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Jennifer Wortman

Research Profile

Procedures

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Genes & Molecular Sequences

Physiology

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Aspergillus fumigatus

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Yonatan H Grad; Allison Griggs; Brian J Haas; Edouard Bingen; Gustavo C Cerquiera; Paul Godfrey; Malika Gouali; Marc Lipsitch; Patricia Mariani-Kurkdjian; Terrence P Shea; Matthew K Waldor; François-Xavier Weill; Jennifer Wortman; Sarah Young; Qiandong Zeng; William P Hanage
Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen.
Yonatan H Grad; Allison D Griggs; Brian J Haas; Edouard Bingen; Bruce W Birren; Michael FitzGerald; Antje Flieger; Deborah T Hung; Karen A Krogfelt; Eric S Lander; Marc Lipsitch; Caryn McCowan; Anna Montmayeur; Chad Nusbaum; Terrance P Shea; Erhard Tietze; François-Xavier Weill; Jennifer Wortman; William P Hanage
Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany.
Yonatan H Grad; Sharvari Gujja; Brian J Haas; Amr Abouelleil; Harindra M Arachchi; Edouard Bingen; Bruce W Birren; James Bochicchio; Gustavo C Cerqueira; Sara Chauvin; Timothy Desmet; Michael Feldgarden; Michael Fitzgerald; Jakob Frimodt-Møller; Paul Godfrey; Deborah T Hung; Karen A Krogfelt; Eric S Lander; Marc Lipsitch; Caryn McCowan; Anna Montmayeur; Cheryl I Murphy; Chad Nusbaum; Andreas M Petersen; Carsten Russ; Scott Steelman; Carsten Struve; Sean Sykes; Bruce J Walker; François-Xavier Weill; Jennifer Wortman; Sarah Young; Qiandong Zeng; William P Hanage
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

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All Publications

2013: Yonatan H Grad; Allison Griggs; Brian J Haas; Edouard Bingen; Gustavo C Cerquiera; Paul Godfrey; Malika Gouali; Marc Lipsitch; Patricia Mariani-Kurkdjian; Terrence P Shea; Matthew K Waldor; François-Xavier Weill; Jennifer Wortman; Sarah Young; Qiandong Zeng; William P Hanage
Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen.
mBio 2013;4(1):e00452-12.
2012: Yonatan H Grad; Allison D Griggs; Brian J Haas; Edouard Bingen; Bruce W Birren; Michael FitzGerald; Antje Flieger; Deborah T Hung; Karen A Krogfelt; Eric S Lander; Marc Lipsitch; Caryn McCowan; Anna Montmayeur; Chad Nusbaum; Terrance P Shea; Erhard Tietze; François-Xavier Weill; Jennifer Wortman; William P Hanage
Reply to Guy et al.: Support for a bottleneck in the 2011 Escherichia coli O104:H4 outbreak in Germany.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(52):E3629-30.
2012: Yonatan H Grad; Sharvari Gujja; Brian J Haas; Amr Abouelleil; Harindra M Arachchi; Edouard Bingen; Bruce W Birren; James Bochicchio; Gustavo C Cerqueira; Sara Chauvin; Timothy Desmet; Michael Feldgarden; Michael Fitzgerald; Jakob Frimodt-Møller; Paul Godfrey; Deborah T Hung; Karen A Krogfelt; Eric S Lander; Marc Lipsitch; Caryn McCowan; Anna Montmayeur; Cheryl I Murphy; Chad Nusbaum; Andreas M Petersen; Carsten Russ; Scott Steelman; Carsten Struve; Sean Sykes; Bruce J Walker; François-Xavier Weill; Jennifer Wortman; Sarah Young; Qiandong Zeng; William P Hanage
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(8):3065-70.
2012: Veronica N Kos; Trevor Lawley; Emmanuel F Mongodin; Kelli L Palmer; Andries Van Tonder; Jennifer Wortman; Bruce Birren; Kip Bodi; Gustavo Cerqueira; Christopher A Desjardins; Michael Feldgarden; Steven R Gill; Paul Godfrey; Allison Griggs; Brian J Haas; Matthew T G Holden; Michael S Gilmore
Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.
mBio 2012;3(3):.
2012: Kelli L Palmer; Suzanne Walker; Jennifer Wortman; Jeremy Zucker; Bruce Birren; Gustavo Cerqueira; Christopher Desjardins; Michael Feldgarden; Dirk Gevers; Paul Godfrey; Allison Griggs; Brian Haas; Veronica N Kos; Michael S Gilmore
Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus.
mBio 2012;3(1):e00318-11.
2012: Martha B Arnaud; Stuart R Miyasato; Jonathan Crabtree; Prachi Shah; Clinton Howarth; Gustavo C Cerqueira; Jonathan Binkley; Matt Simison; Farrell Wymore; Diane O Inglis; Marcus Chibucos; Gail Binkley; Joshua Orvis; Gavin Sherlock; Marek S Skrzypek; Jennifer Wortman
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic acids research 2012;40(Database issue):D653-9.
2011: Pelin Yilmaz; Linda Amaral-Zettler; Manimozhiyan Arumugam; Susanna Assunta-Sansone; Mark Bailey; Laura Baumgartner; Bruce W Birren; Martin J Blaser; Vivien Bonazzi; Tim Booth; Peer Bork; Frederic D Bushman; Pier Luigi Buttigieg; Patrick S G Chain; Emily Charlson; Guy Cochrane; James R Cole; Elizabeth K Costello; Peter Dawyndt; Todd DeSantis; Dawn Field; Noah Fierer; Jed A Fuhrman; Rachel E Gallery; Dirk Gevers; Richard A Gibbs; Jack A Gilbert; Antonio Gonzalez; Jeffrey I Gordon; Robert Guralnick; Wolfgang Hankeln; Sarah Highlander; Philip Hugenholtz; Christopher Hunter; Heather Huot-Creasy; Janet Jansson; Anjanette Johnston; Ilene Karsch-Mizrachi; Andrew L Kau; Scott T Kelley; Jerry Kennedy; Rob Knight; Dan Knights; Omry Koren; Renzo Kottmann; Justin Kuczynski; Nikos Kyrpides; Robert Larsen; Christian L Lauber; Teresa Legg; Ruth E Ley; Catherine A Lozupone; Wolfgang Ludwig; Donna Lyons; Eamonn Maguire; Barbara A Methé; Folker Meyer; Norman Morrison; Brian Muegge; Sara Nakielny; Karen E Nelson; Diana Nemergut; Josh D Neufeld; Lindsay K Newbold; Anna E Oliver; Norman R Pace; Giriprakash Palanisamy; Joonhong Park; Jörg Peplies; Joseph Petrosino; Lita Proctor; Elmar Pruesse; Christian Quast; Jeroen Raes; Sujeevan Ratnasingham; Jacques Ravel; David A Relman; Philippe Rocca-Serra; Inigo San Gil; Patrick D Schloss; Lynn M Schriml; Rohini Sinha; Michelle I Smith; Erica Sodergren; Aymé Spo; Peter Sterk; Jesse Stombaugh; James M Tiedje; Robert Vaughan; Doyle V Ward; George M Weinstock; Doug Wendel; Owen R White; Andrew Whiteley; Andreas Wilke; Jennifer Wortman; Tanya Yatsunenko; Frank Oliver Glöckner
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nature biotechnology 2011;29(5):415-20.
2011: Kevin Galens; Samuel V Angiuoli; Heather H Creasy; Sean Daugherty; Anup Mahurkar; Joshua Orvis; Owen R White; Jennifer Wortman; Michelle G Giglio
The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.
Standards in genomic sciences 2011;4(2):244-51.
2011: Benjamin M Nitsche; Arthur F J Ram; Gustavo C Cerqueira; Jonathan Crabtree; Vera Meyer; Jennifer Wortman
New resources for functional analysis of omics data for the genus Aspergillus.
BMC genomics 2011;12():486.
2010: Peter Arensburger; Karine Megy; Robert Waterhouse; Jenica Abrudan; Paolo Amedeo; Beatriz Antelo; Lyric Bartholomay; Shelby Bidwell; Elisabet Caler; Francisco Camara; Corey L Campbell; Kathryn S Campbell; Claudio Casola; Marta T Castro; Ishwar Chandramouliswaran; Sinéad B Chapman; Scott Christley; Javier Costas; Eric Eisenstadt; Cedric Feschotte; Claire M Fraser-Liggett; Roderic Guigo; Brian Haas; Martin Hammond; Bill S Hansson; Janet Hemingway; Sharon R Hill; Clint Howarth; Rickard Ignell; Ryan C Kennedy; Chinnappa D Kodira; Neil F Lobo; Chunhong Mao; George Mayhew; Kristin Michel; Akio Mori; Nannan Liu; Horacio Naveira; Vishvanath Nene; Nam Nguyen; Matthew D Pearson; Ellen J Pritham; Daniela Puiu; Yumin Qi; Hilary Ranson; Jose M C Ribeiro; Hugh M Roberston; David W Severson; Martin Shumway; Mario Stanke; Robert L Strausberg; Cheng Sun; Granger Sutton; Zhijian Jake Tu; Jose Manuel C Tubio; Maria F Unger; Dana L Vanlandingham; Albert J Vilella; Owen R White; Jared R White; Charles S Wondji; Jennifer Wortman; Evgeny M Zdobnov; Bruce Birren; Bruce M Christensen; Frank H Collins; Anthony Cornel; George Dimopoulos; Linda I Hannick; Stephen Higgs; Gregory C Lanzaro; Daniel Lawson; Norman H Lee; Marc A T Muskavitch; Alexander S Raikhel; Peter W Atkinson
Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics.
Science (New York, N.Y.) 2010;330(6000):86-8.
2010: Agnes P Chan; Jonathan Crabtree; Qi Zhao; Hernan Lorenzi; Joshua Orvis; Daniela Puiu; Admasu Melake-Berhan; Kristine M Jones; Julia Redman; Grace Chen; Edgar B Cahoon; Melaku Gedil; Mario Stanke; Brian J Haas; Jennifer Wortman; Claire M Fraser-Liggett; Jacques Ravel; Pablo D Rabinowicz
Draft genome sequence of the oilseed species Ricinus communis.
Nature biotechnology 2010;28(9):951-6.
2010: Joshua Orvis; Jonathan Crabtree; Kevin Galens; Aaron Gussman; Jason M Inman; Eduardo Lee; Sreenath Nampally; David Riley; Jaideep P Sundaram; Victor Felix; Brett Whitty; Anup Mahurkar; Jennifer Wortman; Owen R White; Samuel V Angiuoli
Ergatis: a web interface and scalable software system for bioinformatics workflows.
Bioinformatics (Oxford, England) 2010;26(12):1488-92.
2010: Karen E Nelson; George M Weinstock; Sarah Katherine Highlander; Kim C Worley; Heather Huot Creasy; Jennifer Wortman; Douglas B Rusch; Makedonka Mitreva; Erica Sodergren; Asif T Chinwalla; Michael Feldgarden; Dirk Gevers; Brian J Haas; Ramana Madupu; Doyle V Ward; Bruce W Birren; Richard A Gibbs; Barbara Methe; Joseph F Petrosino; Robert L Strausberg; Granger G Sutton; Owen R White; Richard K Wilson; Scott Durkin; Michelle G Giglio; Sharvari Gujja; Clint Howarth; Chinnappa D Kodira; Nikos Kyrpides; Teena Mehta; Donna M Muzny; Matthew Pearson; Kymberlie Pepin; Amrita Pati; Xiang Qin; Chandri Yandava; Qiandong Zeng; Lan Zhang; Aaron M Berlin; Lei Chen; Theresa A Hepburn; Justin Johnson; Jamison McCorrison; Jason Miller; Pat Minx; Chad Nusbaum; Carsten Russ; Sean M Sykes; Chad M Tomlinson; Sarah Young; Wesley C Warren; Jonathan Badger; Jonathan Crabtree; Victor M Markowitz; Joshua Orvis; Andrew Cree; Steve Ferriera; Lucinda L Fulton; Robert S Fulton; Marcus Gillis; Lisa D Hemphill; Vandita Joshi; Christie Kovar; Manolito Torralba; Kris A Wetterstrand; Amr Abouellleil; Aye M Wollam; Christian J Buhay; Yan Ding; Shannon Dugan; Michael G FitzGerald; Mike Holder; Jessica Hostetler; Sandra W Clifton; Emma Allen-Vercoe; Ashlee M Earl; Candace N Farmer; Konstantinos Liolios; Michael G Surette; Qiang Xu; Craig Pohl; Katarzyna Wilczek-Boney; Dianhui Zhu
A catalog of reference genomes from the human microbiome.
Science (New York, N.Y.) 2010;328(5981):994-9.
2010: Martha B Arnaud; Marcus Chibucos; Maria C Costanzo; Jonathan Crabtree; Diane O Inglis; Adil Lotia; Joshua Orvis; Prachi Shah; Marek S Skrzypek; Gail Binkley; Stuart R Miyasato; Jennifer Wortman; Gavin Sherlock
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community.
Nucleic acids research 2010;38(Database issue):D420-7.
2009: Thomas J Sharpton; Jason E Stajich; Steven D Rounsley; Malcolm J Gardner; Jennifer Wortman; Vinita S Jordar; Rama Maiti; Chinnappa D Kodira; Daniel E Neafsey; Qiandong Zeng; Chiung-Yu Hung; Cody McMahan; Anna Muszewska; Marcin Grynberg; M Alejandra Mandel; Ellen M Kellner; Bridget M Barker; John N Galgiani; Marc J Orbach; Theo N Kirkland; Garry T Cole; Matthew Henn; Bruce W Birren; John W Taylor
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives.
Genome research 2009;19(10):1722-31.
2009: Matthew Berriman; Brian J Haas; Philip T LoVerde; R Alan Wilson; Gary P Dillon; Gustavo C Cerqueira; Susan T Mashiyama; Bissan Al-Lazikani; Luiza F Andrade; Peter Ashton; Martin A Aslett; Daniella C Bartholomeu; Gaelle Blandin; Conor R Caffrey; Avril Coghlan; Richard Coulson; Tim A Day; Art Delcher; Ricardo DeMarco; Appolinaire Djikeng; Tina Eyre; John A Gamble; Elodie Ghedin; Yong Gu; Christiane Hertz-Fowler; Hirohisha Hirai; Yuriko Hirai; Robin Houston; Alasdair Ivens; David A Johnston; Daniela Lacerda; Camila D Macedo; Paul McVeigh; Zemin Ning; Guilherme Oliveira; John P Overington; Julian Parkhill; Mihaela Pertea; Raymond J Pierce; Anna V Protasio; Michael A Quail; Marie-Adèle Rajandream; Jane Rogers; Mohammed Sajid; Steven L Salzberg; Mario Stanke; Adrian R Tivey; Owen R White; David L Williams; Jennifer Wortman; Wenjie Wu; Mostafa Zamanian; Adhemar Zerlotini; Claire M Fraser-Liggett; Barclay G Barrell; Najib M El-Sayed
The genome of the blood fluke Schistosoma mansoni.
Nature 2009;460(7253):352-8.
2009: Jennifer Wortman; Jane Mabey Gilsenan; Vinita Joardar; Jennifer Deegan; John Clutterbuck; Mikael R Andersen; David Archer; Mojca Bencina; Gerhard Braus; Pedro Coutinho; Hans von Döhren; John Hugh doonan (JIC); Arnold J M Driessen; Pawel Durek; Eduardo Espeso; Erzsébet Fekete; Michel Flipphi; Carlos Garcia Estrada; Steven Geysens; Gustavo Goldman; Piet W J de Groot; Kim Hansen; Steven D Harris; Thorsten Heinekamp; Kerstin Helmstaedt; Bernard Henrissat; Gerald Hofmann; Tim Homan; Tetsuya Horio; Hiroyuki Horiuchi; Steve James; Meriel Jones; Levente Karaffa; Zsolt Karányi; Masashi Kato; Nancy Keller; Diane E Kelly; Jan A K W Kiel; Jung-Mi Kim; Ida Van der klei; Frans Klis; Andriy Kovalchuk; Nada Krasevec; Christian P Kubicek; Bo Liu; Andrew Maccabe; Vera Meyer; Pete Mirabito; Márton Miskei; Magdalena Mos; Jonathan Mullins; David Nelson; Jens Nielsen; Berl R Oakley; Stephen A Osmani; Tiina Pakula; Andrzej Paszewski; Ian Paulsen; Sebastian Pilsyk; István Pócsi; Peter J Punt; Arthur F J Ram; Qinghu Ren; Xavier Robellet; Geoff Robson; Bernhard Seiboth; Piet van Solingen; Thomas Specht; Jibin Sun; Naimeh Taheri-Talesh; Norio Takeshita; Dave Ussery; Patricia A vanKuyk; Hans Visser; Peter J I van de Vondervoort; Ronald P de Vries; Jonathan Walton; Xin Xiang; Yi Xiong; An Ping Zeng; Bernd W Brandt; Michael J Cornell; Cees A M J J van den Hondel; Jacob Visser; Stephen G Oliver; Geoffrey Turner
The 2008 update of the Aspergillus nidulans genome annotation: a community effort.
Fungal genetics and biology : FG & B 2009;46 Suppl 1():S2-13.
2009: Michael Kearns; Stephen Judd; Jinsong Tan; Jennifer Wortman
Behavioral experiments on biased voting in networks.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(5):1347-52.
2009: Gilles Fischer; Dawn Thompson; Jennifer Wortman; Cecile Fairhead
Unraveling the genomic diversity of small eukaryotes.
Genome biology 2009;10(12):318.
2008: Jane M Carlton; John H Adams; Joana Carneiro Da Silva; Shelby L Bidwell; Hernan Lorenzi; Elisabet Caler; Jonathan Crabtree; Samuel V Angiuoli; Emilio F Merino; Paolo Amedeo; Qin Cheng; Richard M R Coulson; Brendan S Crabb; Hernando A Del Portillo; Kobby Essien; Tamara V Feldblyum; Carmen Fernandez-Becerra; Paul R Gilson; Amy H Gueye; Xiang Guo; Simon Kang'a; Taco W A Kooij; Michael Korsinczky; Esmeralda V-S Meyer; Vishvanath Nene; Ian Paulsen; Owen R White; Stuart A Ralph; Qinghu Ren; Tobias J Sargeant; Steven L Salzberg; Christian J Stoeckert; Steven A Sullivan; Marcio M Yamamoto; Stephen L Hoffman; Jennifer Wortman; Malcolm J Gardner; Mary R Galinski; John W Barnwell; Claire M Fraser-Liggett
Comparative genomics of the neglected human malaria parasite Plasmodium vivax.
Nature 2008;455(7214):757-63.
2008: Marco A van den Berg; Richard Albang; Kaj Albermann; Jonathan H Badger; Jean-Marc Daran; Arnold J M Driessen; Carlos Garcia-Estrada; Natalie Fedorova Abrams; Diana M Harris; Wilbert H M Heijne; Vinita Joardar; Jan A K W Kiel; Andriy Kovalchuk; Juan F Martín; William C Nierman; Jeroen G Nijland; Jack T. Pronk; Hans Roubos; Ida Van der klei; Noël N M E van Peij; Marten Veenhuis; Hans von Döhren; Christian Wagner; Jennifer Wortman; Roel A L Bovenberg
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum.
Nature biotechnology 2008;26(10):1161-8.
2008: Natalie Fedorova Abrams; Nora Khaldi; Vinita S Joardar; Rama Maiti; Paolo Amedeo; Michael J Anderson; Jonathan Crabtree; Joana Carneiro Da Silva; Jonathan H Badger; Ahmed Albarraq; Sam Angiuoli; Howard Bussey; Paul Bowyer; Peter J Cotty; Paul S Dyer; Amy Egan; Kevin Galens; Claire M Fraser-Liggett; Brian J Haas; Jason M Inman; Richard Kent; Sebastien Lemieux; Iran Malavazi; Joshua Orvis; Terry Roemer; Catherine M Ronning; Jaideep P Sundaram; Granger Sutton; Geoff Turner; J Craig Venter; Owen R White; Brett Whitty; Phil Youngman; Kenneth H Wolfe; Gustavo H Goldman; Jennifer Wortman; Bo Jiang; David W Denning; William C Nierman
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.
PLoS genetics 2008;4(4):e1000046.
2008: Hernan Lorenzi; Mathangi Thiagarajan; Brian Haas; Jennifer Wortman; Neil Hall; Elisabet Caler
Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species.
BMC genomics 2008;9():595.
2008: Robert S Coyne; Mathangi Thiagarajan; Kristie M Jones; Jennifer Wortman; Luke J Tallon; Brian J Haas; Donna M Cassidy-Hanley; Emily A Wiley; Joshua J Smith; Kathleen Collins; Suzanne R Lee; Mary T Couvillion; Yifan Liu; Jyoti Garg; Ronald E Pearlman; Eileen P Hamilton; Eduardo Orias; Jonathan Eisen; Barbara A Methé
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure.
BMC genomics 2008;9():562.
2008: Brian J Haas; Steven L Salzberg; Wei Zhu; Mihaela Pertea; Jonathan E Allen; Joshua Orvis; Owen R White; C Robin Buell; Jennifer Wortman
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.
Genome biology 2008;9(1):R7.
2007: Kelly A Brayton; Audrey O T Lau; David R Herndon; Linda Hannick; Lowell S Kappmeyer; Shawn J Berens; Shelby L Bidwell; Wendy C Brown; Jonathan Crabtree; Doug Fadrosh; Tamara Feldblum; Heather A Forberger; Brian J Haas; Jeanne Freeman; Hoda Khouri; Hean Koo; David J Mann; Junzo Norimine; Ian Paulsen; Diana Radune; Qinghu Ren; Roger K Smith; Carlos Suarez; Owen R White; Jennifer Wortman; Donald P Knowles; Terry F McElwain; Vishvanath Nene
Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa.
PLoS pathogens 2007;3(10):1401-13.
2007: Elodie Ghedin; Shiliang Wang; David Spiro; Elisabet Caler; Qi Zhao; Jonathan Crabtree; Jonathan E Allen; Arthur L Delcher; David B Guiliano; Diego Miranda-Saavedra; Samuel V Angiuoli; Todd Creasy; Paolo Amedeo; Brian Haas; Najib M El-Sayed; Jennifer Wortman; Tamara Feldblyum; Luke Tallon; Michael Schatz; Martin Shumway; Hean Koo; Steven L Salzberg; Seth Schobel; Mihaela Pertea; Mihai Pop; Owen R White; Geoffrey J Barton; Clotilde K S Carlow; Michael J Crawford; Jennifer Daub; Matthew W Dimmic; Chris F Estes; Jeremy M Foster; Mehul Ganatra; William F Gregory; Nicholas M Johnson; Jinming Jin; Richard Komuniecki; Ian F Korf; Sanjay Kumar; Sandra Laney; Benwen Li; Wen Li; Tim H Lindblom; Sara Lustigman; Dong Ma; Claude V Maina; David M A Martin; James P McCarter; Larry McReynolds; Makedonka Mitreva; Thomas B Nutman; John Parkinson; José M Peregrín-Alvarez; Catherine Poole; Qinghu Ren; Lori Saunders; Ann E Sluder; Katherine Smith; Mario Stanke; Thomas R Unnasch; Jenna Ware; Aguan D Wei; Gary Weil; Deryck J Williams; Yinhua Zhang; Steven A Williams; Claire M Fraser-Liggett; Barton Slatko; Mark L Blaxter; Alan L Scott
Draft genome of the filarial nematode parasite Brugia malayi.
Science (New York, N.Y.) 2007;317(5845):1756-60.
2007: Vishvanath Nene; Jennifer Wortman; Daniel Lawson; Brian Haas; Chinnappa Kodira; Zhijian Jake Tu; Brendan Loftus; Zhiyong Xi; Karyn Megy; Manfred Grabherr; Quinghu Ren; Evgeny M Zdobnov; Neil F Lobo; Kathryn S Campbell; Susan E Brown; Maria F Bonaldo; Jingsong Zhu; Steven P Sinkins; David G Hogenkamp; Paolo Amedeo; Peter Arensburger; Peter W Atkinson; Shelby Bidwell; Jim Biedler; Ewan Birney; Robert V Bruggner; Javier Costas; Monique R Coy; Jonathan Crabtree; Matt Crawford; Becky Debruyn; David Decaprio; Karin Eiglmeier; Eric Eisenstadt; Hamza El-Dorry; William M Gelbart; Suely L Gomes; Martin Hammond; Linda I Hannick; James R Hogan; Michael H Holmes; David Jaffe; J Spencer Johnston; Ryan C Kennedy; Hean Koo; Saul Kravitz; Evgenia Kriventseva; David Kulp; Kurt Labutti; Eduardo Lee; Song Li; Diane D Lovin; Chunhong Mao; Evan Mauceli; Carlos F M Menck; Jason R Miller; Philip Montgomery; Akio Mori; Ana L Nascimento; Horacio F Naveira; Chad Nusbaum; Sinéad O'leary; Joshua Orvis; Mihaela Pertea; Hadi Quesneville; Kyanne R Reidenbach; Yu-Hui Rogers; Charles W Roth; Jennifer R Schneider; Michael Schatz; Martin Shumway; Mario Stanke; Eric O Stinson; Jose M C Tubio; Janice P Vanzee; Sergio Verjovski-Almeida; Doreen Werner; Owen R White; Stefan Wyder; Qiandong Zeng; Qi Zhao; Yongmei Zhao; Catherine A Hill; Alexander S Raikhel; Marcelo B Soares; Dennis L Knudson; Norman H Lee; James Galagan; Steven L Salzberg; Ian Paulsen; George Dimopoulos; Frank H Collins; Bruce Birren; Claire M Fraser-Liggett; David Severson
Genome sequence of Aedes aegypti, a major arbovirus vector.
Science (New York, N.Y.) 2007;316(5832):1718-23.
2007: Robyn M Perrin; Natalie Fedorova Abrams; Jin Woo Bok; Robert A Cramer; Jennifer Wortman; Heenam Stanley Kim; William C Nierman; Nancy P Keller
Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA.
PLoS pathogens 2007;3(4):e50.
2007: Jane M Carlton; Robert Hirt; Joana Carneiro Da Silva; Arthur L Delcher; Michael Schatz; Qi Zhao; Jennifer Wortman; Shelby L Bidwell; U Cecilia M Alsmark; Sébastien Besteiro; thomas sicheritz-ponten; Christophe Noel; Joel B Dacks; Peter G Foster; Cedric Simillion; Yves Van de Peer; Diego Miranda-Saavedra; Geoffrey J Barton; Gareth D Westrop; Sylke Müller; Daniele Dessi; Pier Luigi Fiori; Qinghu Ren; Ian Paulsen; Hanbang Zhang; Felix D Bastida-Corcuera; Augusto Simoes-Barbosa; Mark T Brown; Richard D Hayes; Mandira Mukherjee; Cheryl Y Okumura; Rachel Schneider; Alias J Smith; Stepanka Vanacova; Maria Villalvazo; Brian J Haas; Mihaela Pertea; Tamara V Feldblyum; Terry R Utterback; Chung-Li Shu; Kazutoyo Osoegawa; Pieter J de Jong; Ivan Hrdy; Lenka Horvathova; Zuzana Zubacova; Pavel Dolezal; Shehre-Banoo Malik; John M Logsdon; Katrin Henze; Arti Gupta; Ching C Wang; Rebecca L Dunne; Jacqueline A Upcroft; Peter Upcroft; Owen R White; Steven L Salzberg; Petrus Tang; Cheng-Hsun Chiu; Ying-Shiung Lee; T Martin Embley; Graham H Coombs; Jeremy C Mottram; Jan Tachezy; Claire M Fraser-Liggett; Patricia J Johnson
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.
Science (New York, N.Y.) 2007;315(5809):207-12.
2007: Antonis Rokas; G Payne; Natalie Fedorova Abrams; S E Baker; M Machida; J Yu; D Ryan Georgianna; Ralph A Dean; Deepak Bhatnagar; T E Cleveland; Jennifer Wortman; R Maiti; V Joardar; P Amedeo; D W Denning; W C Nierman
What can comparative genomics tell us about species concepts in the genus Aspergillus?
Studies in mycology 2007;59():11-7.
2007: Jonathan Crabtree; Samuel V Angiuoli; Jennifer Wortman; Owen R White
Sybil: methods and software for multiple genome comparison and visualization.
Methods in molecular biology (Clifton, N.J.) 2007;408():93-108.
2007: Shu Ouyang; Wei Zhu; John Hamilton; Haining Lin; Matthew Campbell; Kevin L Childs; Françoise Thibaud-Nissen; Renae L Malek; Yuandan Lee; Li Zheng; Joshua Orvis; Brian Haas; Jennifer Wortman; C Robin Buell
The TIGR Rice Genome Annotation Resource: improvements and new features.
Nucleic acids research 2007;35(Database issue):D883-7.
2006: Jonathan Eisen; Robert S Coyne; Martin Wu; Dongying Wu; Mathangi Thiagarajan; Jennifer Wortman; Jonathan H Badger; Qinghu Ren; Paolo Amedeo; Kristie M Jones; Luke J Tallon; Arthur L Delcher; Steven L Salzberg; Joana Carneiro Da Silva; Brian J Haas; William H Majoros; Maryam Farzad; Jane M Carlton; Roger K Smith; Jyoti Garg; Ronald E Pearlman; Kathleen M Karrer; Lei Sun; Gerard Manning; Nels C Elde; Aaron P Turkewitz; David J Asai; David E Wilkes; Yufeng Wang; Hong Cai; Kathleen Collins; B Andrew Stewart; Suzanne R Lee; Katarzyna Wilamowska; Zasha Weinberg; Walter L Ruzzo; Dorota Wloga; Jacek Gaertig; Joseph Frankel; Che-Chia Tsao; Martin A Gorovsky; Patrick J Keeling; Ross F Waller; patron nicola; J Michael Cherry; Nicholas A Stover; Cynthia J Krieger; Christina del Toro; Hilary F Ryder; Sondra C Williamson; Rebecca A Barbeau; Eileen P Hamilton; Eduardo Orias
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.
PLoS biology 2006;4(9):e286.
2006: Christopher D Town; Foo Cheung; Rama Maiti; Jonathan Crabtree; Brian J Haas; Jennifer Wortman; Erin E Hine; Ryan Althoff; Tamara S Arbogast; Luke J Tallon; Marielle Vigouroux; Martin Trick; Ian Bancroft
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.
The Plant cell 2006;18(6):1348-59.
2005: Masayuki Machida; Kiyoshi Asai; Motoaki Sano; Toshihiro Tanaka; Toshitaka Kumagai; Goro Terai; Ken-Ichi Kusumoto; Toshihide Arima; Osamu Akita; Yutaka Kashiwagi; Keietsu Abe; Katsuya Gomi; Hiroyuki Horiuchi; Katsuhiko Kitamoto; Tetsuo Kobayashi; Michio Takeuchi; David W Denning; James E Galagan; William C Nierman; Jiujiang Yu; David B Archer; Joan W Bennett; Deepak Bhatnagar; Thomas E Cleveland; Natalie Fedorova Abrams; Osamu Gotoh; Hiroshi Horikawa; Akira Hosoyama; Masayuki Ichinomiya; Rie Igarashi; Kazuhiro Iwashita; Praveen Rao Juvvadi; Masashi Kato; Yumiko Kato; Taishin Kin; Akira Kokubun; Hiroshi Maeda; Noriko Maeyama; Jun-ichi Maruyama; Hideki Nagasaki; Tasuku Nakajima; Ken Oda; Kinya Okada; Ian Paulsen; Kazutoshi Sakamoto; Toshihiko Sawano; Mikio Takahashi; Kumiko Takase; Yasunobu Terabayashi; Jennifer Wortman; Osamu Yamada; Youhei Yamagata; Hideharu Anazawa; Yoji Hata; Yoshinao Koide; Takashi Komori; Yasuji Koyama; Toshitaka Minetoki; Sivasundaram Suharnan; Akimitsu Tanaka; Katsumi Isono; Satoru Kuhara; Naotake Ogasawara; Hisashi Kikuchi
Genome sequencing and analysis of Aspergillus oryzae.
Nature 2005;438(7071):1157-61.
2005: William C Nierman; Arnab Pain; Michael J Anderson; Jennifer Wortman; Heenam Stanley Kim; Javier Arroyo; Matthew Berriman; Keietsu Abe; David B Archer; Clara Bermejo; Joan Bennett; Paul Bowyer; Dan Chen; Matthew Collins; Richard Coulsen; Robert Davies; Paul S Dyer; Mark Farman; Natalie Fedorova Abrams; Natalie Fedorova; Tamara V Feldblyum; Reinhard Fischer; Nigel Fosker; Audrey Fraser; Jose L García; Maria J García; Arlette Goble; Gustavo H Goldman; Katsuya Gomi; Sam Griffith-Jones; Rhian Gwilliam; Brian Haas; Hubertus Haas; David Harris; H Horiuchi; Jiaqi Huang; Sean Humphray; Javier Jiménez; Nancy Keller; Hoda Khouri; Katsuhiko Kitamoto; Tetsuo Kobayashi; Sven Konzack; Resham Kulkarni; Toshitaka Kumagai; Anne Lafon; Anne Lafton; Jean-Paul Latgé; Weixi Li; Angela Lord; Charles Lu; William H Majoros; Gregory S May; Bruce L Miller; Yasmin Mohamoud; Maria Molina; Michel Monod; Isabelle Mouyna; Stephanie Mulligan; Lee Murphy; Susan O'Neil; Ian Paulsen; Miguel A Peñalva; Mihaela Pertea; Claire Price; Bethan L Pritchard; Michael A Quail; Ester Rabbinowitsch; Neil Rawlins; Marie-Adele Rajandream; Utz Reichard; Hubert Renauld; Geoff Robson; Santiago Rodriguez de Córdoba; Jose M Rodríguez-Peña; Catherine M Ronning; Simon Rutter; Steven L Salzberg; Miguel Sanchez; Juan C Sánchez-Ferrero; David Saunders; kathy seeger; Rob Squares; Steven Squares; Michio Takeuchi; Fredj Tekaia; Geoffrey Turner; Carlos Vazquez de Aldana; Janice Weidman; Owen R White; John Woodward; Jae-Hyuk Yu; Claire M Fraser-Liggett; James E Galagan; Kiyoshi Asai; Masayuki Machida; Neil Hall; Bart Barrell; David W Denning
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
Nature 2005;438(7071):1151-6.
2005: James E Galagan; Sarah E Calvo; Christina Cuomo; Li-Jun Ma; Jennifer Wortman; Serafim Batzoglou; Su-In Lee; Meray Baştürkmen; Christina C Spevak; John Clutterbuck; Vladimir Kapitonov; Jerzy Jurka; Claudio Scazzocchio; Mark Farman; Jonathan Butler; Seth Purcell; Steve Harris; Gerhard H Braus; Oliver Draht; Silke Busch; Christophe D'Enfert; Christiane Bouchier; Gustavo H Goldman; Deborah Bell-Pedersen; Sam Griffiths-Jones; John Hugh doonan (JIC); Jaehyuk Yu; Kay Vienken; Arnab Pain; Michael Freitag; Eric U Selker; David B Archer; Miguel A Peñalva; Berl R Oakley; Michelle Momany; Toshihiro Tanaka; Toshitaka Kumagai; Kiyoshi Asai; Masayuki Machida; William C Nierman; David W Denning; Mark Caddick; Michael Hynes; Mathieu Paoletti; Reinhard Fischer; Bruce Miller; Paul Dyer; Matthew S Sachs; Stephen A Osmani; Bruce W Birren
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
Nature 2005;438(7071):1105-15.
2005: Catherine M Ronning; Natalie Fedorova Abrams; Paul Bowyer; Richard Coulson; Gustavo Goldman; Heenam Stanley Kim; Geoffrey Turner; Jennifer Wortman; Jiujiang Yu; Michael J Anderson; David W Denning; William C Nierman
Genomics of Aspergillus fumigatus.
Revista iberoamericana de micología 2005;22(4):223-8.
2005: C Robin Buell; Qiaoping Yuan; Shu Ouyang; Jia Liu; Wei Zhu; Aihui Wang; Rama Maiti; Brian Haas; Jennifer Wortman; Mihaela Pertea; Kristine M Jones; Mary Kim; Larry Overton; Tamara Tsitrin; Douglas Fadrosh; Jayati Bera; Bruce Weaver; Shaohua Jin; Shivani Johri; Matt Reardon; Kristen Webb; Jessica Hill; Kelly Moffat; Luke Tallon; Susan Van Aken; Matthew Lewis; Teresa Utterback; Tamara Feldblyum; Victoria L Zismann; Stacey Iobst; Joseph Hsiao; Aymeric R de Vazeille; Steven L Salzberg; Owen R White; Claire M Fraser-Liggett; Yeisoo Yu; HeyRan Kim; Teri Rambo; Jennifer Currie; Kristi Collura; Shelly Kernodle-Thompson; Fusheng Wei; Kudrna Kudrna; Jetty Siva S Ammiraju; Meizhong Luo; Jose Luis Goicoechea; Rod A Wing; David Henry; Ryan Oates; Michael Palmer; Gina Pries; Christopher Saski; Jessica Simmons; Carol Soderlund; William Nelson; Melissa de la Bastide; Lori Spiegel; Lidia Nascimento; Emily Huang; Raymond Preston; Theresa Zutavern; Lance Palmer; Andrew O'Shaughnessy; Sujit Dike; W Richard McCombie; Pat Minx; Holly Cordum; Richard Wilson; Weiwei Jin; Hye-Ran Lee; Jiming Jiang; Scott Jackson
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.
Genome research 2005;15(9):1284-91.
2005: Matthew Berriman; Elodie Ghedin; Christiane Hertz-Fowler; Gaëlle Blandin; Hubert Renauld; Daniella C Bartholomeu; Nicola J Lennard; Elisabet Caler; Nancy E Hamlin; Brian Haas; Ulrike Böhme; Linda Hannick; Martin A Aslett; Joshua Shallom; Lucio Marcello; Lihua Hou; Bill Wickstead; U Cecilia M Alsmark; Claire Arrowsmith; Rebecca J Atkin; Andrew J Barron; Frederic Bringaud; Karen Brooks; Mark Carrington; Inna Cherevach; Tracey-Jane Chillingworth; Carol Churcher; Louise N Clark; Craig H Corton; Ann Cronin; Rob M Davies; Jonathon Doggett; Appolinaire Djikeng; Tamara Feldblyum; Mark Field; Audrey Fraser; Ian Goodhead; Zahra Hance; David Harper; Barbara R Harris; Heidi Hauser; Jessica Hostetler; Alasdair Ivens; Kay Jagels; David Johnson; Justin Johnson; Kristine Jones; Arnaud Kerhornou; Hean Koo; Natasha Larke; Scott M Landfear; Christopher Larkin; Vanessa Leech; Alexandra Line; Angela Lord; Annette Macleod; Paul J Mooney; Sharon Moule; David M A Martin; Gareth W Morgan; Karen Mungall; Halina Norbertczak; Doug Ormond; Grace Pai; Chris S Peacock; Jeremy Peterson; Michael A Quail; Ester Rabbinowitsch; Marie-Adele Rajandream; Chris Reitter; Steven L Salzberg; Mandy Sanders; Seth Schobel; Sarah Sharp; Mark Simmonds; Anjana J Simpson; Luke Tallon; C Michael R Turner; Andrew Tait; Adrian R Tivey; Susan Van Aken; Danielle Walker; David Wanless; Shiliang Wang; Brian White; Owen R White; Sally Whitehead; John Woodward; Jennifer Wortman; Mark D Adams; T Martin Embley; Keith Gull; Elisabetta Ullu; J David Barry; Alan H Fairlamb; Fred Opperdoes; Barclay G Barrell; John E Donelson; Neil Hall; Claire M Fraser-Liggett; Sara E Melville; Najib M El-Sayed
The genome of the African trypanosome Trypanosoma brucei.
Science (New York, N.Y.) 2005;309(5733):416-22.
2005: Najib M El-Sayed; Peter J Myler; Daniella C Bartholomeu; Daniel Nilsson; Gautam Aggarwal; Anh-Nhi Tran; Elodie Ghedin; Elizabeth A Worthey; Arthur L Delcher; Gaëlle Blandin; Scott Westenberger; Elisabet Caler; Gustavo Cerqueira; Carole Branche; Brian Haas; Atashi Anupama; Erik Arner; Lena Aslund; Philip Attipoe; Esteban Bontempi; Frédéric Bringaud; Peter Burton; Eithon Cadag; David A Campbell; Mark Carrington; Jonathan Crabtree; Hamid Darban; Jose Franco da Silveira; Pieter de Jong; Kimberly Edwards; Paul T Englund; Gholam Fazelina; Tamara Feldblyum; Marcela Ferella; Alberto Carlos Frasch; Keith Gull; David Horn; Lihua Hou; Yiting Huang; Ellen Kindlund; Michele Klingbeil; Sindy Kluge; Hean Koo; Daniela Lacerda; Mariano J Levin; Hernan Lorenzi; Tin Louie; Carlos Renato Machado; Richard McCulloch; Alan McKenna; Yumi Mizuno; Jeremy C Mottram; Siri Nelson; Stephen Ochaya; Kazutoyo Osoegawa; Grace Pai; Marilyn Parsons; Martin Pentony; Ulf Pettersson; Mihai Pop; Jose Ramirez; Joel Rinta; Laura Robertson; Steven L Salzberg; Daniel O Sanchez; Amber Seyler; Reuben Sharma; Jyoti Shetty; Anjana J Simpson; Ellen Sisk; Martti T Tammi; Rick L Tarleton; Santuza Teixeira; Susan Van Aken; Christy Vogt; Pauline N Ward; Bill Wickstead; Jennifer Wortman; Owen R White; Claire M Fraser-Liggett; Kenneth D Stuart; Björn Andersson
The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.
Science (New York, N.Y.) 2005;309(5733):409-15.
2005: Najib M El-Sayed; Peter J Myler; Gaëlle Blandin; Matthew Berriman; Jonathan Crabtree; Gautam Aggarwal; Elisabet Caler; Hubert Renauld; Elizabeth A Worthey; Christiane Hertz-Fowler; Elodie Ghedin; Christopher Peacock; Daniella C Bartholomeu; Brian J Haas; Anh-Nhi Tran; Jennifer Wortman; U Cecilia M Alsmark; Samuel Angiuoli; Atashi Anupama; Jonathan Badger; Frederic Bringaud; Eithon Cadag; Jane M Carlton; Gustavo Cerqueira; Todd Creasy; Arthur L Delcher; Appolinaire Djikeng; T Martin Embley; Christopher Hauser; Alasdair Ivens; Sarah K Kummerfeld; Jose Pereira-Leal; Daniel Nilsson; Jeremy Peterson; Steven L Salzberg; Joshua Shallom; Joana Carneiro Da Silva; Jaideep Sundaram; Scott Westenberger; Owen R White; Sara E Melville; John E Donelson; Björn Andersson; Kenneth D Stuart; Neil Hall
Comparative genomics of trypanosomatid parasitic protozoa.
Science (New York, N.Y.) 2005;309(5733):404-9.
2005: Malcolm J Gardner; Richard Bishop; Trushar Shah; Etienne de Villiers; Jane M Carlton; Neil Hall; Qinghu Ren; Ian Paulsen; Arnab Pain; Matthew Berriman; Robert J M Wilson; Shigeharu Sato; Stuart A Ralph; David J Mann; Zikai Xiong; Shamira J Shallom; Janice Weidman; Lingxia Jiang; Jeffery Lynn; Bruce Weaver; Azadeh Shoaibi; Alexander R Domingo; Delia Wasawo; Jonathan Crabtree; Jennifer Wortman; Brian Haas; Samuel V Angiuoli; Todd H Creasy; Charles Lu; Bernard Suh; Joana Carneiro Da Silva; Teresa R Utterback; Tamara V Feldblyum; Mihaela Pertea; Jonathan Allen; William C Nierman; Evans L N Taracha; Steven L Salzberg; Owen R White; Henry A Fitzhugh; Subhash Morzaria; J Craig Venter; Claire M Fraser-Liggett; Vishvanath Nene
Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes.
Science (New York, N.Y.) 2005;309(5731):134-7.
2005: M E da Silva Ferreira; Arnaldo L Colombo; I Paulsen; Q Ren; Jennifer Wortman; J Huang; Maria Helena S Goldman; Gustavo H Goldman
The ergosterol biosynthesis pathway, transporter genes, and azole resistance in Aspergillus fumigatus.
Medical mycology : official publication of the International Society for Human and Animal Mycology 2005;43 Suppl 1():S313-9.
2005: Geoff Robson; J Huang; Jennifer Wortman; David B Archer
A preliminary analysis of the process of protein secretion and the diversity of putative secreted hydrolases encoded in Aspergillus fumigatus: insights from the genome.
Medical mycology : official publication of the International Society for Human and Animal Mycology 2005;43 Suppl 1():S41-7.
2005: Qiaoping Yuan; Shu Ouyang; Aihui Wang; Wei Zhu; Rama Maiti; Haining Lin; John Hamilton; Brian Haas; Razvan Sultana; Foo Cheung; Jennifer Wortman; C Robin Buell
The institute for genomic research Osa1 rice genome annotation database.
Plant physiology 2005;138(1):18-26.
2005: Mulu Ayele; Brian J Haas; Nikhil Kumar; Hank Wu; Yongli Xiao; Susan Van Aken; Teresa Utterback; Jennifer Wortman; Owen R White; Christopher D Town
Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis.
Genome research 2005;15(4):487-95.
2005: Brendan J Loftus; Eula Fung; Paola Roncaglia; Don Rowley; Paolo Amedeo; Dan Bruno; Jessica Vamathevan; Molly Miranda; Iain J Anderson; James A Fraser; Jonathan E Allen; Ian E Bosdet; Michael R Brent; Readman Chiu; Tamara L Doering; Maureen J Donlin; Cletus A D'Souza; Deborah S Fox; Viktoriya Grinberg; Jianmin Fu; Marilyn Fukushima; Brian J Haas; James C Huang; Guilhem Janbon; Steven J M Jones; Hean L Koo; Martin I Krzywinski; June K Kwon-Chung; Klaus B Lengeler; Rama Maiti; Marco A Marra; Robert E Marra; Carrie A Mathewson; Thomas G Mitchell; Mihaela Pertea; Florenta R Riggs; Steven L Salzberg; Jacqueline E Schein; Alla Shvartsbeyn; Heesun Shin; Martin Shumway; Charles A Specht; Bernard B Suh; Aaron Tenney; Terry R Utterback; Brian L Wickes; Jennifer Wortman; Natasja H Wye; James W Kronstad; Jennifer lodge; Joseph Heitman; Ronald W Davis; Claire M Fraser-Liggett; Richard W Hyman
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans.
Science (New York, N.Y.) 2005;307(5713):1321-4.
2005: Natalie Fedorova Abrams; Jonathan H Badger; Geoff Robson; Jennifer Wortman; William C Nierman
Comparative analysis of programmed cell death pathways in filamentous fungi.
BMC genomics 2005;6():177.
2005: Richard Bishop; Trushar Shah; Roger Pelle; David C Hoyle; Terry Pearson; Lee Haines; Andrew Brass; Helen Hulme; Simon P Graham; Evans L N Taracha; Simon Kanga; Charles Lu; Brian Hass; Jennifer Wortman; Owen R White; Malcolm J Gardner; Vishvanath Nene; Etienne de Villiers
Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage.
Nucleic acids research 2005;33(17):5503-11.
2005: Brian J Haas; Jennifer Wortman; Catherine M Ronning; Linda I Hannick; Roger K Smith; Rama Maiti; Agnes P Chan; Chunhui Yu; Maryam Farzad; Dongying Wu; Owen R White; Christopher D Town
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.
BMC biology 2005;3():7.
2004: Brian J Haas; Arthur L Delcher; Jennifer Wortman; Steven L Salzberg
DAGchainer: a tool for mining segmental genome duplications and synteny.
Bioinformatics (Oxford, England) 2004;20(18):3643-6.
2004: M A Harris; J Clark; A Ireland; J Lomax; Michael Ashburner; R Foulger; K Eilbeck; S Lewis; B Marshall; C Mungall; J Richter; G M Rubin; J A Blake; Carol Bult; M Dolan; H Drabkin; J T Eppig; D P Hill; L Ni; M Ringwald; R Balakrishnan; J M Cherry; K R Christie; M C Costanzo; S S Dwight; S Engel; D G Fisk; J E Hirschman; E L Hong; R S Nash; A Sethuraman; C L Theesfeld; D Botstein; K Dolinski; B Feierbach; T Berardini; S Mundodi; S Y Rhee; R Apweiler; D Barrell; E Camon; E Dimmer; V Lee; R Chisholm; P Gaudet; W Kibbe; R Kishore; E M Schwarz; P Sternberg; Michelle G Giglio; L Hannick; Jennifer Wortman; M Berriman; V Wood; N de la Cruz; Peter Tonellato; P Jaiswal; T Seigfried; R White
The Gene Ontology (GO) database and informatics resource.
Nucleic acids research 2004;32(Database issue):D258-61.
2003: Brian J Haas; Arthur L Delcher; Steve Mount; Jennifer Wortman; Roger K Smith; Linda I Hannick; Rama Maiti; Catherine M Ronning; Douglas B Rusch; Christopher D Town; Steven L Salzberg; Owen R White
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
Nucleic acids research 2003;31(19):5654-66.
2003: Jennifer Wortman; Brian J Haas; Linda I Hannick; Roger K Smith; Rama Maiti; Catherine M Ronning; Agnes P Chan; Chunhui Yu; Mulu Ayele; Catherine A Whitelaw; Owen R White; Christopher D Town
Annotation of the Arabidopsis genome.
Plant physiology 2003;132(2):461-8.
2002: Robert A Holt; G. SUBRAMANIAN; Aaron Halpern; Granger G Sutton; Rosane Charlab; Deborah R Nusskern; Patrick Wincker; andrew clark; José M C Ribeiro; Ron Wides; Steven L Salzberg; Brendan Loftus; Mark Yandell; William H Majoros; Douglas B Rusch; Zhongwu Lai; Cheryl L Kraft; Josep F Abril; Veronique Anthouard; Peter Arensburger; Peter W Atkinson; Holly Baden; Veronique de Berardinis; Danita Baldwin; Vladimir Benes; Jim Biedler; Claudia Blass; Randall Bolanos; Didier Boscus; Mary Barnstead; Shuang Cai; Angela Center; Kabir Chaturverdi; George Christophides; Mathew A Chrystal; Michele Clamp; Anibal Cravchik; Val Curwen; Ali Dana; Art Delcher; Ian Dew; Cheryl A Evans; Michael Flanigan; Anne Grundschober-Freimoser; Lisa Friedli; Zhiping Gu; Ping Guan; Roderic Guigo; Maureen E Hillenmeyer; Susanne L Hladun; James R Hogan; Young S Hong; Jeffrey Hoover; Olivier Jaillon; Zhaoxi Ke; Chinnappa Kodira; Elena Kokoza; Anastasios Koutsos; Ivica Letunic; Alex Levitsky; Yong Liang; Jhy-Jhu Lin; Neil F Lobo; John R Lopez; Joel A Malek; Tina C McIntosh; Stephan Meister; Jason Miller; Clark Mobarry; Emmanuel Mongin; Sean D Murphy; David A O'Brochta; Cynthia Pfannkoch; Rong Qi; Megan A Regier; Karin Remington; Hongguang Shao; Maria V Sharakhova; Cynthia D Sitter; Jyoti Shetty; Thomas J Smith; Renee Strong; Jingtao Sun; Dana Thomasova; Lucas Q Ton; Pantelis Topalis; Zhijian Tu; Maria F Unger; Brian Walenz; Aihui Wang; Jian Wang; Mei Wang; Xuelan Wang; Kerry J Woodford; Jennifer Wortman; Martin Wu; Alison Yao; Evgeny M Zdobnov; Hongyu Zhang; Qi Zhao; Shaying Zhao; Shiaoping C Zhu; Igor Zhimulev; Mario Coluzzi; Alessandra della Torre; Charles W Roth; Christos Louis; Francis Kalush; Richard J Mural; Eugene W Myers; Mark D Adams; Hamilton O Smith; Samuel Broder; Malcolm J Gardner; Claire M Fraser-Liggett; Ewan Birney; Peer Bork; Paul T Brey; J Craig Venter; Jean Weissenbach; Fotis C Kafatos; Frank H Collins; Stephen L Hoffman
The genome sequence of the malaria mosquito Anopheles gambiae.
Science (New York, N.Y.) 2002;298(5591):129-49.
2002: Richard J Mural; Mark D Adams; Eugene W Myers; Hamilton O Smith; George L Gabor Miklos; Ron Wides; Aaron Halpern; Peter W Li; Granger G Sutton; Joe Nadeau; Steven L Salzberg; Robert A Holt; Chinnappa D Kodira; Fu Lu; Lin Chen; Zuoming Deng; Carlos C Evangelista; Weiniu Gan; Thomas J Heiman; Jiayin Li; Zhenya Li; Gennady V Merkulov; Natalia V Milshina; Ashwinikumar K Naik; Rong Qi; Bixiong Chris Shue; Aihui Wang; Jian Wang; Xin Wang; Xianghe Yan; Jane Ye; Shibu Yooseph; Qi Zhao; Liansheng Zheng; Shiaoping C Zhu; Kendra Biddick; Randall Bolanos; Arthur L Delcher; Ian M Dew; Daniel Fasulo; Michael J Flanigan; Daniel H Huson; Saul A Kravitz; Jason R Miller; Clark M Mobarry; Knut Reinert; Karin A Remington; Qing Zhang; Xiangqun H Zheng; Deborah R Nusskern; Zhongwu Lai; Yiding Lei; Wenyan Zhong; Alison Yao; Ping Guan; Rui-Ru Ji; Zhiping Gu; Zhen-Yuan Wang; Fei Zhong; Chunlin Xiao; Chia-Chien Chiang; Mark Yandell; Jennifer Wortman; Peter G Amanatides; Suzanne L Hladun; Eric C Pratts; Jeffery E Johnson; Kristina L Dodson; Kerry J Woodford; Cheryl A Evans; Barry Gropman; Douglas B Rusch; Eli Venter; Mei Wang; Thomas J Smith; Jarrett T Houck; Donald E Tompkins; Charles Haynes; Debbie Jacob; Soo H Chin; David R Allen; Carl E Dahlke; Robert Sanders; Kelvin Li; Xiangjun Liu; Alexander A Levitsky; William H Majoros; Quan Chen; Ashley C Xia; John R Lopez; Michael T Donnelly; Matthew H Newman; Anna Glodek; Cheryl L Kraft; Marc Nodell; Feroze Ali; Hui-Jin An; Danita Baldwin-Pitts; Karen Y Beeson; Shuang Cai; Mark Carnes; Amy Carver; Parris M Caulk; Angela Center; Yen-Hui Chen; Ming-Lai Cheng; My D Coyne; Michelle Crowder; Steven Danaher; Lionel B Davenport; Raymond Desilets; Susanne M Dietz; Lisa Doup; Patrick Dullaghan; Steven Ferriera; Carl R Fosler; Harold C Gire; Andres Gluecksmann; Jeannine D Gocayne; Jonathan Gray; Brit Hart; Jason Haynes; Jeffery Hoover; Tim Howland; Chinyere Ibegwam; Mena Jalali; David Johns; Leslie Kline; Daniel S Ma; Steven MacCawley; Anand Magoon; Felecia Mann; David May; Tina C McIntosh; Somil Mehta; Linda Moy; Mee C Moy; Brian J Murphy; Sean D Murphy; Keith A Nelson; Zubeda Nuri; Kimberly A Parker; Alexandre C Prudhomme; Vinita N Puri; Hina Qureshi; John C Raley; Matthew S Reardon; Megan A Regier; Yu-Hui C Rogers; Deanna L Romblad; Jakob Schutz; John L Scott; Richard Scott; Cynthia D Sitter; Michella Smallwood; Arlan C Sprague; Erin Stewart; Renee V Strong; Ellen Suh; Karena Sylvester; Reginald Thomas; Ni Ni Tint; Christopher Tsonis; Gary Wang; George Wang; Monica S Williams; Sherita M Williams; Sandra M Windsor; Keriellen Wolfe; Mitchell M Wu; Jayshree Zaveri; Kabir Chaturvedi; Andrei E Gabrielian; Zhaoxi Ke; Jingtao Sun; G. SUBRAMANIAN; J Craig Venter; Cynthia M Pfannkoch; Mary Barnstead; Lisa D Stephenson
A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.
Science (New York, N.Y.) 2002;296(5573):1661-71.
2001: J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; Hamilton O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; Jennifer Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G. SUBRAMANIAN; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; andrew clark; J Nadeau; Victor A McKusick; N Zinder; Arnold J Levine; Richard J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; Steven L Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; Shaying Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; Damon Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; Edward Suh; R Thomas; N N Tint; S Tse; C Vech; Gaofeng Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; Josep F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
The sequence of the human genome.
Science (New York, N.Y.) 2001;291(5507):1304-51.
2000: Shengkan Jin; S Martinek; W S Joo; Jennifer Wortman; Nebojsa Mirkovic; Andrej Sali; M D Yandell; Nikola P Pavletich; Michael W Young; Arnold J Levine
Identification and characterization of a p53 homologue in Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(13):7301-6.
2000: G M Rubin; M D Yandell; Jennifer Wortman; G L Gabor Miklos; C R Nelson; I K Hariharan; M E Fortini; P W Li; R Apweiler; W Fleischmann; J M Cherry; S Henikoff; M P Skupski; S Misra; Michael Ashburner; E Birney; M S Boguski; Thomas Brody; P Brokstein; S E Celniker; S A Chervitz; D Coates; A Cravchik; A Gabrielian; R F Galle; W M Gelbart; R A George; L S Goldstein; F Gong; P Guan; N L Harris; B A Hay; R A Hoskins; J Li; Z Li; R O Hynes; S J Jones; P M Kuehl; B Lemaitre; J Troy Littleton; D K Morrison; C Mungall; P H O'Farrell; Oxana Pickeral; C Shue; L B Vosshall; J Zhang; Q Zhao; X H Zheng; S Lewis
Comparative genomics of the eukaryotes.
Science (New York, N.Y.) 2000;287(5461):2204-15.
2000: M D Adams; S E Celniker; R A Holt; C A Evans; J D Gocayne; P G Amanatides; S E Scherer; P W Li; R A Hoskins; R F Galle; R A George; S E Lewis; S Richards; Michael Ashburner; S N Henderson; G G Sutton; Jennifer Wortman; M D Yandell; Q Zhang; L X Chen; R C Brandon; Y H Rogers; R G Blazej; M Champe; B D Pfeiffer; K H Wan; C Doyle; E G Baxter; G Helt; C R Nelson; G L Gabor; Josep F Abril; A Agbayani; H J An; C Andrews-Pfannkoch; D Baldwin; R M Ballew; A Basu; J Baxendale; L Bayraktaroglu; E M Beasley; K Y Beeson; P V Benos; B P Berman; D Bhandari; S Bolshakov; D Borkova; M R Botchan; John Bouck; P Brokstein; P Brottier; K C Burtis; D A Busam; H Butler; Edouard Cadieu; A Center; I Chandra; J M Cherry; S Cawley; C Dahlke; L B Davenport; P Davies; B de Pablos; A Delcher; Z Deng; A D Mays; I Dew; S M Dietz; K Dodson; L E Doup; M Downes; S Dugan-Rocha; B C Dunkov; P Dunn; K J Durbin; C C Evangelista; C Ferraz; S Ferriera; W Fleischmann; C Fosler; A E Gabrielian; N S Garg; W M Gelbart; K Glasser; A Glodek; F Gong; J H Gorrell; Z Gu; P Guan; M Harris; N L Harris; D Harvey; T J Heiman; J R Hernandez; J Houck; Damon Hostin; K A Houston; T J Howland; M H Wei; C Ibegwam; M Jalali; F Kalush; Gary Karpen; Z Ke; J A Kennison; K A Ketchum; B E Kimmel; C D Kodira; C Kraft; S Kravitz; D Kulp; Z Lai; Paul Lasko; Y Lei; A A Levitsky; J Li; Z Li; Y Liang; X Lin; X Liu; B Mattei; T C McIntosh; M P McLeod; D McPherson; G Merkulov; N V Milshina; C Mobarry; J Morris; A Moshrefi; Steve Mount; M Moy; B Murphy; L Murphy; D M Muzny; D L Nelson; David Nelson; K A Nelson; K Nixon; D R Nusskern; J M Pacleb; M Palazzolo; G S Pittman; S Pan; J Pollard; V Puri; M G Reese; K Reinert; K Remington; R D Saunders; F Scheeler; H Shen; B C Shue; I Sidén-Kiamos; M Simpson; M P Skupski; T Smith; E Spier; ALLAN SPRADLING; M Stapleton; R Strong; E Sun; R Svirskas; C Tector; R Turner; E Venter; A H Wang; X Wang; Z Y Wang; D A Wassarman; G M Weinstock; J Weissenbach; S M Williams; K C Worley; D Wu; S Yang; Q A Yao; J Ye; R F Yeh; J S Zaveri; M Zhan; G Zhang; Q Zhao; L Zheng; X H Zheng; F N Zhong; W Zhong; X Zhou; S Zhu; X Zhu; Hamilton O Smith; R A Gibbs; E W Myers; G M Rubin; J C Venter
The genome sequence of Drosophila melanogaster.
Science (New York, N.Y.) 2000;287(5461):2185-95.
1999: MP Skupski; M Booker; Andrew Farmer; M Harpold; W Huang; J Inman; D Kiphart; C Kodira; S Root; F Schilkey; J Schwertfeger; A Siepel; D Stamper; N Thayer; R Thompson; Jennifer Wortman; J J Zhuang; C Harger
The Genome Sequence DataBase: towards an integrated functional genomics resource.
Nucleic acids research 1999;27(1):35-8.