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Neil Sarkar

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Evolution, Molecular

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Publications

TOP 3
Brenda A Perez-Cheeks; Paul J Planet; Neil Sarkar; Qingping Xu; Sarah A Clock; David H Figurski
The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans.
Neil Sarkar; Paul J Planet; Rob DeSalle
caos software for use in character-based DNA barcoding.
Antonio Garcia-España; Pei-Jung Chung; Neil Sarkar; Eric Stiner; Tung-Tien Sun; Rob DeSalle
Appearance of new tetraspanin genes during vertebrate evolution.

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All Publications

2012: Brenda A Perez-Cheeks; Paul J Planet; Neil Sarkar; Qingping Xu; Sarah A Clock; David H Figurski
The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans.
Molecular microbiology 2012;83(4):694-711.
2008: Neil Sarkar; Paul J Planet; Rob DeSalle
caos software for use in character-based DNA barcoding.
Molecular ecology resources 2008;8(6):1256-9.
2008: Antonio Garcia-España; Pei-Jung Chung; Neil Sarkar; Eric Stiner; Tung-Tien Sun; Rob DeSalle
Appearance of new tetraspanin genes during vertebrate evolution.
Genomics 2008;91(4):326-34.
2008: J Rach; Rob DeSalle; Neil Sarkar; Bernd Schierwater; Heike Hadrys
Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata.
Proceedings. Biological sciences / The Royal Society 2008;275(1632):237-47.
2008: Neil Sarkar; Ryan Schenk; Catherine N Norton
Exploring historical trends using taxonomic name metadata.
BMC evolutionary biology 2008;8():144.
2008: Neil Sarkar; Mary G Egan; Gloria Coruzzi; Ernest K Lee; Rob DeSalle
Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics.
BMC bioinformatics 2008;9():103.
2007: Neil Sarkar
Biodiversity informatics: organizing and linking information across the spectrum of life.
Briefings in bioinformatics 2007;8(5):347-57.
2007: Patrick R Leary; David P Remsen; Catherine N Norton; David J Patterson; Neil Sarkar
uBioRSS: tracking taxonomic literature using RSS.
Bioinformatics (Oxford, England) 2007;23(11):1434-6.
2007: Susan Perkins; Neil Sarkar; Richard Carter
The phylogeny of rodent malaria parasites: simultaneous analysis across three genomes.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2007;7(1):74-83.
2006: Joanna C Chiu; Ernest K Lee; Mary G Egan; Neil Sarkar; Gloria M Coruzzi; Rob DeSalle
OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
Bioinformatics (Oxford, England) 2006;22(6):699-707.
2006: Neil Sarkar
Phylogenetics in the modern era.
Journal of biomedical informatics 2006;39(1):3-5.
2006: Chif Umejei; Neil Sarkar
zMedline: a Medline-based Content Management System.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():1127.
2006: Neil Sarkar; Abha Agrawal
Literature based discovery of gene clusters using phylogenetic methods.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():689-93.
2005: Paul J Planet; Neil Sarkar
mILD: a tool for constructing and analyzing matrices of pairwise phylogenetic character incongruence tests.
Bioinformatics (Oxford, England) 2005;21(24):4423-4.
2005: Michael N Cantor; Neil Sarkar; Olivier Bodenreider; Yves lussier
Genestrace: phenomic knowledge discovery via structured terminology.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2005;():103-14.
2004: Jeffrey A Rosenfeld; Neil Sarkar; Paul J Planet; David H Figurski; Rob DeSalle
ORFcurator: molecular curation of genes and gene clusters in prokaryotic organisms.
Bioinformatics (Oxford, England) 2004;20(18):3462-5.
2003: Michael N Cantor; Neil Sarkar; R Gelman; F Hartel; Olivier Bodenreider; Yves lussier
An evaluation of hybrid methods for matching biomedical terminologies: mapping the gene ontology to the UMLS.
Studies in health technology and informatics 2003;95():62-7.
2003: Neil Sarkar; Michael N Cantor; R Gelman; F Hartel; Yves lussier
Linking biomedical language information and knowledge resources: GO and UMLS.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2003;():439-50.
2002: Neil Sarkar; Joseph W Thornton; Paul J Planet; David H Figurski; Bernd Schierwater; Rob DeSalle
An automated phylogenetic key for classifying homeoboxes.
Molecular phylogenetics and evolution 2002;24(3):388-99.
2002: Neil Sarkar; Justin Starren
Desiderata for personal electronic communication in clinical systems.
Journal of the American Medical Informatics Association : JAMIA 2002;9(3):209-16.
2002: Neil Sarkar; Paul J Planet; T E Bael; S E Stanley; Mark E Siddall; Rob DeSalle; David H Figurski
Characteristic attributes in cancer microarrays.
Journal of biomedical informatics 2002;35(2):111-22.
2002: Neil Sarkar; Thomas C Rindflesch
Discovering protein similarity using natural language processing.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():677-81.
2002: Yves lussier; Neil Sarkar; Michael N Cantor
An integrative model for in-silico clinical-genomics discovery science.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():469-73.
2001: Paul J Planet; Rob DeSalle; Mark E Siddall; T Bael; Neil Sarkar; S E Stanley
Systematic analysis of DNA microarray data: ordering and interpreting patterns of gene expression.
Genome research 2001;11(7):1149-55.