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Stephen Johnson

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Peter W Hung; Stephen Johnson; David R Kaufman; Eneida A Mendonca
A multi-level model of information seeking in the clinical domain.
RAFAEL GUERRERO-PRESTON; Christina Chan; David Vlahov; Maria K Mitchell; Stephen Johnson; Harold Freeman
Previous cancer screening behavior as predictor of endoscopic colon cancer screening among women aged 50 and over, in NYC 2002.
Stephen Johnson; Suzanne Bakken ; Daniel Dine; Sookyung Hyun; Eneida A Mendonca; Frances Morrison; Tiffani J Bright; Tielman Van Vleck; Jesse Wrenn; Peter D Stetson
An electronic health record based on structured narrative.

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All Publications

2008: Peter W Hung; Stephen Johnson; David R Kaufman; Eneida A Mendonca
A multi-level model of information seeking in the clinical domain.
Journal of biomedical informatics 2008;41(2):357-70.
2008: RAFAEL GUERRERO-PRESTON; Christina Chan; David Vlahov; Maria K Mitchell; Stephen Johnson; Harold Freeman
Previous cancer screening behavior as predictor of endoscopic colon cancer screening among women aged 50 and over, in NYC 2002.
Journal of community health 2008;33(1):10-21.
2008: Stephen Johnson; Suzanne Bakken ; Daniel Dine; Sookyung Hyun; Eneida A Mendonca; Frances Morrison; Tiffani J Bright; Tielman Van Vleck; Jesse Wrenn; Peter D Stetson
An electronic health record based on structured narrative.
Journal of the American Medical Informatics Association : JAMIA 2008;15(1):54-64.
2007: Michael Bales; Yves lussier; Stephen Johnson
Topological analysis of large-scale biomedical terminology structures.
Journal of the American Medical Informatics Association : JAMIA 2007;14(6):788-97.
2007: Philip Payne; Eneida A Mendonca; Stephen Johnson; Justin Starren
Conceptual knowledge acquisition in biomedicine: A methodological review.
Journal of biomedical informatics 2007;40(5):582-602.
2007: Stephen Johnson; Richard A Friedman
Bridging the gap between biological and clinical informatics in a graduate training program.
Journal of biomedical informatics 2007;40(1):59-66.
2007: Sharib A Khan; Rita Kukafka; Philip Payne; J Thomas Bigger; Stephen Johnson
A day in the life of a clinical research coordinator: observations from community practice settings.
Studies in health technology and informatics 2007;129(Pt 1):247-51.
2006: Thomas Chung; Rita Kukafka; Stephen Johnson
Reengineering clinical research with informatics.
Journal of investigative medicine : the official publication of the American Federation for Clinical Research 2006;54(6):327-33.
2006: Michael Bales; Stephen Johnson
Graph theoretic modeling of large-scale semantic networks.
Journal of biomedical informatics 2006;39(4):451-64.
2006: N Matsuoka; A Patki; Hemant K Tiwari; David Allison; Stephen Johnson; P K Gregersen; R L Leibel; Wendy Chung
Association of K121Q polymorphism in ENPP1 (PC-1) with BMI in Caucasian and African-American adults.
International journal of obesity (2005) 2006;30(2):233-7.
2006: Tiffani J Bright; Suzanne Bakken ; Stephen Johnson
Heuristic evaluation of eNote: an electronic notes system.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():864.
2006: Sharib A Khan; Philip Payne; Stephen Johnson; J Thomas Bigger; Rita Kukafka
Modeling clinical trials workflow in community practice settings.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():419-23.
2006: Sookyung Hyun; Suzanne Bakken ; Stephen Johnson
Markup of temporal information in electronic health records.
Studies in health technology and informatics 2006;122():907-8.
2006: Sookyung Hyun; Rosemary Ventura; Stephen Johnson; Suzanne Bakken
Is the Health Level 7/LOINC document ontology adequate for representing nursing documents?
Studies in health technology and informatics 2006;122():527-31.
2005: Suzanne Bakken ; Sookyung Hyun; Carol Friedman; Stephen Johnson
ISO reference terminology models for nursing: applicability for natural language processing of nursing narratives.
International journal of medical informatics 2005;74(7-8):615-22.
2005: Philip Payne; Stephen Johnson; Justin Starren; Hugh H Tilson; David Dowdy
Breaking the translational barriers: the value of integrating biomedical informatics and translational research.
Journal of investigative medicine : the official publication of the American Federation for Clinical Research 2005;53(4):192-200.
2005: Janet P Haas; Suzanne Bakken ; Tiffani J Bright; Genevieve B Melton; Peter D Stetson; Stephen Johnson
Clinicians' perceptions of usability of eNote.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():973.
2005: Jason S Shapiro; Suzanne Bakken ; Sookyung Hyun; Genevieve B Melton; Cara Schlegel; Stephen Johnson
Document ontology: supporting narrative documents in electronic health records.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():684-8.
2005: Frances P Morrison; Rita Kukafka; Stephen Johnson
Analyzing the structure and content of public health messages.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():540-4.
2005: George Hripcsak; Li Zhou; Simon Parsons; Amar K Das; Stephen Johnson
Modeling electronic discharge summaries as a simple temporal constraint satisfaction problem.
Journal of the American Medical Informatics Association : JAMIA 2005;12(1):55-63.
2004: William F Crowley; Louis Sherwood; Patricia Salber; David A Scheinberg; Harold Charles Slavkin; Hugh Tilson; E Albert Reece; Veronica Catanese; Stephen Johnson; Adrian S Dobs; Myron Genel; Allan Korn; Nancy E Reame; Robert Bonow; Jack Grebb; David Rimoin
Clinical research in the United States at a crossroads: proposal for a novel public-private partnership to establish a national clinical research enterprise.
JAMA : the journal of the American Medical Association 2004;291(9):1120-6.
2004: Yoonho Seol; David R Kaufman; Eneida A Mendonca; James J Cimino; Stephen Johnson
Scenario-based assessment of physicians' information needs.
Studies in health technology and informatics 2004;107(Pt 1):306-10.
2003: Rita Kukafka; Stephen Johnson; Allison Linfante; John Allegrante
Grounding a new information technology implementation framework in behavioral science: a systematic analysis of the literature on IT use.
Journal of biomedical informatics 2003;36(3):218-27.
2003: Nancy Sung; William F Crowley; Myron Genel; Patricia Salber; Lewis Sandy; Louis Sherwood; Stephen Johnson; Veronica Catanese; Hugh Tilson; Kenneth Getz; Elaine L Larson; David A Scheinberg; E Albert Reece; Harold Charles Slavkin; Adrian S Dobs; Jack Grebb; Rick A Martinez; Allan Korn; David Rimoin
Central challenges facing the national clinical research enterprise.
JAMA : the journal of the American Medical Association 2003;289(10):1278-87.
2003: Shamim Ara Mollah; Stephen Johnson
Automatic learning of the morphology of medical language using information compression.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():938.
2003: Stephen Johnson; David A Campbell; Michael Krauthammer; P Karina Tulipano; Eneida A Medonca; Carol Friedman; George Hripcsak
A native XML database design for clinical document research.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():883.
2003: Sookyung Hyun; Suzanne Bakken ; Carol Friedman; Stephen Johnson
Natural language processing challenges in HIV/AIDS clinic notes.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():872.
2003: Stephen Johnson
A framework for the biomedical informatics curriculum.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():331-5.
2002: Hongfang Liu; Stephen Johnson; Carol Friedman
Automatic resolution of ambiguous terms based on machine learning and conceptual relations in the UMLS.
Journal of the American Medical Informatics Association : JAMIA 2002;9(6):621-36.
2002: Di Wang; David R Kaufman; Eneida A Mendonca; Yoonho Seol; Stephen Johnson; James J Cimino
The cognitive demands of an innovative query user interface.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():850-4.
2002: Peter D Stetson; Stephen Johnson; Matthew Scotch; George Hripcsak
The sublanguage of cross-coverage.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():742-6.
2002: Michael Krauthammer; Stephen Johnson; George Hripcsak; David A Campbell; Carol Friedman
Representing nested semantic information in a linear string of text using XML.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():405-9.
2001: Eneida A Mendonca; James J Cimino; Stephen Johnson; Yoonho Seol
Accessing heterogeneous sources of evidence to answer clinical questions.
Journal of biomedical informatics 2001;34(2):85-98.
2001: Eneida A Mendonca; James J Cimino; Stephen Johnson
Using narrative reports to support a digital library.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():458-62.
2001: David A Campbell; Stephen Johnson
Comparing syntactic complexity in medical and non-medical corpora.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():90-4.
2000: Stephen Johnson; P Haug; C Curtis; T Defa; B Davoren; R Kolodner; B Monroe
Where are they now? CPR leaders assess their progress. Interview by Anne Zender.
Journal of AHIMA / American Health Information Management Association 2000;71(8):35-9.
2000: Justin Starren; Stephen Johnson
An object-oriented taxonomy of medical data presentations.
Journal of the American Medical Informatics Association : JAMIA 2000;7(1):1-20.
1999: FM Behlen; Stephen Johnson
Multicenter patient records research: security policies and tools.
Journal of the American Medical Informatics Association : JAMIA 1999;6(6):435-43.
1999: Stephen Johnson
A semantic lexicon for medical language processing.
Journal of the American Medical Informatics Association : JAMIA 1999;6(3):205-18.
1999: Stephen Johnson; D Chatziantoniou
Extended SQL for manipulating clinical warehouse data.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():819-23.
1999: David A Campbell; Stephen Johnson
A technique for semantic classification of unknown words using UMLS resources.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():716-20.
1999: FM Behlen; Stephen Johnson
Security architecture for multi-site patient records research.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():476-80.
1999: Yoonho Seol; Stephen Johnson; Justin Starren
Use of the Extensible Stylesheet Language (XSL) for medical data transformation.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1999;():142-6.
1998: Stephen Johnson
Conceptual graph grammar--a simple formalism for sublanguage.
Methods of information in medicine 1998;37(4-5):345-52.
1998: Adam Wilcox; George Hripcsak; Stephen Johnson; J J Hwang; M Wu
Developing online support for clinical information system developers: the FAQ approach.
Computers and biomedical research, an international journal 1998;31(2):112-21.
1997: Stephen Johnson; T Paul; A Khenina
Generic database design for patient management information.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1997;():22-6.
1996: Stephen Johnson
Generic data modeling for clinical repositories.
Journal of the American Medical Informatics Association : JAMIA 1996;3(5):328-39.
1996: George Hripcsak; paul clayton; Robert Jenders; James J Cimino; Stephen Johnson
Design of a clinical event monitor.
Computers and biomedical research, an international journal 1996;29(3):194-221.
1996: Stephen Johnson; Carol Friedman
Integrating data from natural language processing into a clinical information system.
Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium 1996;():537-41.
1995: George Hripcsak; Carol Friedman; P O Alderson; W DuMouchel; Stephen Johnson; paul clayton
Unlocking clinical data from narrative reports: a study of natural language processing.
Annals of internal medicine 1995;122(9):681-8.
1995: James J Cimino; Stephen Johnson; George Hripcsak; C L Hill; paul clayton
Managing vocabulary for a centralized clinical system.
Medinfo. MEDINFO 1995;8 Pt 1():117-20.
1995: B H Forman; James J Cimino; Stephen Johnson; Soumitra Sengupta; R Sideli; P Clayton
Applying a controlled medical terminology to a distributed, production clinical information system.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():421-5.
1995: R C Barrows; Stephen Johnson
A data model that captures clinical reasoning about patient problems.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():402-5.
1995: Carol Friedman; Stephen Johnson; B Forman; Justin Starren
Architectural requirements for a multipurpose natural language processor in the clinical environment.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():347-51.
1995: Robert Jenders; George Hripcsak; R V Sideli; W DuMouchel; H Zhang; James J Cimino; Stephen Johnson; E H Sherman; paul clayton
Medical decision support: experience with implementing the Arden Syntax at the Columbia-Presbyterian Medical Center.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():169-73.
1994: Carol Friedman; P O Alderson; J H Austin; James J Cimino; Stephen Johnson
A general natural-language text processor for clinical radiology.
Journal of the American Medical Informatics Association : JAMIA 1994;1(2):161-74.
1994: Soumitra Sengupta; paul clayton; P Molholt; R V Sideli; James J Cimino; George Hripcsak; Stephen Johnson; B Allen; M McCormack; C Hill
IAIMS and sharing.
International journal of bio-medical computing 1994;34(1-4):339-48.
1994: Stephen Johnson; George Hripcsak; J Chen; P Clayton
Accessing the Columbia Clinical Repository.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():281-5.
1994: James J Cimino; paul clayton; George Hripcsak; Stephen Johnson
Knowledge-based approaches to the maintenance of a large controlled medical terminology.
Journal of the American Medical Informatics Association : JAMIA 1994;1(1):35-50.
1993: R V Sideli; Stephen Johnson; paul clayton
Full-text document storage and retrieval in a clinical information system.
Topics in health information management 1993;13(4):36-50.
1993: James J Cimino; A Aguirre; Stephen Johnson; P Peng
Generic queries for meeting clinical information needs.
Bulletin of the Medical Library Association 1993;81(2):195-206.
1993: James J Cimino; Stephen Johnson; P Peng; A Aguirre
From ICD9-CM to MeSH using the UMLS: a how-to guide.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():730-4.
1993: George Hripcsak; Stephen Johnson; paul clayton
Desperately seeking data: knowledge base-database links.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():639-43.
1993: P Peng; A Aguirre; Stephen Johnson; James J Cimino
Generating MEDLINE search strategies using a librarian knowledge-based system.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():596-600.
1993: Stephen Johnson; A Aguirre; P Peng; James J Cimino
Interpreting natural language queries using the UMLS.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():294-8.
1992: James J Cimino; Stephen Johnson; A Aguirre; Nancy K Roderer; paul clayton
The MEDLINE Button.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1992;():81-5.
1992: G Hendrickson; R K Anderson; paul clayton; James J Cimino; George Hripcsak; Stephen Johnson; M McCormack; Soumitra Sengupta; Steven Shea; R Sideli
The integrated academic information management system at Columbia-Presbyterian Medical Center.
M.D. computing : computers in medical practice 1992;9(1):35-42.
1991: George Hripcsak; James J Cimino; Stephen Johnson; paul clayton
The Columbia-Presbyterian Medical Center decision-support system as a model for implementing the Arden Syntax.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1991;():248-52.