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Jin Zhang

Research Profile

Procedures

Fluorescence Resonance Energy Transfer

Chemicals & Drugs

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Publications

TOP 3
Vedangi Sample; Jeffrey J Saucerman; Jason H Yang; Lisa M DiPilato; Qiang Ni; Jin Zhang
Regulation of nuclear PKA revealed by spatiotemporal manipulation of cyclic AMP.
Jinhua Huang; Jessica R Yang; Jin Zhang; Jiong Yang
Total synthesis and structure-activity relationship study of the potent cAMP signaling agonist (-)-alotaketal A.
Charlene Depry; Sohum Mehta; Jin Zhang
Multiplexed visualization of dynamic signaling networks using genetically encoded fluorescent protein-based biosensors.

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All Publications

2013: Vedangi Sample; Jeffrey J Saucerman; Jason H Yang; Lisa M DiPilato; Qiang Ni; Jin Zhang
Regulation of nuclear PKA revealed by spatiotemporal manipulation of cyclic AMP.
Nature chemical biology 2013;9(6):406.
2013: Jinhua Huang; Jessica R Yang; Jin Zhang; Jiong Yang
Total synthesis and structure-activity relationship study of the potent cAMP signaling agonist (-)-alotaketal A.
Organic & biomolecular chemistry 2013;11(19):3212-22.
2013: Charlene Depry; Sohum Mehta; Jin Zhang
Multiplexed visualization of dynamic signaling networks using genetically encoded fluorescent protein-based biosensors.
Pflügers Archiv : European journal of physiology 2013;465(3):373-81.
2013: Vedangi Sample; TAKANARI INOUE; Sohum Mehta; QIANG NI; Jin Zhang
Controlling enzymatic action in living cells with a kinase-inducible bimolecular switch.
ACS chemical biology 2013;8(1):116-21.
2013: Robert H Newman; QIANG NI; Akhilesh Pandey; Tony Pawson; Hee-Sool Rho; Alexey G Ryazanov; Matthew Shirley; Benjamin E Turk; Crystal Woodard; George Wu; SHULI XIA; Zhi Xie; Donald J Zack; Jin Zhang; Heng Zhu; Jun Seop Jeong; Morris J Birnbaum; Seth Blackshaw; Hillary M Clark; Philip A Cole; Christopher Cooper; Kevin N Dalby; Stephen Desiderio; Xinxin Gao; Anne-Claude Gingras; Renu Goel; Jianfei Hu; Shaohui Hu; Woochang Hwang; Hongkai Ji; Stefan Knapp; Jimmy Lin; John Neiswinger; Jiang Qian
Construction of human activity-based phosphorylation networks.
Molecular systems biology 2013;9():655.
2012: Peter Dedecker; Sam Duwé; Robert K Neely; Jin Zhang
Localizer: fast, accurate, open-source, and modular software package for superresolution microscopy.
Journal of biomedical optics 2012;17(12):126008.
2012: Beverley M Dancy; Louis C Mahadevan; DAVID MEYERS; Chandrani Mukherjee; Daniel J Peterson; Minoru Yoshida; Jin Zhang; Young-Hoon Ahn; Jef Boeke; Erin M Bowers; Nicholas T Crump; Philip A Cole
Live-cell studies of p300/CBP histone acetyltransferase activity and inhibition.
Chembiochem : a European journal of chemical biology 2012;13(14):2113-21.
2012: Isabel Martinez Ferrando; Katie Herbst-Robinson; Harrys K C Jacob; Vikram Katju; Henrik Molina; Akhilesh Pandey; Jin Zhang; Jun Zhong; Ron Bose; Raghothama Chaerkady; Beverley M Dancy; Philip A Cole
Identification of targets of c-Src tyrosine kinase by chemical complementation and phosphoproteomics.
Molecular & cellular proteomics : MCP 2012;11(8):355-69.
2012: Peter Dedecker; Thomas Dertinger; Gary C H Mo; Jin Zhang
Widely accessible method for superresolution fluorescence imaging of living systems.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(27):10909-14.
2012: Ambhighainath Ganesan; Jin Zhang
How cells process information: quantification of spatiotemporal signaling dynamics.
Protein science : a publication of the Protein Society 2012;21(7):918-28.
2012: Jinhua Huang; Jessica R Yang; Jin Zhang; Jiong Yang
Total synthesis of the potent cAMP signaling agonist (-)-alotaketal A.
Journal of the American Chemical Society 2012;134(21):8806-9.
2012: Vedangi Sample; Jeffrey J Saucerman; Jason H Yang; Lisa M DiPilato; QIANG NI; Jin Zhang
Regulation of nuclear PKA revealed by spatiotemporal manipulation of cyclic AMP.
Nature chemical biology 2012;8(4):375-82.
2012: Nwe-Nwe Aye-Han; QIANG NI; Michael D Allen; Jin Zhang
Parallel tracking of cAMP and PKA signaling dynamics in living cells with FRET-based fluorescent biosensors.
Molecular bioSystems 2012;8(5):1435-40.
2012: Ana Rita Nunes; Vedangi Sample; Yang K Xiang; Estelle B Gauda; Emília C Monteiro; Jin Zhang
Effect of oxygen on phosphodiesterases (PDE) 3 and 4 isoforms and PKA activity in the superior cervical ganglia.
Advances in experimental medicine and biology 2012;758():287-94.
2012: Xin Zhou; Katie J Herbst-Robinson; Jin Zhang
Visualizing dynamic activities of signaling enzymes using genetically encodable FRET-based biosensors from designs to applications.
Methods in enzymology 2012;504():317-40.
2012: Ana del Puerto; Miguel Díaz-Hernández; Juan Ignacio Diaz-Hernandez; Rosa Gomez-Villafuertes; M Teresa Miras-Portugal; Mónica Tapia; Francisco Wandosell; Jin Zhang; María José Benitez; Juan José Garrido
Adenylate cyclase 5 coordinates the action of ADP, P2Y1, P2Y13 and ATP-gated P2X7 receptors on axonal elongation.
Journal of cell science 2012;125(Pt 1):176-88.
2011: Khalid Chakir; Charlene Depry; Veronica L Dimaano; Nickolai Dulin; Theodore P Abraham; Jozef Bartunek; Shu-bai Liu; Eiki Takimoto; Gordon F Tomaselli; Marc Vanderheyden; Yang K Xiang; Rui-Ping Xiao; Jin Zhang; Manling Zhang; Wei-Zhong Zhu; David A Kass
Galphas-biased beta2-adrenergic receptor signaling from restoring synchronous contraction in the failing heart.
Science translational medicine 2011;3(100):100ra88.
2011: Xinxin Gao; Pamela R Lowry; Zhikui Wei; GUANG WILLIAM WONG; Charlene Depry; Xin Zhou; Jin Zhang
PI3K/Akt signaling requires spatial compartmentalization in plasma membrane microdomains.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(35):14509-14.
2011: Sohum Mehta; Jin Zhang
Reporting from the field: genetically encoded fluorescent reporters uncover signaling dynamics in living biological systems.
Annual review of biochemistry 2011;80():375-401.
2011: Robert H Newman; Matthew D Fosbrink; Jin Zhang
Genetically encodable fluorescent biosensors for tracking signaling dynamics in living cells.
Chemical reviews 2011;111(5):3614-66.
2011: Katie J Herbst; Michael D Allen; Jin Zhang
Luminescent kinase activity biosensors based on a versatile bimolecular switch.
Journal of the American Chemical Society 2011;133(15):5676-9.
2011: Katie J Herbst; Carla Coltharp; Mario Amzel; Jin Zhang
Direct activation of Epac by sulfonylurea is isoform selective.
Chemistry & biology 2011;18(2):243-51.
2011: Shubai Liu; Jin Zhang; Yang K Xiang
FRET-based direct detection of dynamic protein kinase A activity on the sarcoplasmic reticulum in cardiomyocytes.
Biochemical and biophysical research communications 2011;404(2):581-6.
2011: Charlene Depry; Jin Zhang
Using FRET-based reporters to visualize subcellular dynamics of protein kinase A activity.
Methods in molecular biology (Clifton, N.J.) 2011;756():285-94.
2011: Mei Wan; Jun Li; Katie Herbst; Jin Zhang; Bing Yu; Xiangwei Wu; Tao Qiu; Weiqi Lei; Charlotta Lindvall; Bart Williams; Hairong Ma; Fengjie Zhang; Xu Cao
LRP6 mediates cAMP generation by G protein-coupled receptors through regulating the membrane targeting of Gα(s).
Science signaling 2011;4(164):ra15.
2011: QIANG NI; Ambhighainath Ganesan; Nwe-Nwe Aye-Han; Xinxin Gao; Michael D Allen; Andre Levchenko; Jin Zhang
Signaling diversity of PKA achieved via a Ca2+-cAMP-PKA oscillatory circuit.
Nature chemical biology 2011;7(1):34-40.
2011: Charlene Depry; Michael D Allen; Jin Zhang
Visualization of PKA activity in plasma membrane microdomains.
Molecular bioSystems 2011;7(1):52-8.
2010: John J Gildea; Ishan Shah; Ryan Weiss; Nicholas D Casscells; Helen E McGrath; Jin Zhang; John Jones; Robin A Felder
HK-2 human renal proximal tubule cells as a model for G protein-coupled receptor kinase type 4-mediated dopamine 1 receptor uncoupling.
Hypertension 2010;56(3):505-11.
2010: Charlene Depry; Jin Zhang
Visualization of kinase activity with FRET-based activity biosensors.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2010;Chapter 18():Unit 18.15.
2010: Toshiyuki Yamashiro; Hideaki Kuge; Jin Zhang; Koichi Honke
Calcineurin mediates the angiotensin II-induced aldosterone synthesis in the adrenal glands by up-regulation of transcription of the CYP11B2 gene.
Journal of biochemistry 2010;148(1):115-23.
2010: Matthew Fosbrink; Nwe-Nwe Aye-Han; Raymond Cheong; Andre Levchenko; Jin Zhang
Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(12):5459-64.
2010: Lisa M DiPilato; Jin Zhang
Fluorescent protein-based biosensors: resolving spatiotemporal dynamics of signaling.
Current opinion in chemical biology 2010;14(1):37-42.
2010: Xinxin Gao; Jin Zhang
FRET-based activity biosensors to probe compartmentalized signaling.
Chembiochem : a European journal of chemical biology 2010;11(2):147-51.
2010: QIANG NI; Jin Zhang
Dynamic visualization of cellular signaling.
Advances in biochemical engineering/biotechnology 2010;119():79-97.
2009: John J Gildea; Jonathan A Israel; Andrew K Johnson; Jin Zhang; Pedro Jose; Robin A Felder
Caveolin-1 and dopamine-mediated internalization of NaKATPase in human renal proximal tubule cells.
Hypertension 2009;54(5):1070-6.
2009: Vedangi Sample; Robert H Newman; Jin Zhang
The structure and function of fluorescent proteins.
Chemical Society reviews 2009;38(10):2852-64.
2009: Nwe-Nwe Aye-Han; QIANG NI; Jin Zhang
Fluorescent biosensors for real-time tracking of post-translational modification dynamics.
Current opinion in chemical biology 2009;13(4):392-7.
2009: Katie J Herbst; QIANG NI; Jin Zhang
Dynamic visualization of signal transduction in living cells: from second messengers to kinases.
IUBMB life 2009;61(9):902-8.
2009: Lisa M DiPilato; Jin Zhang
The role of membrane microdomains in shaping beta2-adrenergic receptor-mediated cAMP dynamics.
Molecular bioSystems 2009;5(8):832-7.
2009: Dagoberto Soto; Vania De Arcangelis; Jin Zhang; Yang Xiang
Dynamic protein kinase a activities induced by beta-adrenoceptors dictate signaling propagation for substrate phosphorylation and myocyte contraction.
Circulation research 2009;104(6):770-9.
2009: Jin Zhang
The colorful journey of green fluorescent protein.
ACS chemical biology 2009;4(2):85-8.
2009: Jihye Seong; Shaoying Lu; Mingxing Ouyang; He Huang; Jin Zhang; Margaret C Frame; Yingxiao Wang
Visualization of Src activity at different compartments of the plasma membrane by FRET imaging.
Chemistry & biology 2009;16(1):48-57.
2009: Meghdad Rahdar; TAKANARI INOUE; Tobias Meyer; Jin Zhang; Francisca Vazquez; Peter N Devreotes
A phosphorylation-dependent intramolecular interaction regulates the membrane association and activity of the tumor suppressor PTEN.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(2):480-5.
2009: Xinxin Gao; Jin Zhang
Akt signaling dynamics in plasma membrane microdomains visualized by FRET-based reporters.
Communicative & integrative biology 2009;2(1):32-4.
2009: Katie J Herbst; Michael D Allen; Jin Zhang
The cAMP-dependent protein kinase inhibitor H-89 attenuates the bioluminescence signal produced by Renilla Luciferase.
PloS one 2009;4(5):e5642.
2008: Chinten James Lim; Kristin H Kain; Eugene Tkachenko; Lawrence E Goldfinger; Edgar Gutierrez; Michael D Allen; Alex Groisman; Jin Zhang; Mark H Ginsberg
Integrin-mediated protein kinase A activation at the leading edge of migrating cells.
Molecular biology of the cell 2008;19(11):4930-41.
2008: Xinxin Gao; Jin Zhang
Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains.
Molecular biology of the cell 2008;19(10):4366-73.
2008: Lawrence szewczuk; Mary K Tarrant; Vedangi Sample; William J Drury; Jin Zhang; Philip A Cole
Analysis of serotonin N-acetyltransferase regulation in vitro and in live cells using protein semisynthesis.
Biochemistry 2008;47(39):10407-19.
2008: Pierre Vincent; Nicolas Gervasi; Jin Zhang
Real-time monitoring of cyclic nucleotide signaling in neurons using genetically encoded FRET probes.
Brain cell biology 2008;36(1-4):3-17.
2008: Robert H Newman; Jin Zhang
Small molecules and chemical tools at the interface.
Nature chemical biology 2008;4(7):382-6.
2008: Robert H Newman; Jin Zhang
Visualization of phosphatase activity in living cells with a FRET-based calcineurin activity sensor.
Molecular bioSystems 2008;4(6):496-501.
2008: Robert H Newman; Jin Zhang
Fucci: street lights on the road to mitosis.
Chemistry & biology 2008;15(2):97-8.
2008: Jonathan D Violin; Lisa M DiPilato; Necmettin Yildirim; Timothy C Elston; Jin Zhang; Robert J Lefkowitz
beta2-adrenergic receptor signaling and desensitization elucidated by quantitative modeling of real time cAMP dynamics.
The Journal of biological chemistry 2008;283(5):2949-61.
2008: Bharath Ananthanarayanan; QIANG NI; Jin Zhang
Chapter 2: Molecular sensors based on fluorescence resonance energy transfer to visualize cellular dynamics.
Methods in cell biology 2008;89():37-57.
2008: yunzhao richard ren; Fan Pan; Suhel Parvez; Andrea Fleig; Curtis R Chong; Jing Xu; Yongjun Dang; Jin Zhang; Hongsi Jiang; Reinhold Penner; Jun O Liu
Clofazimine inhibits human Kv1.3 potassium channel by perturbing calcium oscillation in T lymphocytes.
PloS one 2008;3(12):e4009.
2008: Michael D Allen; Lisa M DiPilato; Bharath Ananthanarayanan; Robert H Newman; QIANG NI; Jin Zhang
Dynamic visualization of signaling activities in living cells.
Science signaling 2008;1(37):pt6.
2008: Shaoying Lu; Mingxing Ouyang; Jihye Seong; Jin Zhang; Shu Chien; Yingxiao Wang
The spatiotemporal pattern of Src activation at lipid rafts revealed by diffusion-corrected FRET imaging.
PLoS computational biology 2008;4(7):e1000127.
2008: Michael D Allen; Jin Zhang
A tunable FRET circuit for engineering fluorescent biosensors.
Angewandte Chemie (International ed. in English) 2008;47(3):500-2.
2007: Bharath Ananthanarayanan; Matthew Fosbrink; Meghdad Rahdar; Jin Zhang
Live-cell molecular analysis of Akt activation reveals roles for activation loop phosphorylation.
The Journal of biological chemistry 2007;282(50):36634-41.
2007: Jin Zhang; Michael D Allen
FRET-based biosensors for protein kinases: illuminating the kinome.
Molecular bioSystems 2007;3(11):759-65.
2007: Benjamin D Sachs; George S Baillie; Julianne R McCall; Melissa A Passino; Christian Schachtrup; Derek A Wallace; Allan J Dunlop; Kirsty F MacKenzie; Enno Klussmann; Martin J Lynch; Shoana L Sikorski; Tal Nuriel; Igor Tsigelny; Jin Zhang; Miles D Houslay; Moses V Chao; Katerina Akassoglou
p75 neurotrophin receptor regulates tissue fibrosis through inhibition of plasminogen activation via a PDE4/cAMP/PKA pathway.
The Journal of cell biology 2007;177(6):1119-32.
2007: Nicolas Gervasi; Régine Hepp; Ludovic Tricoire; Jin Zhang; Bertrand Lambolez; Danièle Paupardin-Tritsch; Pierre Vincent
Dynamics of protein kinase A signaling at the membrane, in the cytosol, and in the nucleus of neurons in mouse brain slices.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2007;27(11):2744-50.
2006: Timothy A Dunn; Chih-Tien Wang; Michael A Colicos; Manuela Zaccolo; Lisa M DiPilato; Jin Zhang; Roger Y Tsien; Marla B Feller
Imaging of cAMP levels and protein kinase A activity reveals that retinal waves drive oscillations in second-messenger cascades.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2006;26(49):12807-15.
2006: Lisa M DiPilato; Jin Zhang
FRETting mice shed light on cardiac adrenergic signaling.
Circulation research 2006;99(10):1021-3.
2006: QIANG NI; Denis V Titov; Jin Zhang
Analyzing protein kinase dynamics in living cells with FRET reporters.
Methods (San Diego, Calif.) 2006;40(3):279-86.
2006: Michael D Allen; Jin Zhang
Subcellular dynamics of protein kinase A activity visualized by FRET-based reporters.
Biochemical and biophysical research communications 2006;348(2):716-21.
2006: Jeffrey J Saucerman; Jin Zhang; Jody C Martin; Lili X Peng; Antine Elaine Stenbit; Roger Y Tsien; Andrew D McCulloch
Systems analysis of PKA-mediated phosphorylation gradients in live cardiac myocytes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(34):12923-8.
2006: Michael D Allen; Lisa M DiPilato; Meghdad Rahdar; yunzhao richard ren; Curtis Chong; Jun O Liu; Jin Zhang
Reading dynamic kinase activity in living cells for high-throughput screening.
ACS chemical biology 2006;1(6):371-6.
2006: Yingfeng Qiao; Henrik Molina; Akhilesh Pandey; Jin Zhang; Philip A Cole
Chemical rescue of a mutant enzyme in living cells.
Science (New York, N.Y.) 2006;311(5765):1293-7.
2005: Bharath Ananthanarayanan; QIANG NI; Jin Zhang
Signal propagation from membrane messengers to nuclear effectors revealed by reporters of phosphoinositide dynamics and Akt activity.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(42):15081-6.
2005: Jin Zhang; Christopher J Hupfeld; Susan S Taylor; Jerrold M Olefsky; Roger Y Tsien
Insulin disrupts beta-adrenergic signalling to protein kinase A in adipocytes.
Nature 2005;437(7058):569-73.
2005: Maya T Kunkel; QIANG NI; Roger Y Tsien; Jin Zhang; Alexandra C Newton
Spatio-temporal dynamics of protein kinase B/Akt signaling revealed by a genetically encoded fluorescent reporter.
The Journal of biological chemistry 2005;280(7):5581-7.
2004: Lisa M DiPilato; Xiaodong Cheng; Jin Zhang
Fluorescent indicators of cAMP and Epac activation reveal differential dynamics of cAMP signaling within discrete subcellular compartments.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(47):16513-8.
2003: Jonathan D Violin; Jin Zhang; Roger Y Tsien; Alexandra C Newton
A genetically encoded fluorescent reporter reveals oscillatory phosphorylation by protein kinase C.
The Journal of cell biology 2003;161(5):899-909.
2002: Jin Zhang; Robert E Campbell; Alice Y Ting; Roger Y Tsien
Creating new fluorescent probes for cell biology.
Nature reviews. Molecular cell biology 2002;3(12):906-18.
2001: Jin Zhang; Y Ma; Susan S Taylor; Roger Y Tsien
Genetically encoded reporters of protein kinase A activity reveal impact of substrate tethering.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(26):14997-5002.
2001: Jin Zhang; Richard E Clatterbuck; Daniele Rigamonti; David D Chang; Harry C Dietz
Interaction between krit1 and icap1alpha infers perturbation of integrin beta1-mediated angiogenesis in the pathogenesis of cerebral cavernous malformation.
Human molecular genetics 2001;10(25):2953-60.
2001: J H Li; Jin Zhang
PARP inhibitors.
IDrugs : the investigational drugs journal 2001;4(7):804-12.
2001: Jin Zhang; Honglin Chen; Gerry Weinmaster; S Diane Hayward
Epstein-Barr virus BamHi-a rightward transcript-encoded RPMS protein interacts with the CBF1-associated corepressor CIR to negatively regulate the activity of EBNA2 and NotchIC.
Journal of virology 2001;75(6):2946-56.
2000: Jin Zhang; R E Clatterbuck; Daniele Rigamonti; Harry C Dietz
Cloning of the murine Krit1 cDNA reveals novel mammalian 5' coding exons.
Genomics 2000;70(3):392-5.
2000: DF Scollan; A Holmes; Jin Zhang; Raimond L Winslow
Reconstruction of cardiac ventricular geometry and fiber orientation using magnetic resonance imaging.
Annals of biomedical engineering 2000;28(8):934-44.
2000: Raimond L Winslow; DF Scollan; A Holmes; C K Yung; Jin Zhang; M Saleet Jafri
Electrophysiological modeling of cardiac ventricular function: from cell to organ.
Annual review of biomedical engineering 2000;2():119-55.
1999: T A Morrow; Stefan A Muljo; Jin Zhang; J Marie Hardwick; Mark S Schlissel
Pro-B-cell-specific transcription and proapoptotic function of protein kinase Ceta.
Molecular and cellular biology 1999;19(8):5608-18.
1999: Andrew A Pieper; Ajay Verma; Jin Zhang; Solomon H Snyder
Poly (ADP-ribose) polymerase, nitric oxide and cell death.
Trends in pharmacological sciences 1999;20(4):171-81.
1996: Jin Zhang; S Lautar
A yeast three-hybrid method to clone ternary protein complex components.
Analytical biochemistry 1996;242(1):68-72.
1994: Jin Zhang; Valina Dawson; Ted M Dawson; Solomon H Snyder
Nitric oxide activation of poly(ADP-ribose) synthetase in neurotoxicity.
Science (New York, N.Y.) 1994;263(5147):687-9.
1994: Ted M Dawson; Jin Zhang; Valina Dawson; Solomon H Snyder
Nitric oxide: cellular regulation and neuronal injury.
Progress in brain research 1994;103():365-9.
1993: Jin Zhang; Solomon H Snyder
Purification of a nitric oxide-stimulated ADP-ribosylated protein using biotinylated beta-nicotinamide adenine dinucleotide.
Biochemistry 1993;32(9):2228-33.
1992: Jin Zhang; Solomon H Snyder
Nitric oxide stimulates auto-ADP-ribosylation of glyceraldehyde-3-phosphate dehydrogenase.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(20):9382-5.
1992: Suresh V Ambudkar; I H Lelong; Jin Zhang; Carol Cardarelli; Michael M Gottesman; Ira Pastan
Partial purification and reconstitution of the human multidrug-resistance pump: characterization of the drug-stimulatable ATP hydrolysis.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(18):8472-6.