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Boris Zybailov

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Peter K Lundquist; Anton Poliakov; Qi Sun; Nazmul H Bhuiyan; Boris Zybailov; Klaas J van Wijk
The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
Boris Zybailov; Qi Sun; Klaas J van Wijk
Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library.
Boris Zybailov; Giulia Friso; Jitae Kim; Andrea Rudella; Verenice Ramírez Rodríguez; Yukari Asakura; Qi Sun; Klaas J van Wijk
Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.

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All Publications

2012: Peter K Lundquist; Anton Poliakov; Qi Sun; Nazmul H Bhuiyan; Boris Zybailov; Klaas J van Wijk
The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.
Plant physiology 2012;158(3):1172-92.
2009: Boris Zybailov; Qi Sun; Klaas J van Wijk
Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library.
Analytical chemistry 2009;81(19):8015-24.
2009: Boris Zybailov; Giulia Friso; Jitae Kim; Andrea Rudella; Verenice Ramírez Rodríguez; Yukari Asakura; Qi Sun; Klaas J van Wijk
Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.
Molecular & cellular proteomics : MCP 2009;8(8):1789-1810.
2009: Jitae Kim; Andrea Rudella; Verenice Ramirez Rodriguez; Boris Zybailov; Paul Dominic B Olinares; Klaas J van Wijk
Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.
The Plant cell 2009;21(6):1669-92.
2008: Wojciech Majeran; Boris Zybailov; A Jimmy Ytterberg; Jason Dunsmore; Qi Sun; Klaas J van Wijk
Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells.
Molecular & cellular proteomics : MCP 2008;7(9):1609-38.
2008: Boris Zybailov; Heidi Rutschow; Giulia Friso; Andrea Rudella; Olof Emanuelsson; Qi Sun; Klaas J van Wijk
Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.
PloS one 2008;3(4):e1994.
2007: Xinguo Chen; Elisabeth J Wurtmann; Jason Van Batavia; Boris Zybailov; Michael Washburn; Sandra L Wolin
An ortholog of the Ro autoantigen functions in 23S rRNA maturation in D. radiodurans.
Genes & development 2007;21(11):1328-39.
2007: Boris Zybailov; Laurence Florens; Michael Washburn
Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors.
Molecular bioSystems 2007;3(5):354-60.
2006: Boris Zybailov; Amber L Mosley; Mihaela E Sardiu; Michael K Coleman; Laurence Florens; Michael Washburn
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae.
Journal of proteome research 2006;5(9):2339-47.
2005: Boris Zybailov; Michael K Coleman; Laurence Florens; Michael Washburn
Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling.
Analytical chemistry 2005;77(19):6218-24.
2005: Yumiko Sakuragi; Boris Zybailov; Gaozhong Shen; Donald A Bryant; John H Golbeck; Bruce A Diner; Irina Karygina; Yulia N Pushkar; Dietmar Stehlik
Recruitment of a foreign quinone into the A1 site of photosystem I. Characterization of a menB rubA double deletion mutant in Synechococcus sp. PCC 7002 devoid of FX, FA, and FB and containing plastoquinone or exchanged 9,10-anthraquinone.
The Journal of biological chemistry 2005;280(13):12371-81.
2004: Andrew C Paoletti; Boris Zybailov; Michael Washburn
Principles and applications of multidimensional protein identification technology.
Expert review of proteomics 2004;1(3):275-82.
2004: Shigeo Sato; Chieri Tomomori-Sato; Tari J Parmely; Laurence Florens; Boris Zybailov; Selene K Swanson; Charles A S Banks; Jingji Jin; Yong Cai; Michael Washburn; Joan Weliky Conaway; Ronald C Conaway
A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology.
Molecular cell 2004;14(5):685-91.
2004: Chieri Tomomori-Sato; Shigeo Sato; Tari J Parmely; Charles A S Banks; Irina Sorokina; Laurence Florens; Boris Zybailov; Michael Washburn; Christopher S Brower; Ronald C Conaway; Joan Weliky Conaway
A mammalian mediator subunit that shares properties with Saccharomyces cerevisiae mediator subunit Cse2.
The Journal of biological chemistry 2004;279(7):5846-51.
2003: Wu Xu; Parag Chitnis; Alfia I Valieva; Art van der Est; Klaus Brettel; Mariana Guergova-Kuras; Yulia N Pushkar; Stephan G Zech; Dietmar Stehlik; Gaozhong Shen; Boris Zybailov; John H Golbeck
Electron transfer in cyanobacterial photosystem I: II. Determination of forward electron transfer rates of site-directed mutants in a putative electron transfer pathway from A0 through A1 to FX.
The Journal of biological chemistry 2003;278(30):27876-87.
2003: Wu Xu; Parag Chitnis; Alfia I Valieva; Art van der Est; Yulia N Pushkar; Maciej Krzystyniak; Christian Teutloff; Stephan G Zech; Robert Bittl; Dietmar Stehlik; Boris Zybailov; Gaozhong Shen; John H Golbeck
Electron transfer in cyanobacterial photosystem I: I. Physiological and spectroscopic characterization of site-directed mutants in a putative electron transfer pathway from A0 through A1 to FX.
The Journal of biological chemistry 2003;278(30):27864-75.
2003: T Wade Johnson; Sushma Naithani; Charles Stewart; Boris Zybailov; A Daniel Jones; John H Golbeck; Parag Chitnis
The menD and menE homologs code for 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylate synthase and O-succinylbenzoic acid-CoA synthase in the phylloquinone biosynthetic pathway of Synechocystis sp. PCC 6803.
Biochimica et biophysica acta 2003;1557(1-3):67-76.
2002: Vladimir P Shinkarev; Boris Zybailov; Ilya R Vassiliev; John H Golbeck
Modeling of the P700+ charge recombination kinetics with phylloquinone and plastoquinone-9 in the A1 site of photosystem I.
Biophysical journal 2002;83(6):2885-97.
2002: Yumiko Sakuragi; Boris Zybailov; Gaozhong Shen; A Daniel Jones; Parag Chitnis; Art van der Est; Robert Bittl; Stephan G Zech; Dietmar Stehlik; John H Golbeck; Donald A Bryant
Insertional inactivation of the menG gene, encoding 2-phytyl-1,4-naphthoquinone methyltransferase of Synechocystis sp. PCC 6803, results in the incorporation of 2-phytyl-1,4-naphthoquinone into the A(1) site and alteration of the equilibrium constant between A(1) and F(X) in photosystem I.
Biochemistry 2002;41(1):394-405.
2001: TW Johnson; Boris Zybailov; A Daniel Jones; Robert Bittl; Stephan G Zech; Dietmar Stehlik; John H Golbeck; Parag Chitnis
Recruitment of a foreign quinone into the A1 site of photosystem I. In vivo replacement of plastoquinone-9 by media-supplemented naphthoquinones in phylloquinone biosynthetic pathway mutants of Synechocystis sp. PCC 6803.
The Journal of biological chemistry 2001;276(43):39512-21.
2001: Elena V Vassilieva; Mikhail L Antonkine; Boris Zybailov; F Yang; C U Jakobs; John H Golbeck; Donald A Bryant
Electron transfer may occur in the chlorosome envelope: the CsmI and CsmJ proteins of chlorosomes are 2Fe-2S ferredoxins.
Biochemistry 2001;40(2):464-73.
2000: Alexey Yu Semenov; Ilya R Vassiliev; Art van der Est; Mahir D Mamedov; Boris Zybailov; G Shen; Dietmar Stehlik; Bruce A Diner; Parag Chitnis; John H Golbeck
Recruitment of a foreign quinone into the A1 site of photosystem I. Altered kinetics of electron transfer in phylloquinone biosynthetic pathway mutants studied by time-resolved optical, EPR, and electrometric techniques.
The Journal of biological chemistry 2000;275(31):23429-38.
2000: Boris Zybailov; Art van der Est; Stephan G Zech; Christian Teutloff; TW Johnson; Gaozhong Shen; Robert Bittl; Dietmar Stehlik; Parag Chitnis; John H Golbeck
Recruitment of a foreign quinone into the A(1) site of photosystem I. II. Structural and functional characterization of phylloquinone biosynthetic pathway mutants by electron paramagnetic resonance and electron-nuclear double resonance spectroscopy.
The Journal of biological chemistry 2000;275(12):8531-9.
2000: TW Johnson; Gaozhong Shen; Boris Zybailov; D Kolling; R Reategui; S Beauparlant; Ilya R Vassiliev; Donald A Bryant; A Daniel Jones; John H Golbeck; Parag Chitnis
Recruitment of a foreign quinone into the A(1) site of photosystem I. I. Genetic and physiological characterization of phylloquinone biosynthetic pathway mutants in Synechocystis sp. pcc 6803.
The Journal of biological chemistry 2000;275(12):8523-30.
1998: B Kjaer; N U Frigaard; F Yang; Boris Zybailov; M Miller; John H Golbeck; Henrik Vibe Scheller
Menaquinone-7 in the reaction center complex of the green sulfur bacterium Chlorobium vibrioforme functions as the electron acceptor A1.
Biochemistry 1998;37(10):3237-42.