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Peter Zuber

Research Profile

Living Beings

Bacillus subtilis

Chemicals & Drugs

Physiology

Concepts & Ideas

Molecular Sequence Data

Genes & Molecular Sequences

Anatomy

Spores, Bacterial

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Publications

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Chio Mui Chan; Saurabh Garg; Ann A Lin; Peter Zuber
Geobacillus thermodenitrificans YjbH recognizes the C-terminal end of Bacillus subtilis Spx to accelerate Spx proteolysis by ClpXP.
Sushma Kommineni; Saurabh K Garg; Chio Mui Chan; Peter Zuber
YjbH-enhanced proteolysis of Spx by ClpXP in Bacillus subtilis is inhibited by the small protein YirB (YuzO).
S L Bräuer; C Adams; K Kranzler; D Murphy; M Xu; Peter Zuber; H M Simon; A M Baptista; Bradley M Tebo
Culturable Rhodobacter and Shewanella species are abundant in estuarine turbidity maxima of the Columbia River.

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All Publications

2012: Chio Mui Chan; Saurabh Garg; Ann A Lin; Peter Zuber
Geobacillus thermodenitrificans YjbH recognizes the C-terminal end of Bacillus subtilis Spx to accelerate Spx proteolysis by ClpXP.
Microbiology (Reading, England) 2012;158(Pt 5):1268-78.
2011: Sushma Kommineni; Saurabh K Garg; Chio Mui Chan; Peter Zuber
YjbH-enhanced proteolysis of Spx by ClpXP in Bacillus subtilis is inhibited by the small protein YirB (YuzO).
Journal of bacteriology 2011;193(9):2133-40.
2011: S L Bräuer; C Adams; K Kranzler; D Murphy; M Xu; Peter Zuber; H M Simon; A M Baptista; Bradley M Tebo
Culturable Rhodobacter and Shewanella species are abundant in estuarine turbidity maxima of the Columbia River.
Environmental microbiology 2011;13(3):589-603.
2011: Peter Zuber; Michiko M Nakano; Praseeda Pilaka; Haike Antelmann; Skye M Barendt; Shefali Chauhan; Bui Khanh Chi; Sairam Gurumoorthy; Ann A Lin; Ulrike Mäder
Phenotype enhancement screen of a regulatory spx mutant unveils a role for the ytpQ gene in the control of iron homeostasis.
PloS one 2011;6(9):e25066.
2010: Maria W Smith; Lydie Herfort; Kaitlin Tyrol; Dominic Suciu; Victoria Campbell; Byron C Crump; Tawnya D Peterson; Peter Zuber; Antonio M Baptista; Holly M Simon
Seasonal changes in bacterial and archaeal gene expression patterns across salinity gradients in the Columbia River coastal margin.
PloS one 2010;5(10):e13312.
2010: Michiko M Nakano; Ann Lin; Cole S Zuber; Kate J Newberry; Richard G Brennan; Peter Zuber
Promoter recognition by a complex of Spx and the C-terminal domain of the RNA polymerase alpha subunit.
PloS one 2010;5(1):e8664.
2009: Saurabh Garg; Sushma Kommineni; Luke Henslee; Ying Zhang; Peter Zuber
The YjbH protein of Bacillus subtilis enhances ClpXP-catalyzed proteolysis of Spx.
Journal of bacteriology 2009;191(4):1268-77.
2009: Peter Zuber
Management of oxidative stress in Bacillus.
Annual review of microbiology 2009;63():575-97.
2008: Dindo Y Reyes; Peter Zuber
Activation of transcription initiation by Spx: formation of transcription complex and identification of a Cis-acting element required for transcriptional activation.
Molecular microbiology 2008;69(3):765-79.
2008: Montira Leelakriangsak; Nguyen Thi Thu Huyen; Stefanie Töwe; Van Duy Nguyen; Dörte Becher; Michael Hecker; Haike Antelmann; Peter Zuber
Regulation of quinone detoxification by the thiol stress sensing DUF24/MarR-like repressor, YodB in Bacillus subtilis.
Molecular microbiology 2008;67(5):1108-24.
2008: Haike Antelmann; Michael Hecker; Peter Zuber
Proteomic signatures uncover thiol-specific electrophile resistance mechanisms in Bacillus subtilis.
Expert review of proteomics 2008;5(1):77-90.
2007: Yueping Zhang; Peter Zuber
Requirement of the zinc-binding domain of ClpX for Spx proteolysis in Bacillus subtilis and effects of disulfide stress on ClpXP activity.
Journal of bacteriology 2007;189(21):7669-80.
2007: Stefanie Töwe; Montira Leelakriangsak; Kazuo Kobayashi; Van Duy Nguyen; Michael Hecker; Peter Zuber; Haike Antelmann
The MarR-type repressor MhqR (YkvE) regulates multiple dioxygenases/glyoxalases and an azoreductase which confer resistance to 2-methylhydroquinone and catechol in Bacillus subtilis.
Molecular microbiology 2007;66(1):40-54.
2007: Montira Leelakriangsak; Peter Zuber
Transcription from the P3 promoter of the Bacillus subtilis spx gene is induced in response to disulfide stress.
Journal of bacteriology 2007;189(5):1727-35.
2007: Montira Leelakriangsak; Kazuo Kobayashi; Peter Zuber
Dual negative control of spx transcription initiation from the P3 promoter by repressors PerR and YodB in Bacillus subtilis.
Journal of bacteriology 2007;189(5):1736-44.
2007: Hao Geng; Peter Zuber; Michiko M Nakano
Regulation of respiratory genes by ResD-ResE signal transduction system in Bacillus subtilis.
Methods in enzymology 2007;422():448-64.
2006: Soon-Yong Choi; Dindo Reyes; Montira Leelakriangsak; Peter Zuber
The global regulator Spx functions in the control of organosulfur metabolism in Bacillus subtilis.
Journal of bacteriology 2006;188(16):5741-51.
2006: Ying Zhang; Shunji Nakano; Soon-Yong Choi; Peter Zuber
Mutational analysis of the Bacillus subtilis RNA polymerase alpha C-terminal domain supports the interference model of Spx-dependent repression.
Journal of bacteriology 2006;188(12):4300-11.
2005: Kate J Newberry; Shunji Nakano; Peter Zuber; Richard G Brennan
Crystal structure of the Bacillus subtilis anti-alpha, global transcriptional regulator, Spx, in complex with the alpha C-terminal domain of RNA polymerase.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(44):15839-44.
2005: Richard B Weart; Shunji Nakano; Brooke E Lane; Peter Zuber; Petra Anne Levin
The ClpX chaperone modulates assembly of the tubulin-like protein FtsZ.
Molecular microbiology 2005;57(1):238-49.
2005: Kyle N Erwin; Shunji Nakano; Peter Zuber
Sulfate-dependent repression of genes that function in organosulfur metabolism in Bacillus subtilis requires Spx.
Journal of bacteriology 2005;187(12):4042-9.
2005: Shunji Nakano; Kyle N Erwin; Martina Ralle; Peter Zuber
Redox-sensitive transcriptional control by a thiol/disulphide switch in the global regulator, Spx.
Molecular microbiology 2005;55(2):498-510.
2004: Peter Zuber
Spx-RNA polymerase interaction and global transcriptional control during oxidative stress.
Journal of bacteriology 2004;186(7):1911-8.
2004: Karen E Kawulka; Tara Sprules; Christopher M Diaper; Randy M Whittal; Ryan T McKay; Pascal Mercier; Peter Zuber; John C Vederas
Structure of subtilosin A, a cyclic antimicrobial peptide from Bacillus subtilis with unusual sulfur to alpha-carbon cross-links: formation and reduction of alpha-thio-alpha-amino acid derivatives.
Biochemistry 2004;43(12):3385-95.
2003: Shunji Nakano; Elke Küster-Schöck; Alan D Grossman; Peter Zuber
Spx-dependent global transcriptional control is induced by thiol-specific oxidative stress in Bacillus subtilis.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(23):13603-8.
2003: Karen E Kawulka; Tara Sprules; Ryan T McKay; Pascal Mercier; Christopher M Diaper; Peter Zuber; John C Vederas
Structure of subtilosin A, an antimicrobial peptide from Bacillus subtilis with unusual posttranslational modifications linking cysteine sulfurs to alpha-carbons of phenylalanine and threonine.
Journal of the American Chemical Society 2003;125(16):4726-7.
2003: Shunji Nakano; Michiko M Nakano; Ying Zhang; Montira Leelakriangsak; Peter Zuber
A regulatory protein that interferes with activator-stimulated transcription in bacteria.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(7):4233-8.
2002: Peter Zuber
Control of gene expression in Gram-positive bacteria: extensions of and departures from enteric paradigms.
Frontiers in bioscience : a journal and virtual library 2002;7():d1857-66.
2002: Shunji Nakano; Guolu Zheng; Michiko M Nakano; Peter Zuber
Multiple pathways of Spx (YjbD) proteolysis in Bacillus subtilis.
Journal of bacteriology 2002;184(13):3664-70.
2002: Michiko M Nakano; Shunji Nakano; Peter Zuber
Spx (YjbD), a negative effector of competence in Bacillus subtilis, enhances ClpC-MecA-ComK interaction.
Molecular microbiology 2002;44(5):1341-9.
2001: Michiko M Nakano; F Hajarizadeh; Yunyan Zhu; Peter Zuber
Loss-of-function mutations in yjbD result in ClpX- and ClpP-independent competence development of Bacillus subtilis.
Molecular microbiology 2001;42(2):383-94.
2001: Peter Zuber
A peptide profile of the Bacillus subtilis genome.
Peptides 2001;22(10):1555-77.
2000: Peter Zuber
Specificity through flexibility.
Nature structural biology 2000;7(12):1079-81.
2000: J Liu; Peter Zuber
The ClpX protein of Bacillus subtilis indirectly influences RNA polymerase holoenzyme composition and directly stimulates sigma-dependent transcription.
Molecular microbiology 2000;37(4):885-97.
2000: Michiko M Nakano; Yunyan Zhu; J Liu; D Y Reyes; H Yoshikawa; Peter Zuber
Mutations conferring amino acid residue substitutions in the carboxy-terminal domain of RNA polymerase alpha can suppress clpX and clpP with respect to developmentally regulated transcription in Bacillus subtilis.
Molecular microbiology 2000;37(4):869-84.
2000: Michiko M Nakano; G Zheng; Peter Zuber
Dual control of sbo-alb operon expression by the Spo0 and ResDE systems of signal transduction under anaerobic conditions in Bacillus subtilis.
Journal of bacteriology 2000;182(11):3274-7.
2000: Guolu Zheng; R Hehn; Peter Zuber
Mutational analysis of the sbo-alb locus of Bacillus subtilis: identification of genes required for subtilosin production and immunity.
Journal of bacteriology 2000;182(11):3266-73.
1999: Guolu Zheng; LZ Yan; John C Vederas; Peter Zuber
Genes of the sbo-alb locus of Bacillus subtilis are required for production of the antilisterial bacteriocin subtilosin.
Journal of bacteriology 1999;181(23):7346-55.
1999: Michiko M Nakano; Y Zhu; K Haga; H Yoshikawa; Abraham L Sonenshein; Peter Zuber
A mutation in the 3-phosphoglycerate kinase gene allows anaerobic growth of Bacillus subtilis in the absence of ResE kinase.
Journal of bacteriology 1999;181(22):7087-97.
1999: J Liu; WM Cosby; Peter Zuber
Role of lon and ClpX in the post-translational regulation of a sigma subunit of RNA polymerase required for cellular differentiation in Bacillus subtilis.
Molecular microbiology 1999;33(2):415-28.
1999: M Ogura; L Liu; M LaCelle; Michiko M Nakano; Peter Zuber
Mutational analysis of ComS: evidence for the interaction of ComS and MecA in the regulation of competence development in Bacillus subtilis.
Molecular microbiology 1999;32(4):799-812.
1998: J Liu; Peter Zuber
A molecular switch controlling competence and motility: competence regulatory factors ComS, MecA, and ComK control sigmaD-dependent gene expression in Bacillus subtilis.
Journal of bacteriology 1998;180(16):4243-51.
1998: Michiko M Nakano; Peter Zuber; Abraham L Sonenshein
Anaerobic regulation of Bacillus subtilis Krebs cycle genes.
Journal of bacteriology 1998;180(13):3304-11.
1998: WM Cosby; D Vollenbroich; O H Lee; Peter Zuber
Altered srf expression in Bacillus subtilis resulting from changes in culture pH is dependent on the Spo0K oligopeptide permease and the ComQX system of extracellular control.
Journal of bacteriology 1998;180(6):1438-45.
1998: LE Quadri; Paul H Weinreb; Ming Lei; Michiko M Nakano; Peter Zuber; Christopher T Walsh
Characterization of Sfp, a Bacillus subtilis phosphopantetheinyl transferase for peptidyl carrier protein domains in peptide synthetases.
Biochemistry 1998;37(6):1585-95.
1998: Paul H Weinreb; LE Quadri; Christopher T Walsh; Peter Zuber
Stoichiometry and specificity of in vitro phosphopantetheinylation and aminoacylation of the valine-activating module of surfactin synthetase.
Biochemistry 1998;37(6):1575-84.
1998: Michiko M Nakano; Peter Zuber
Anaerobic growth of a "strict aerobe" (Bacillus subtilis).
Annual review of microbiology 1998;52():165-90.
1997: WM Cosby; Peter Zuber
Regulation of Bacillus subtilis sigmaH (spo0H) and AbrB in response to changes in external pH.
Journal of bacteriology 1997;179(21):6778-87.
1997: Michiko M Nakano; YP Dailly; Peter Zuber; D P Clark
Characterization of anaerobic fermentative growth of Bacillus subtilis: identification of fermentation end products and genes required for growth.
Journal of bacteriology 1997;179(21):6749-55.
1997: Joachim Vater; Torsten Stein; D Vollenbroich; V Kruft; B Wittmann-Liebold; Peter Franke; L Liu; Peter Zuber
The modular organization of multifunctional peptide synthetases.
Journal of protein chemistry 1997;16(5):557-64.
1996: R H Lambalot; AM Gehring; R S Flugel; Peter Zuber; M LaCelle; Mohamed A Marahiel; R Reid; Chaitan Khosla; Christopher T Walsh
A new enzyme superfamily - the phosphopantetheinyl transferases.
Chemistry & biology 1996;3(11):923-36.
1996: L Liu; Michiko M Nakano; O H Lee; Peter Zuber
Plasmid-amplified comS enhances genetic competence and suppresses sinR in Bacillus subtilis.
Journal of bacteriology 1996;178(17):5144-52.
1996: M LaCelle; M Kumano; K Kurita; Kunio Yamane; Peter Zuber; Michiko M Nakano
Oxygen-controlled regulation of the flavohemoglobin gene in Bacillus subtilis.
Journal of bacteriology 1996;178(13):3803-8.
1996: Michiko M Nakano; Peter Zuber; P Glaser; Antoine Danchin; F M Hulett
Two-component regulatory proteins ResD-ResE are required for transcriptional activation of fnr upon oxygen limitation in Bacillus subtilis.
Journal of bacteriology 1996;178(13):3796-802.
1995: C D'Souza; Michiko M Nakano; D L Frisby; Peter Zuber
Translation of the open reading frame encoded by comS, a gene of the srf operon, is necessary for the development of genetic competence, but not surfactin biosynthesis, in Bacillus subtilis.
Journal of bacteriology 1995;177(14):4144-8.
1995: K Ogawa; E Akagawa; Kunio Yamane; Z W Sun; M LaCelle; Peter Zuber; Michiko M Nakano
The nasB operon and nasA gene are required for nitrate/nitrite assimilation in Bacillus subtilis.
Journal of bacteriology 1995;177(5):1409-13.
1995: Philippe Glaser; Antoine Danchin; Frank Kunst; Peter Zuber; Michiko M Nakano
Identification and isolation of a gene required for nitrate assimilation and anaerobic growth of Bacillus subtilis.
Journal of bacteriology 1995;177(4):1112-5.
1995: Michiko M Nakano; F Yang; P Hardin; Peter Zuber
Nitrogen regulation of nasA and the nasB operon, which encode genes required for nitrate assimilation in Bacillus subtilis.
Journal of bacteriology 1995;177(3):573-9.
1994: C D'Souza; Michiko M Nakano; Peter Zuber
Identification of comS, a gene of the srfA operon that regulates the establishment of genetic competence in Bacillus subtilis.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(20):9397-401.
1994: D Frisby; Peter Zuber
Mutations in pts cause catabolite-resistant sporulation and altered regulation of spo0H in Bacillus subtilis.
Journal of bacteriology 1994;176(9):2587-95.
1994: D Vollenbroich; N Mehta; Peter Zuber; Joachim Vater; R M Kamp
Analysis of surfactin synthetase subunits in srfA mutants of Bacillus subtilis OKB105.
Journal of bacteriology 1994;176(2):395-400.
1993: K Schröder; Peter Zuber; G Willimsky; B Wagner; Mohamed A Marahiel
Mapping of the Bacillus subtilis cspB gene and cloning of its homologs in thermophilic, mesophilic and psychrotrophic bacilli.
Gene 1993;136(1-2):277-80.
1993: D Vollenbroich; B Kluge; C D'Souza; Peter Zuber; Joachim Vater
Analysis of a mutant amino acid-activating domain of surfactin synthetase bearing a serine-to-alanine substitution at the site of carboxylthioester formation.
FEBS letters 1993;325(3):220-4.
1993: C D'Souza; Michiko M Nakano; N Corbell; Peter Zuber
Amino-acylation site mutations in amino acid-activating domains of surfactin synthetase: effects on surfactin production and competence development in Bacillus subtilis.
Journal of bacteriology 1993;175(11):3502-10.
1993: Michiko M Nakano; Peter Zuber
Mutational analysis of the regulatory region of the srfA operon in Bacillus subtilis.
Journal of bacteriology 1993;175(10):3188-91.
1993: Mohamed A Marahiel; Michiko M Nakano; Peter Zuber
Regulation of peptide antibiotic production in Bacillus.
Molecular microbiology 1993;7(5):631-6.
1993: S Fuma; Y Fujishima; N Corbell; C D'Souza; Michiko M Nakano; Peter Zuber; Kunio Yamane
Nucleotide sequence of 5' portion of srfA that contains the region required for competence establishment in Bacillus subtilus.
Nucleic acids research 1993;21(1):93-7.
1992: Michiko M Nakano; N Corbell; J Besson; Peter Zuber
Isolation and characterization of sfp: a gene that functions in the production of the lipopeptide biosurfactant, surfactin, in Bacillus subtilis.
Molecular & general genetics : MGG 1992;232(2):313-21.
1991: D Frisby; Peter Zuber
Analysis of the upstream activating sequence and site of carbon and nitrogen source repression in the promoter of an early-induced sporulation gene of Bacillus subtilis.
Journal of bacteriology 1991;173(23):7557-64.
1991: Peter Zuber
Non-ribosomal peptide synthesis.
Current opinion in cell biology 1991;3(6):1046-50.
1991: Michiko M Nakano; Peter Zuber
The primary role of comA in establishment of the competent state in Bacillus subtilis is to activate expression of srfA.
Journal of bacteriology 1991;173(22):7269-74.
1991: Michiko M Nakano; L A Xia; Peter Zuber
Transcription initiation region of the srfA operon, which is controlled by the comP-comA signal transduction system in Bacillus subtilis.
Journal of bacteriology 1991;173(17):5487-93.
1991: R Fürbass; M Gocht; Peter Zuber; Mohamed A Marahiel
Interaction of AbrB, a transcriptional regulator from Bacillus subtilis with the promoters of the transition state-activated genes tycA and spoVG.
Molecular & general genetics : MGG 1991;225(3):347-54.
1991: Michiko M Nakano; R Magnuson; A Myers; J Curry; Alan D Grossman; Peter Zuber
srfA is an operon required for surfactin production, competence development, and efficient sporulation in Bacillus subtilis.
Journal of bacteriology 1991;173(5):1770-8.
1990: D Daniels; Peter Zuber; Richard Losick
Two amino acids in an RNA polymerase sigma factor involved in the recognition of adjacent base pairs in the -10 region of a cognate promoter.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(20):8075-9.
1990: Michiko M Nakano; Peter Zuber
Molecular biology of antibiotic production in Bacillus.
Critical reviews in biotechnology 1990;10(3):223-40.
1989: J B Robertson; M Gocht; Mohamed A Marahiel; Peter Zuber
AbrB, a regulator of gene expression in Bacillus, interacts with the transcription initiation regions of a sporulation gene and an antibiotic biosynthesis gene.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(21):8457-61.
1989: Michiko M Nakano; Peter Zuber
Cloning and characterization of srfB, a regulatory gene involved in surfactin production and competence in Bacillus subtilis.
Journal of bacteriology 1989;171(10):5347-53.
1989: Peter Zuber; J Healy; H L Carter; Simon M Cutting; Charles P Moran; Richard Losick
Mutation changing the specificity of an RNA polymerase sigma factor.
Journal of molecular biology 1989;206(4):605-14.
1988: Michiko M Nakano; Mohamed A Marahiel; Peter Zuber
Identification of a genetic locus required for biosynthesis of the lipopeptide antibiotic surfactin in Bacillus subtilis.
Journal of bacteriology 1988;170(12):5662-8.
1987: M A Marahiel; Peter Zuber; G Czekay; R Losick
Identification of the promoter for a peptide antibiotic biosynthesis gene from Bacillus brevis and its regulation in Bacillus subtilis.
Journal of bacteriology 1987;169(5):2215-22.
1987: Peter Zuber; R Losick
Role of AbrB in Spo0A- and Spo0B-dependent utilization of a sporulation promoter in Bacillus subtilis.
Journal of bacteriology 1987;169(5):2223-30.
1987: Peter Zuber; J M Healy; R Losick
Effects of plasmid propagation of a sporulation promoter on promoter utilization and sporulation in Bacillus subtilis.
Journal of bacteriology 1987;169(2):461-9.
1985: Peter Zuber; R Losick
spoOH: a developmental regulatory gene for promoter utilization in Bacillus subtilis.
Cold Spring Harbor symposia on quantitative biology 1985;50():483-8.
1983: Peter Zuber; R Losick
Use of a lacZ fusion to study the role of the spoO genes of Bacillus subtilis in developmental regulation.
Cell 1983;35(1):275-83.