christian L Barrett; Byung-Kwan Cho; James G Elkins; Mallory Embree; Katy Juárez; Derek R Lovley; Harish Nagarajan; Kelly P Nevin; Bernhard O Palsson; Karsten Zengler
Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.
Haythem Latif; Dae-Hee Lee; Joshua A Lerman; Harish Nagarajan; Vasiliy A Portnoy; Yu Qiu; Alexandra C Schrimpe-Rutledge; Richard D Smith; Yekaterina Tarasova; Joshua N Adkins; Karsten Zengler
The Genome Organization of Thermotoga maritima Reflects Its Lifestyle.
Yanming Gong; Derek Lovley; Ali Ebrahim; Mallory Embree; Adam M Feist; Tian Zhang; Karsten Zengler
Sulfide-driven microbial electrosynthesis.

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All Publications

2013: Yu Qiu; Wendy Shieu; Elisa Abate; Christian L Barrett; Byung-Kwan Cho; James G Elkins; Mallory Embree; Katy Juárez; Derek R Lovley; Harish Nagarajan; Kelly P Nevin; Bernhard O Palsson; Karsten Zengler
Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.
Nature communications 2013;4():1755.
2013: Haythem Latif; Dae-Hee Lee; Joshua A Lerman; Harish Nagarajan; Vasiliy A Portnoy; Yu Qiu; Alexandra C Schrimpe-Rutledge; Richard D Smith; Yekaterina Tarasova; Joshua N Adkins; Karsten Zengler
The Genome Organization of Thermotoga maritima Reflects Its Lifestyle.
PLoS genetics 2013;9(4):e1003485.
2013: Yanming Gong; Derek Lovley; Ali Ebrahim; Mallory Embree; Adam M Feist; Tian Zhang; Karsten Zengler
Sulfide-driven microbial electrosynthesis.
Environmental science & technology 2013;47(1):568-73.
2013: Teruaki Nakatsuji; Karsten Zengler; Hsin-I Chiang; Shangi B Jiang; Harish Nagarajan; Richard L Gallo
The microbiome extends to subepidermal compartments of normal skin.
Nature communications 2013;4():1431.
2012: Karine Alain; Jens Harder; Friedrich Widdel; Karsten Zengler
Anaerobic utilization of toluene by marine alpha- and gammaproteobacteria reducing nitrate.
Microbiology (Reading, England) 2012;158(Pt 12):2946-57.
2012: Karsten Zengler; Bernhard O Palsson
A road map for the development of community systems (CoSy) biology.
Nature reviews. Microbiology 2012;10(5):366-72.
2012: Dmitry A Ravcheev; Karsten Zengler; Alexey E Kazakov; Yuri D Korostelev; Haythem Latif; Semen A Leyn; Xiaoqing Li; Pavel Novichkov; Andrei Osterman; Dmitry A Rodionov
Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex.
Journal of bacteriology 2012;194(5):1145-57.
2012: Joshua A Lerman; Nathan E Lewis; Jeffrey D Orth; Vasiliy A Portnoy; Alexandra C Schrimpe-Rutledge; Richard D Smith; Karsten Zengler; Joshua N Adkins; Daniel R Hyduke; Haythem Latif; Bernhard O Palsson
In silico method for modelling metabolism and gene product expression at genome scale.
Nature communications 2012;3():929.
2011: Byung-Kwan Cho; Bernhard Palsson; Karsten Zengler
Deciphering the regulatory codes in bacterial genomes.
Biotechnology journal 2011;6(9):1052-63.
2011: Vasiliy A Portnoy; Daniela Bezdan; Karsten Zengler
Adaptive laboratory evolution--harnessing the power of biology for metabolic engineering.
Current opinion in biotechnology 2011;22(4):590-4.
2011: Ines Thiele; Daniel R Hyduke; Benjamin Steeb; Guy Fankam; Douglas K Allen; Susanna Bazzani; Pep Charusanti; Feng-Chi Chen; Ronan M T Fleming; Chao A Hsiung; Sigrid C J De Keersmaecker; Yu-Chieh Liao; Kathleen Marchal; Monica L Mo; Emre Özdemir; Anu Raghunathan; Jennifer L Reed; Sook-il Shin; Sara Sigurbjörnsdóttir; Jonas Steinmann; Suresh Sudarsan; Neil Swainston; Inge M Thijs; Karsten Zengler; Bernhard O Palsson; Joshua N Adkins; Dirk Bumann
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.
BMC systems biology 2011;5():8.
2011: Pier-Luc Tremblay; Zarath M Summers; Richard H Glaven; Kelly P Nevin; Karsten Zengler; Christian L Barrett; Yu Qiu; Bernhard O Palsson; Derek R Lovley
A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.
Environmental microbiology 2011;13(1):13-23.
2010: Bernhard Palsson; Karsten Zengler
The challenges of integrating multi-omic data sets.
Nature chemical biology 2010;6(11):787-9.
2010: Anna Klimes; Ashley E Franks; Richard H Glaven; Hoa Tran; Christian L Barrett; Yu Qiu; Karsten Zengler; Derek R Lovley
Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA.
FEMS microbiology letters 2010;310(1):62-8.
2010: Yu Qiu; Byung-Kwan Cho; Young Seoub Park; Derek Lovley; Bernhard Ø Palsson; Karsten Zengler
Structural and operational complexity of the Geobacter sulfurreducens genome.
Genome research 2010;20(9):1304-11.
2010: Harish Nagarajan; Jessica E Butler; Anna Klimes; Yu Qiu; Karsten Zengler; Joy Ward; Nelson D Young; Barbara A Methé; Bernhard Ø Palsson; Derek R Lovley; Christian L Barrett
De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.
PloS one 2010;5(6):e10922.
2009: Karsten Zengler
Central role of the cell in microbial ecology.
Microbiology and molecular biology reviews : MMBR 2009;73(4):712-29.
2009: Byung-Kwan Cho; Karsten Zengler; Yu Qiu; Young Seoub Park; Eric M Knight; Christian L Barrett; Yuan Gao; Bernhard Ø Palsson
The transcription unit architecture of the Escherichia coli genome.
Nature biotechnology 2009;27(11):1043-9.
2007: Mircea Podar; Carl B Abulencia; Marion Walcher; Don Hutchison; Karsten Zengler; Joseph A Garcia; Trevin Holland; David Cotton; Loren Hauser; Martin Keller
Targeted access to the genomes of low-abundance organisms in complex microbial communities.
Applied and environmental microbiology 2007;73(10):3205-14.
2005: Vadim V Kevbrin; Karsten Zengler; Anatoly M Lysenko; Juergen Wiegel
Anoxybacillus kamchatkensis sp. nov., a novel thermophilic facultative aerobic bacterium with a broad pH optimum from the Geyser valley, Kamchatka.
Extremophiles : life under extreme conditions 2005;9(5):391-8.
2005: Karsten Zengler; Marion Walcher; Greg Clark; Imke Haller; Gerardo Toledo; Trevin Holland; Eric J Mathur; Gary Woodnutt; Jay Short; Martin Keller
High-throughput cultivation of microorganisms using microcapsules.
Methods in enzymology 2005;397():124-30.
2004: Martin Keller; Karsten Zengler
Tapping into microbial diversity.
Nature reviews. Microbiology 2004;2(2):141-50.
2002: Karsten Zengler; Gerardo Toledo; Michael Rappe; James Elkins; Eric J Mathur; Jay Short; Martin Keller
Cultivating the uncultured.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(24):15681-6.