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Henry Baker

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Lori F Gentile; Cecelia Lopez; Frederick A Moore; Dina C Nacionales; Ricardo Ungaro; Amer Abouhamze; Darwin N Ang; Michael Armbruster; Henry Baker; Alex G Cuenca; Philip A Efron
Identification and description of a novel murine model for polytrauma and shock.
Philip A Efron; Lori Filichia Gentile; Huazhi Liu; Lawrence Lottenberg; Makesha Vernee Miggins; Lyle Linc Moldawer; Frederick Alan Moore; Henry Baker; Azra Bihorac; Alex Gervacio Cuenca; Darwin N Ang
A genomic analysis of Clostridium difficile infections in blunt trauma patients.
Elizabeth A Warner; Claudia Moreno; Kerri A O'Malley; Ronald G Tompkins; Mehmet Toner; Ricardo Ungaro; Amer Abouhamze; Henry Baker; Alex G Cuenca; Philip A Efron; Kindra M Kelly-Scumpia; Kenneth T Kotz; Jennifer D Lanz; M Cecilia Lopez; Larry C Martin; Lyle L Moldawer
Microfluidics-based capture of human neutrophils for expression analysis in blood and bronchoalveolar lavage.

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All Publications

2013: Lori F Gentile; Cecelia Lopez; Frederick A Moore; Dina C Nacionales; Ricardo Ungaro; Amer Abouhamze; Darwin N Ang; Michael Armbruster; Henry Baker; Alex G Cuenca; Philip A Efron
Identification and description of a novel murine model for polytrauma and shock.
Critical care medicine 2013;41(4):1075-85.
2013: Philip A Efron; Lori Filichia Gentile; Huazhi Liu; Lawrence Lottenberg; Makesha Vernee Miggins; Lyle Linc Moldawer; Frederick Alan Moore; Henry Baker; Azra Bihorac; Alex Gervacio Cuenca; Darwin N Ang
A genomic analysis of Clostridium difficile infections in blunt trauma patients.
The journal of trauma and acute care surgery 2013;74(1):334-8.
2011: Elizabeth A Warner; Claudia Moreno; Kerri A O'Malley; Ronald G Tompkins; Mehmet Toner; Ricardo Ungaro; Amer Abouhamze; Henry Baker; Alex G Cuenca; Philip A Efron; Kindra M Kelly-Scumpia; Kenneth T Kotz; Jennifer D Lanz; M Cecilia Lopez; Larry C Martin; Lyle L Moldawer
Microfluidics-based capture of human neutrophils for expression analysis in blood and bronchoalveolar lavage.
Laboratory investigation; a journal of technical methods and pathology 2011;91(12):1787-95.
2011: Vasudevan Bakthavatchalu; Indraneel Bhattacharyya; B F Boyce; Jeffrey L Ebersole; Richard J Lamont; M Cecilia Lopez; Jeffrey J Mans; A Meka; Sabapathi Sathishkumar; Henry Baker; Kesavalu Lakshmyya
Polymicrobial periodontal pathogen transcriptomes in calvarial bone and soft tissue.
Molecular oral microbiology 2011;26(5):303-20.
2011: Amanda D Rice; Peter C Turner; Jennifer E Embury; Lyle L Moldawer; Henry Baker; Richard W Moyer
Roles of vaccinia virus genes E3L and K3L and host genes PKR and RNase L during intratracheal infection of C57BL/6 mice.
Journal of virology 2011;85(1):550-67.
2010: Vasudevan Bakthavatchalu; A Meka; Sabapathi Sathishkumar; M Cecilia Lopez; Indraneel Bhattacharyya; B F Boyce; Jeffrey J Mans; Richard J Lamont; Henry Baker; Jeffrey L Ebersole; Lakshmyya Kesavalu
Tannerella forsythia infection-induced calvarial bone and soft tissue transcriptional profiles.
Molecular oral microbiology 2010;25(5):317-30.
2010: Vasudevan Bakthavatchalu; A Meka; Sabapathi Sathishkumar; M Cecilia Lopez; R K Verma; S M Wallet; Indraneel Bhattacharyya; B F Boyce; Jeffrey J Mans; Richard J Lamont; Henry Baker; Jeffrey L Ebersole; Lakshmyya Kesavalu
Molecular characterization of Treponema denticola infection-induced bone and soft tissue transcriptional profiles.
Molecular oral microbiology 2010;25(4):260-74.
2010: Azra Bihorac; Matthew J Delano; jesse schold; M Cecilia Lopez; Avery B Nathens; Ronald V Maier; A Joseph Layon; Henry Baker; Lyle L Moldawer
Incidence, clinical predictors, genomics, and outcome of acute kidney injury among trauma patients.
Annals of surgery 2010;252(1):158-65.
2010: A Meka; Vasudevan Bakthavatchalu; Sabapathi Sathishkumar; M Cecilia Lopez; R K Verma; S M Wallet; I Bhattacharyya; B F Boyce; Martin Handfield; R J Lamont; Henry Baker; Jeffrey L Ebersole; Lakshmyya Kesavalu
Porphyromonas gingivalis infection-induced tissue and bone transcriptional profiles.
Molecular oral microbiology 2010;25(1):61-74.
2009: Viktoria Bogner; Henry Baker; Karl-Georg Kanz; Lyle L Moldawer; Wolf Mutschler; Peter Biberthaler
Hemorrhage and subsequent allogenic red blood cell transfusion are associated with characteristic monocyte messenger RNA expression patterns in patients after multiple injury-a genome wide view.
The Journal of trauma 2009;67(4):792-801.
2009: Jeffrey J Mans; Kate von Lackum; Cassandra Dorsey; Shaun Willis; Shannon M Wallet; Henry Baker; Richard J Lamont; Martin Handfield
The degree of microbiome complexity influences the epithelial response to infection.
BMC genomics 2009;10():380.
2009: Eric Bartee; Mohamed R Mohamed; M Cecilia Lopez; Henry Baker; Grant McFadden
The addition of tumor necrosis factor plus beta interferon induces a novel synergistic antiviral state against poxviruses in primary human fibroblasts.
Journal of virology 2009;83(2):498-511.
2008: Yoshiaki Hasegawa; Gena Tribble; Henry Baker; Jeffrey J Mans; Martin Handfield; Richard J Lamont
Role of Porphyromonas gingivalis SerB in gingival epithelial cell cytoskeletal remodeling and cytokine production.
Infection and immunity 2008;76(6):2420-7.
2008: Aman Russom; Palaniappan Sethu; daniel irimia; Michael N Mindrinos; Steve E Calvano; Iris Garcia; Celeste Finnerty; Cynthia Tannahill; Amer Abouhamze; Julie Wilhelmy; M Cecilia López; Henry Baker; David N Herndon; Stephen F Lowry; Ronald V Maier; Ronald W Davis; Lyle L Moldawer; Ronald G Tompkins; Mehmet Toner
Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients.
Clinical chemistry 2008;54(5):891-900.
2008: Corinna Burger; M Cecilia Lopez; Henry Baker; Ronald J Mandel; Nick Muzyczka
Genome-wide analysis of aging and learning-related genes in the hippocampal dentate gyrus.
Neurobiology of learning and memory 2008;89(4):379-96.
2008: Martin Handfield; Henry Baker; Richard J Lamont
Beyond good and evil in the oral cavity: insights into host-microbe relationships derived from transcriptional profiling of gingival cells.
Journal of dental research 2008;87(3):203-23.
2008: James A Lederer; Bernard H Brownstein; M Cecilia Lopez; Sandra MacMillan; Adam J Delisle; Malcolm MacConmara; Mashkoor Choudhry; wenzhong xiao; Steven Lekousi; J Perren Cobb; Henry Baker; John A Mannick; Irshad H Chaudry
Comparison of longitudinal leukocyte gene expression after burn injury or trauma-hemorrhage in mice.
Physiological genomics 2008;32(3):299-310.
2007: Jason R Rock; M Cecilia Lopez; Henry Baker; Brian D Harfe
Identification of genes expressed in the mouse limb using a novel ZPA microarray approach.
Gene expression patterns : GEP 2007;8(1):19-26.
2007: Rebecca L Skalsky; Mark A Samols; Karlie B Plaisance; Isaac W Boss; Alberto Riva; M Cecilia Lopez; Henry Baker; Rolf Renne
Kaposi's sarcoma-associated herpesvirus encodes an ortholog of miR-155.
Journal of virology 2007;81(23):12836-45.
2007: Guillermo Escobar; Aaron M Cheng; Ernest E Moore; Jeffrey L Johnson; Cynthia L Tannahill; Henry Baker; Lyle L Moldawer; Anirban Banerjee
Stored packed red blood cell transfusion up-regulates inflammatory gene expression in circulating leukocytes.
Annals of surgery 2007;246(1):129-34.
2007: Mark A Samols; Rebecca L Skalsky; Ann M Maldonado; Alberto Riva; M Cecilia Lopez; Henry Baker; Rolf Renne
Identification of cellular genes targeted by KSHV-encoded microRNAs.
PLoS pathogens 2007;3(5):e65.
2007: Viktoria Bogner; Chlodwig Kirchhoff; Henry Baker; Julia Stegmaier; Lyle L Moldawer; Wolf Mutschler; Peter Biberthaler
Gene expression profiles are influenced by ISS, MOF, and clinical outcome in multiple injured patients: a genome-wide comparative analysis.
Langenbeck's archives of surgery / Deutsche Gesellschaft für Chirurgie 2007;392(3):255-65.
2007: Yoshiaki Hasegawa; Jeffrey J Mans; Song Mao; M Cecilia Lopez; Henry Baker; Martin Handfield; Richard J Lamont
Gingival epithelial cell transcriptional responses to commensal and opportunistic oral microbial species.
Infection and immunity 2007;75(5):2540-7.
2007: Corinna Burger; M Cecilia López; Joyce A Feller; Henry Baker; Nicholas Muzyczka; Ronald J Mandel
Changes in transcription within the CA1 field of the hippocampus are associated with age-related spatial learning impairments.
Neurobiology of learning and memory 2007;87(1):21-41.
2006: Krzysztof Laudanski; Carol Miller-Graziano; wenzhong xiao; Michael N Mindrinos; Daniel R Richards; Asit De; Lyle L Moldawer; Ronald V Maier; Paul E Bankey; Henry Baker; Bernard H Brownstein; J Perren Cobb; Steve E Calvano; Ronald W Davis; Ronald G Tompkins
Cell-specific expression and pathway analyses reveal alterations in trauma-related human T cell and monocyte pathways.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(42):15564-9.
2006: Jeffrey J Mans; Henry Baker; D Oda; Richard J Lamont; Martin Handfield
Distinctive characteristics of transcriptional profiles from two epithelial cell lines upon interaction with Actinobacillus actinomycetemcomitans.
Oral microbiology and immunology 2006;21(4):261-7.
2006: Jacqueline Abranches; Melissa M Candella; Zezhang T Wen; Henry Baker; Robert A Burne
Different roles of EIIABMan and EIIGlc in regulation of energy metabolism, biofilm development, and competence in Streptococcus mutans.
Journal of bacteriology 2006;188(11):3748-56.
2006: Zezhang T Wen; Henry Baker; Robert A Burne
Influence of BrpA on critical virulence attributes of Streptococcus mutans.
Journal of bacteriology 2006;188(8):2983-92.
2006: Bernard H Brownstein; Tanya Logvinenko; James A Lederer; J Perren Cobb; William J Hubbard; Irshad H Chaudry; Daniel G Remick; Henry Baker; wenzhong xiao; John A Mannick
Commonality and differences in leukocyte gene expression patterns among three models of inflammation and injury.
Physiological genomics 2006;24(3):298-309.
2006: Renita Handayani; Lori Rice; Yuehua Cui; Theresa Medrano; Von G Samedi; Henry Baker; Nancy J Szabo; Kathleen T Shiverick
Soy isoflavones alter expression of genes associated with cancer progression, including interleukin-8, in androgen-independent PC-3 human prostate cancer cells.
The Journal of nutrition 2006;136(1):75-82.
2005: Violetta Zujovic; Defang Luo; Henry Baker; M Cecilia Lopez; Kelly R Miller; Wolfgang J Streit; Jeffrey K Harrison
The facial motor nucleus transcriptional program in response to peripheral nerve injury identifies Hn1 as a regeneration-associated gene.
Journal of neuroscience research 2005;82(5):581-91.
2005: Robert J Feezor; Angela Cheng; Heather N Paddock; Henry Baker; Lyle L Moldawer
Functional genomics and gene expression profiling in sepsis: beyond class prediction.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2005;41 Suppl 7():S427-35.
2005: Steve E Calvano; wenzhong xiao; Daniel R Richards; Felciano Ramon; Henry Baker; Raymond J Cho; Richard O Chen; Bernard H Brownstein; J Perren Cobb; S Kevin Tschoeke; Carol Miller-Graziano; Lyle L Moldawer; Michael N Mindrinos; Ronald W Davis; Ronald G Tompkins; Stephen F Lowry
A network-based analysis of systemic inflammation in humans.
Nature 2005;437(7061):1032-7.
2005: Hironori Tsujimoto; Takefumi Uchida; Philip A Efron; Philip O Scumpia; Amrisha Verma; Tadashi Matsumoto; Sven K Tschoeke; Ricardo Ungaro; Satoshi Ono; Shuhji Seki; Michael J Clare-Salzler; Henry Baker; Hidetaka Mochizuki; Reuben Ramphal; Lyle L Moldawer
Flagellin enhances NK cell proliferation and activation directly and through dendritic cell-NK cell interactions.
Journal of leukocyte biology 2005;78(4):888-97.
2005: Peter Biberthaler; Viktoria Bogner; Henry Baker; M Cecilia López; Peter Neth; Karl-Georg Kanz; Wolf Mutschler; Marianne Jochum; Lyle L Moldawer
Genome-wide monocytic mRNA expression in polytrauma patients for identification of clinical outcome.
Shock (Augusta, Ga.) 2005;24(1):11-9.
2005: Martin Handfield; Jeffrey J Mans; Gaolin Zheng; M Cecilia Lopez; Song Mao; Ann Progulske-Fox; Giri Narasimhan; Henry Baker; Richard J Lamont
Distinct transcriptional profiles characterize oral epithelium-microbiota interactions.
Cellular microbiology 2005;7(6):811-23.
2005: Philip A Efron; Hironori Tsujimoto; Frances Bahjat; Ricardo Ungaro; Justin Debernardis; Cynthia L Tannahill; Henry Baker; Carl K Edwards; Lyle L Moldawer
Differential maturation of murine bone-marrow derived dendritic cells with lipopolysaccharide and tumor necrosis factor-alpha.
Journal of endotoxin research 2005;11(3):145-60.
2004: Robert J Feezor; Henry Baker; Michael N Mindrinos; Doug Hayden; Cynthia L Tannahill; Bernard H Brownstein; Adrian Fay; Sandra MacMillan; Jason Laramie; wenzhong xiao; Lyle L Moldawer; J Perren Cobb; Krzysztof Laudanski; Carol Miller-Graziano; Ronald V Maier; David Schoenfeld; Ronald W Davis; Ronald G Tompkins
Whole blood and leukocyte RNA isolation for gene expression analyses.
Physiological genomics 2004;19(3):247-54.
2004: Weihui Wu; Hassan Badrane; Shiwani Arora; Henry Baker; Shouguang Jin
MucA-mediated coordination of type III secretion and alginate synthesis in Pseudomonas aeruginosa.
Journal of bacteriology 2004;186(22):7575-85.
2004: Carter R Coberley; James J Kohler; Joseph Brown; Joseph T Oshier; Henry Baker; Michael P Popp; John W Sleasman; Maureen M Goodenow
Impact on genetic networks in human macrophages by a CCR5 strain of human immunodeficiency virus type 1.
Journal of virology 2004;78(21):11477-86.
2004: Wei Lian; Sally A Litherland; Hassan Badrane; Weihong Tan; Donghai Wu; Henry Baker; Paul A Gulig; Daniel V Lim; Shouguang Jin
Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles.
Analytical biochemistry 2004;334(1):135-44.
2004: Un-Hwan Ha; Jaewha Kim; Hassan Badrane; Jinghua Jia; Henry Baker; Donghai Wu; Shouguang Jin
An in vivo inducible gene of Pseudomonas aeruginosa encodes an anti-ExsA to suppress the type III secretion system.
Molecular microbiology 2004;54(2):307-20.
2004: Margaret J Velardo; Corinna Burger; Philip R Williams; Henry Baker; M Cecilia López; Thomas H Mareci; Todd E White; Nicholas Muzyczka; Paul J Reier
Patterns of gene expression reveal a temporally orchestrated wound healing response in the injured spinal cord.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2004;24(39):8562-76.
2004: Isabel Virella-Lowell; John-David Herlihy; Barry Liu; Cecilia Lopez; Pedro Cruz; Chris Muller; Henry Baker; Terence R Flotte
Effects of CFTR, interleukin-10, and Pseudomonas aeruginosa on gene expression profiles in a CF bronchial epithelial cell Line.
Molecular therapy : the journal of the American Society of Gene Therapy 2004;10(3):562-73.
2004: Robert J Feezor; Henry Baker; wenzhong xiao; W Anthony Lee; Thomas S Huber; Michael N Mindrinos; Raymond A Kim; Laurence Ruiz-Taylor; Lyle L Moldawer; Ronald W Davis; James M Seeger
Genomic and proteomic determinants of outcome in patients undergoing thoracoabdominal aortic aneurysm repair.
Journal of immunology (Baltimore, Md. : 1950) 2004;172(11):7103-9.
2004: Robert J Feezor; Heather N Paddock; Henry Baker; Juan C Varela; Joyce Barreda; Lyle L Moldawer; Gregory Schultz; David W Mozingo
Temporal patterns of gene expression in murine cutaneous burn wound healing.
Physiological genomics 2004;16(3):341-8.
2003: Heather N Paddock; Gregory Schultz; Henry Baker; Juan C Varela; Elizabeth A Beierle; Lyle L Moldawer; David W Mozingo
Analysis of gene expression patterns in human postburn hypertrophic scars.
The Journal of burn care & rehabilitation 2003;24(6):371-7.
2003: Lauren M Brum; M Cecilia Lopez; Juan C Varela; Henry Baker; Richard W Moyer
Microarray analysis of A549 cells infected with rabbitpox virus (RPV): a comparison of wild-type RPV and RPV deleted for the host range gene, SPI-1.
Virology 2003;315(2):322-34.
2003: Robert J Feezor; Caroline Oberholzer; Henry Baker; Daniela Novick; Menachem Rubinstein; Lyle L Moldawer; John P Pribble; Sonia Souza; Charles A Dinarello; Wolfgang Ertel; Andreas Oberholzer
Molecular characterization of the acute inflammatory response to infections with gram-negative versus gram-positive bacteria.
Infection and immunity 2003;71(10):5803-13.
2002: Lori Rice; Von G Samedi; Theresa Medrano; Carol A Sweeney; Henry Baker; Anne Stenstrom; Jaime Furman; Kathleen T Shiverick
Mechanisms of the growth inhibitory effects of the isoflavonoid biochanin A on LNCaP cells and xenografts.
The Prostate 2002;52(3):201-12.
2002: Juan C Varela; Michael H Goldstein; Henry Baker; Gregory Schultz
Microarray analysis of gene expression patterns during healing of rat corneas after excimer laser photorefractive keratectomy.
Investigative ophthalmology & visual science 2002;43(6):1772-82.
2000: M C López; Henry Baker
Understanding the growth phenotype of the yeast gcr1 mutant in terms of global genomic expression patterns.
Journal of bacteriology 2000;182(17):4970-8.
1999: T Sato; M Cecilia Lopez; S Sugioka; Yoshifumi Jigami; Henry Baker; H Uemura
The E-box DNA binding protein Sgc1p suppresses the gcr2 mutation, which is involved in transcriptional activation of glycolytic genes in Saccharomyces cerevisiae.
FEBS letters 1999;463(3):307-11.
1998: M C López; Jeffrey B Smerage; Henry Baker
Multiple domains of repressor activator protein 1 contribute to facilitated binding of glycolysis regulatory protein 1.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(24):14112-7.
1997: H Uemura; M Koshio; Y Inoue; M Cecilia Lopez; Henry Baker
The role of Gcr1p in the transcriptional activation of glycolytic genes in yeast Saccharomyces cerevisiae.
Genetics 1997;147(2):521-32.
1996: C M Drazinic; Jeffrey B Smerage; M C López; Henry Baker
Activation mechanism of the multifunctional transcription factor repressor-activator protein 1 (Rap1p).
Molecular and cellular biology 1996;16(6):3187-96.
1996: M A Huie; Henry Baker
DNA-binding properties of the yeast transcriptional activator, Gcr1p.
Yeast (Chichester, England) 1996;12(4):307-17.
1994: Y A Henry; M C López; J M Gibbs; A Chambers; Susan M Kingsman; Henry Baker; C A Stanway
The yeast protein Gcr1p binds to the PGK UAS and contributes to the activation of transcription of the PGK gene.
Molecular & general genetics : MGG 1994;245(4):506-11.
1994: C A Stanway; J M Gibbs; Stephen E Kearsey; M C López; Henry Baker
The yeast co-activator GAL11 positively influences transcription of the phosphoglycerate kinase gene, but only when RAP1 is bound to its upstream activation sequence.
Molecular & general genetics : MGG 1994;243(2):207-14.
1993: M C López; Jeffrey B Smerage; Henry Baker
A simplified vacuum blotting method for genomic sequencing and in vivo footprinting.
BioTechniques 1993;15(3):362-3.
1993: E W Scott; Henry Baker
Concerted action of the transcriptional activators REB1, RAP1, and GCR1 in the high-level expression of the glycolytic gene TPI.
Molecular and cellular biology 1993;13(1):543-50.
1992: M A Huie; E W Scott; C M Drazinic; M Cecilia Lopez; I K Hornstra; Thomas P Yang; Henry Baker
Characterization of the DNA-binding activity of GCR1: in vivo evidence for two GCR1-binding sites in the upstream activating sequence of TPI of Saccharomyces cerevisiae.
Molecular and cellular biology 1992;12(6):2690-700.
1991: Henry Baker
GCR1 of Saccharomyces cerevisiae encodes a DNA binding protein whose binding is abolished by mutations in the CTTCC sequence motif.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(21):9443-7.
1990: E W Scott; Heather Elizabeth Allison; Henry Baker
Characterization of TPI gene expression in isogeneic wild-type and gcr1-deletion mutant strains of Saccharomyces cerevisiae.
Nucleic acids research 1990;18(23):7099-107.