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Yingming Zhao

Research Profile

Occupations

Proteomics

Anatomy

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Chemicals & Drugs

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Phosphorylation

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Amino Acid Sequences

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Molecular Sequence Data

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Publications

TOP 3
Junmei Zhang; Yue Chen; Zhihong Zhang; Gang Xing; Joanna Wysocka; Yingming Zhao
MS/MS/MS reveals false positive identification of histone serine methylation.
Yue Chen; Junmei Zhang; Gang Xing; Yingming Zhao
Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra.
Wei Chen; Yue Chen; Bing-e Xu; Yu-Chi Juang; Steve Stippec; Yingming Zhao; Melanie H Cobb
Regulation of a third conserved phosphorylation site in SGK1.

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All Publications

2010: Junmei Zhang; Yue Chen; Zhihong Zhang; Gang Xing; Joanna Wysocka; Yingming Zhao
MS/MS/MS reveals false positive identification of histone serine methylation.
Journal of proteome research 2010;9(1):585-94.
2009: Yue Chen; Junmei Zhang; Gang Xing; Yingming Zhao
Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra.
Journal of proteome research 2009;8(6):3141-7.
2009: Wei Chen; Yue Chen; Bing-e Xu; Yu-Chi Juang; Steve Stippec; Yingming Zhao; Melanie H Cobb
Regulation of a third conserved phosphorylation site in SGK1.
The Journal of biological chemistry 2009;284(6):3453-60.
2009: Yue Chen; Wei Chen; Melanie H Cobb; Yingming Zhao
PTMap--a sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(3):761-6.
2009: Zhongyi Cheng; Yi Tang; Yue Chen; Sungchan Kim; Huadong Liu; Shawn S-C Li; Wei Gu; Yingming Zhao
Molecular characterization of propionyllysines in non-histone proteins.
Molecular & cellular proteomics : MCP 2009;8(1):45-52.
2008: Robert W. Sprung; Yue Chen; Kai Zhang; Dongmei Cheng; Terry Zhang; Junmin Peng; Yingming Zhao
Identification and validation of eukaryotic aspartate and glutamate methylation in proteins.
Journal of proteome research 2008;7(3):1001-6.
2007: Jungseog Kang; Yue Chen; Yingming Zhao; Hongtao Yu
Autophosphorylation-dependent activation of human Mps1 is required for the spindle checkpoint.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(51):20232-7.
2007: Bingsheng Chang; Yue Chen; Yingming Zhao; Richard K Bruick
JMJD6 is a histone arginine demethylase.
Science (New York, N.Y.) 2007;318(5849):444-7.
2007: René Bartz; John K Zehmer; Meifang Zhu; Yue Chen; Ginette Serrero; Yingming Zhao; Pingsheng Liu
Dynamic activity of lipid droplets: protein phosphorylation and GTP-mediated protein translocation.
Journal of proteome research 2007;6(8):3256-65.
2007: Yue Chen; Robert W. Sprung; Yi Tang; Haydn Ball; Bhavani Sangras; Sung Chan Kim; John R Falck; Junmin Peng; Wei Gu; Yingming Zhao
Lysine propionylation and butyrylation are novel post-translational modifications in histones.
Molecular & cellular proteomics : MCP 2007;6(5):812-9.
2007: Malavika Raman; Svetlana Earnest; Kai Zhang; Yingming Zhao; Melanie H Cobb
TAO kinases mediate activation of p38 in response to DNA damage.
The EMBO journal 2007;26(8):2005-14.
2007: Jaeick Lee; Yingda Xu; Yue Chen; Robert W. Sprung; Sung Chan Kim; Shanhai Xie; Yingming Zhao
Mitochondrial phosphoproteome revealed by an improved IMAC method and MS/MS/MS.
Molecular & cellular proteomics : MCP 2007;6(4):669-76.
2007: Yingda Xu; Robert W. Sprung; Sung Won Kwon; Sung Chan Kim; Yingming Zhao
Isolation of phosphopeptides by pI-difference-based electrophoresis.
Journal of proteome research 2007;6(3):1153-7.
2006: Sung Chan Kim; Yue Chen; Shama Mirza; Yingda Xu; Jaeick Lee; Pingsheng Liu; Yingming Zhao
A clean, more efficient method for in-solution digestion of protein mixtures without detergent or urea.
Journal of proteome research 2006;5(12):3446-52.
2006: Yuchen Chien; Sungchan Kim; Ron Bumeister; Yueh-Ming Loo; Sung Won Kwon; Cynthia L Johnson; Mirey G Balakireva; Yves Romeo; Levy Kopelovich; Michael Gale; Charles Yeaman; Jacques Camonis; Yingming Zhao; Michael A White
RalB GTPase-mediated activation of the IkappaB family kinase TBK1 couples innate immune signaling to tumor cell survival.
Cell 2006;127(1):157-70.
2006: Sung Chan Kim; Robert W. Sprung; Yue Chen; Yingda Xu; Haydn Ball; Jimin Pei; Tzuling Cheng; Yoonjung Kho; Hao Xiao; Lin Xiao; Nick V Grishin; Michael White; Xiang-Jiao Yang; Yingming Zhao
Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.
Molecular cell 2006;23(4):607-18.
2006: Anthony N Anselmo; Svetlana Earnest; Wei Chen; Yu-Chi Juang; Sung Chan Kim; Yingming Zhao; Melanie H Cobb
WNK1 and OSR1 regulate the Na+, K+, 2Cl- cotransporter in HeLa cells.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(29):10883-8.
2006: Derk D Binns; Tom Januszewski; Yue Chen; Justin Hill; Vladislav S Markin; Yingming Zhao; Christopher Gilpin; Kent D Chapman; Richard G W Anderson; Joel M Goodman
An intimate collaboration between peroxisomes and lipid bodies.
The Journal of cell biology 2006;173(5):719-31.
2006: Animesh Nandi; Robert W. Sprung; Deb K Barma; Yingxin Zhao; Sung Chan Kim; John R Falck; Yingming Zhao
Global identification of O-GlcNAc-modified proteins.
Analytical chemistry 2006;78(2):452-8.
2006: Sung Chan Kim; Yoonjung Kho; Deb K Barma; John R Falck; Yingming Zhao
A tagging-via-substrate technology for genome-wide detection and identification of farnesylated proteins.
Methods in enzymology 2006;407():629-37.
2006: Kerrie-Ann McMahon; Meifang Zhu; Sung Won Kwon; Pingsheng Liu; Yingming Zhao; Richard G W Anderson
Detergent-free caveolae proteome suggests an interaction with ER and mitochondria.
Proteomics 2006;6(1):143-52.
2005: Yue Chen; Sung Chan Kim; Yingming Zhao
High-throughput identification of in-gel digested proteins by rapid, isocratic HPLC/MS/MS.
Analytical chemistry 2005;77(24):8179-84.
2005: Gang Zhi; Jeffrey W Ryder; Jian Huang; Peiguo Ding; Yue Chen; Yingming Zhao; Kristine E Kamm; James T Stull
Myosin light chain kinase and myosin phosphorylation effect frequency-dependent potentiation of skeletal muscle contraction.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(48):17519-24.
2005: Yue Chen; Sung Won Kwon; Sung Chan Kim; Yingming Zhao
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra.
Journal of proteome research 2005;4(3):998-1005.
2005: Robert W. Sprung; Animesh Nandi; Yue Chen; Sung Chan Kim; Deb K Barma; John R Falck; Yingming Zhao
Tagging-via-substrate strategy for probing O-GlcNAc modified proteins.
Journal of proteome research 2005;4(3):950-7.
2004: Yoonjung Kho; Sung Chan Kim; Chen Jiang; Deb K Barma; Sung Won Kwon; Jinke Cheng; Janis Jaunbergs; Carolyn Weinbaum; Fuyuhiko Tamanoi; John R Falck; Yingming Zhao
A tagging-via-substrate technology for detection and proteomics of farnesylated proteins.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(34):12479-84.
2004: Yingming Zhao; Sung Won Kwon; Anthony N Anselmo; Kiran Kaur; Michael A White
Broad spectrum identification of cellular small ubiquitin-related modifier (SUMO) substrate proteins.
The Journal of biological chemistry 2004;279(20):20999-1002.
2004: Yingxin Zhao; Wei Zhang; Yoonjung Kho; Yingming Zhao
Proteomic analysis of integral plasma membrane proteins.
Analytical chemistry 2004;76(7):1817-23.
2004: Pingsheng Liu; Yunshu Ying; Yingming Zhao; Dorothy I Mundy; Meifang Zhu; Richard G W Anderson
Chinese hamster ovary K2 cell lipid droplets appear to be metabolic organelles involved in membrane traffic.
The Journal of biological chemistry 2004;279(5):3787-92.
2003: Yingxin Zhao; Wei Zhang; Michael A White; Yingming Zhao
Capillary high-performance liquid chromatography/mass spectrometric analysis of proteins from affinity-purified plasma membrane.
Analytical chemistry 2003;75(15):3751-7.
2003: Wei Zhang; Ge Zhou; Yingxin Zhao; Michael A White; Yingming Zhao
Affinity enrichment of plasma membrane for proteomics analysis.
Electrophoresis 2003;24(16):2855-63.
2003: Sung Won Kwon; Sung Chan Kim; Janis Jaunbergs; John R Falck; Yingming Zhao
Selective enrichment of thiophosphorylated polypeptides as a tool for the analysis of protein phosphorylation.
Molecular & cellular proteomics : MCP 2003;2(4):242-7.
2003: Xuejun Jiang; Hyun-Eui Kim; Hongjun Shu; Yingming Zhao; Haichao Zhang; James Kofron; Jennifer Donnelly; Dave Burns; Shi-Chung Ng; Saul Rosenberg; Xiaodong Wang
Distinctive roles of PHAP proteins and prothymosin-alpha in a death regulatory pathway.
Science (New York, N.Y.) 2003;299(5604):223-6.
2002: Ge Zhou; Hongmei Li; Dianne DeCamp; She Chen; Hongjun Shu; Yi Gong; Michael J Flaig; John W Gillespie; Nan Hu; Philip R Taylor; Michael R Emmert-Buck; Lance A Liotta; Emanuel F Petricoin; Yingming Zhao
2D differential in-gel electrophoresis for the identification of esophageal scans cell cancer-specific protein markers.
Molecular & cellular proteomics : MCP 2002;1(2):117-24.
2000: Daniel J Garry; Annette P Meeson; Joel Elterman; Yingming Zhao; P Yang; Rhonda Bassel-Duby; R Sanders Williams
Myogenic stem cell function is impaired in mice lacking the forkhead/winged helix protein MNF.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(10):5416-21.