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Xing Zhang

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Publications

TOP 3
Yiwei Liu; Xing Zhang; Robert Blumenthal; Xiaodong Cheng
A common mode of recognition for methylated CpG.
Hideharu Hashimoto; Xing Zhang; Xiaodong Cheng
Selective excision of 5-carboxylcytosine by a thymine DNA glycosylase mutant.
Yiwei Liu; Hiroyuki Sasaki; Hidehiro Toh; Xing Zhang; Xiaodong Cheng
An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence.

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All Publications

2013: Yiwei Liu; Xing Zhang; Robert Blumenthal; Xiaodong Cheng
A common mode of recognition for methylated CpG.
Trends in biochemical sciences 2013;38(4):177-83.
2013: Hideharu Hashimoto; Xing Zhang; Xiaodong Cheng
Selective excision of 5-carboxylcytosine by a thymine DNA glycosylase mutant.
Journal of molecular biology 2013;425(6):971-6.
2012: Yiwei Liu; Hiroyuki Sasaki; Hidehiro Toh; Xing Zhang; Xiaodong Cheng
An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence.
Genes & development 2012;26(21):2374-9.
2012: Hideharu Hashimoto; Samuel Hong; Xing Zhang; Ashok S Bhagwat; Xiaodong Cheng
Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.
Nucleic acids research 2012;40(20):10203-14.
2012: John Horton; Megumu Yamada Mabuchi; Richard J Roberts; Mala Samaranayake; Xing Zhang; Yu Zheng; Devora Cohen-Karni; Rose M Griggs; Xiaodong Cheng
Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease.
Nucleic acids research 2012;40(19):9763-73.
2012: Hideharu Hashimoto; Xing Zhang; Xiaodong Cheng
Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation.
Nucleic acids research 2012;40(17):8276-84.
2012: Hideharu Hashimoto; Shelley B Howerton; Yiwei Liu; Anup K Upadhyay; Paula M Vertino; Xing Zhang; Yanqi Chang; Xiaodong Cheng
Recognition and potential mechanisms for replication and erasure of cytosine hydroxymethylation.
Nucleic acids research 2012;40(11):4841-9.
2012: Anup K Upadhyay; Young-Sup Yoon; Xing Zhang; Yanqi Chang; Ji Woong Han; Ruogu Hu; Donatella Labella; Antonello Mai; dante rotili; Xiaodong Cheng
An analog of BIX-01294 selectively inhibits a family of histone H3 lysine 9 Jumonji demethylases.
Journal of molecular biology 2012;416(3):319-27.
2011: Anup K Upadhyay; Xing Zhang; John Horton; Xiaodong Cheng
Coordinated methyl-lysine erasure: structural and functional linkage of a Jumonji demethylase domain and a reader domain.
Current opinion in structural biology 2011;21(6):750-60.
2011: Yanqi Chang; Or Gozani; John Horton; Dan Levy; Junmin Peng; Xing Zhang; Xiaodong Cheng
Structural basis of SETD6-mediated regulation of the NF-kB network via methyl-lysine signaling.
Nucleic acids research 2011;39(15):6380-9.
2011: Yanqi Chang; John Horton; Mark T Bedford; Xing Zhang; Xiaodong Cheng
Structural insights for MPP8 chromodomain interaction with histone H3 lysine 9: potential effect of phosphorylation on methyl-lysine binding.
Journal of molecular biology 2011;408(5):807-14.
2011: Yanqi Chang; Mark T Bedford; Alexsandra Espejo; Jia Fang; Mikiko Fukuda; John R Horton; Victoria Izumi; Kenji Kokura; John M Koomen; Yoichi Shinkai; Lidong Sun; Xing Zhang; Xiaodong Cheng
MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a.
Nature communications 2011;2():533.
2010: Yanqi Chang; Thota Ganesh; John Horton; Astrid Spannhoff; Jin Liu; Aiming Sun; Xing Zhang; Mark T Bedford; Yoichi Shinkai; James P Snyder; Xiaodong Cheng
Adding a lysine mimic in the design of potent inhibitors of histone lysine methyltransferases.
Journal of molecular biology 2010;400(1):1-7.
2010: John Horton; Anup K Upadhyay; Hank H Qi; Xing Zhang; Yang Shi; Xiaodong Cheng
Enzymatic and structural insights for substrate specificity of a family of jumonji histone lysine demethylases.
Nature structural & molecular biology 2010;17(1):38-43.
2009: Tiyu Gao; Robert E Collins; John Horton; Xing Zhang; Rongguang Zhang; Arunkumar Dhayalan; Raluca Tamas; Albert Jeltsch; Xiaodong Cheng
The ankyrin repeat domain of Huntingtin interacting protein 14 contains a surface aromatic cage, a potential site for methyl-lysine binding.
Proteins 2009;76(3):772-7.
2009: Yanqi Chang; Xing Zhang; John Horton; Anup K Upadhyay; Astrid Spannhoff; Jin Liu; James P Snyder; Mark T Bedford; Xiaodong Cheng
Structural basis for G9a-like protein lysine methyltransferase inhibition by BIX-01294.
Nature structural & molecular biology 2009;16(3):312-7.
2009: Hideharu Hashimoto; John Horton; Xing Zhang; Xiaodong Cheng
UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications.
Epigenetics : official journal of the DNA Methylation Society 2009;4(1):8-14.
2008: Hideharu Hashimoto; John Horton; Xing Zhang; Magnolia Bostick; Steven E Jacobsen; Xiaodong Cheng
The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix.
Nature 2008;455(7214):826-9.
2008: Robert E Collins; Jeffrey P Northrop; John Horton; David Y Lee; Xing Zhang; Michael R Stallcup; Xiaodong Cheng
The ankyrin repeats of G9a and GLP histone methyltransferases are mono- and dimethyllysine binding modules.
Nature structural & molecular biology 2008;15(3):245-50.
2007: Da Jia; Renata Z Jurkowska; Xing Zhang; Albert Jeltsch; Xiaodong Cheng
Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.
Nature 2007;449(7159):248-51.
2007: John Horton; Stuart J Elgar; Seema I Khan; Xing Zhang; Paul A Wade; Xiaodong Cheng
Structure of the SANT domain from the Xenopus chromatin remodeling factor ISWI.
Proteins 2007;67(4):1198-202.
2007: Xiaodong Cheng; Xing Zhang
Structural dynamics of protein lysine methylation and demethylation.
Mutation research 2007;618(1-2):102-15.
2006: John Horton; Xing Zhang; Robert Maunus; Zhe Yang; Geoffrey G Wilson; Richard J Roberts; Xiaodong Cheng
DNA nicking by HinP1I endonuclease: bending, base flipping and minor groove expansion.
Nucleic acids research 2006;34(3):939-48.
2005: Robert E Collins; Makoto Tachibana; Hisashi Tamaru; Kristina Smith; Da Jia; Xing Zhang; Eric U Selker; Yoichi Shinkai; Xiaodong Cheng
In vitro and in vivo analyses of a Phe/Tyr switch controlling product specificity of histone lysine methyltransferases.
The Journal of biological chemistry 2005;280(7):5563-70.
2005: Xiaodong Cheng; Robert E Collins; Xing Zhang
Structural and sequence motifs of protein (histone) methylation enzymes.
Annual review of biophysics and biomolecular structure 2005;34():267-94.
2004: Ken Sawada; Zhe Yang; John Horton; Robert E Collins; Xing Zhang; Xiaodong Cheng
Structure of the conserved core of the yeast Dot1p, a nucleosomal histone H3 lysine 79 methyltransferase.
The Journal of biological chemistry 2004;279(41):43296-306.
2004: Aiping Dong; Lan Zhou; Xing Zhang; Shawn Stickel; Richard J Roberts; Xiaodong Cheng
Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions.
Biological chemistry 2004;385(5):373-9.
2003: Zhe Yang; John Horton; Lan Zhou; Xu Jia Zhang; Aiping Dong; Xing Zhang; Samuel L Schlagman; Valeri G Kossykh; Stanley Hattman; Xiaodong Cheng
Structure of the bacteriophage T4 DNA adenine methyltransferase.
Nature structural biology 2003;10(10):849-55.
2003: Xing Zhang; Zhe Yang; Seema I Khan; John Horton; Hisashi Tamaru; Eric U Selker; Xiaodong Cheng
Structural basis for the product specificity of histone lysine methyltransferases.
Molecular cell 2003;12(1):177-85.
2003: Xing Zhang; Xiaodong Cheng
Structure of the predominant protein arginine methyltransferase PRMT1 and analysis of its binding to substrate peptides.
Structure (London, England : 1993) 2003;11(5):509-20.
2003: Hisashi Tamaru; Xing Zhang; Debra McMillen; Prim B Singh; Jun-ichi Nakayama; Shiv I S Grewal; C David Allis; Xiaodong Cheng; Eric U Selker
Trimethylated lysine 9 of histone H3 is a mark for DNA methylation in Neurospora crassa.
Nature genetics 2003;34(1):75-9.
2003: Peiying Wu; Chen Qiu; anjum sohail; Xing Zhang; Ashok S Bhagwat; Xiaodong Cheng
Mismatch repair in methylated DNA. Structure and activity of the mismatch-specific thymine glycosylase domain of methyl-CpG-binding protein MBD4.
The Journal of biological chemistry 2003;278(7):5285-91.
2002: Xing Zhang; Hisashi Tamaru; Seema I Khan; John Horton; Lisa J Keefe; Eric U Selker; Xiaodong Cheng
Structure of the Neurospora SET domain protein DIM-5, a histone H3 lysine methyltransferase.
Cell 2002;111(1):117-27.
2002: Deanna M Green; Kavita A Marfatia; Emily B Crafton; Xing Zhang; Xiaodong Cheng; Anita H Corbett
Nab2p is required for poly(A) RNA export in Saccharomyces cerevisiae and is regulated by arginine methylation via Hmt1p.
The Journal of biological chemistry 2002;277(10):7752-60.
2002: Chen Qiu; Ken Sawada; Xing Zhang; Xiaodong Cheng
The PWWP domain of mammalian DNA methyltransferase Dnmt3b defines a new family of DNA-binding folds.
Nature structural biology 2002;9(3):217-24.
2001: John Horton; Ken Sawada; M Nishibori; Xing Zhang; Xiaodong Cheng
Two polymorphic forms of human histamine methyltransferase: structural, thermal, and kinetic comparisons.
Structure (London, England : 1993) 2001;9(9):837-49.
2001: A Dong; Jeffrey A Yoder; Xing Zhang; L Zhou; Timothy H Bestor; Xiaodong Cheng
Structure of human DNMT2, an enigmatic DNA methyltransferase homolog that displays denaturant-resistant binding to DNA.
Nucleic acids research 2001;29(2):439-48.
2000: Xing Zhang; Lan Zhou; Xiaodong Cheng
Crystal structure of the conserved core of protein arginine methyltransferase PRMT3.
The EMBO journal 2000;19(14):3509-19.
1999: Margaret M O'gara; Xing Zhang; Richard J Roberts; Xiaodong Cheng
Structure of a binary complex of HhaI methyltransferase with S-adenosyl-L-methionine formed in the presence of a short non-specific DNA oligonucleotide.
Journal of molecular biology 1999;287(2):201-9.