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manuel garber

Research Profile

Phenomena

Evolution, Molecular

Procedures

Physiology

Living Beings

Mouse

Genes & Molecular Sequences

Chemicals & Drugs

Anatomy

Concepts & Ideas

Occupations

Genomics

Co-author Network

Publications

TOP 3
Maite Huarte; Mitchell Guttman; David M. Feldser; manuel garber; Magdalena J Koziol; Daniela Kenzelmann-Broz; Ahmad M Khalil; Or Zuk; Ido Amit; Michal Rabani; Laura D Attardi; Aviv Regev; Eric S Lander; Tyler Jacks; John L Rinn
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
Mitchell Guttman; manuel garber; Joshua Z Levin; Julie Donaghey; James Robinson; Xian Adiconis; Lin Fan; Magdalena J Koziol; Andreas Gnirke; Chad Nusbaum; John L Rinn; Eric S Lander; Aviv Regev
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.
Ido Amit; manuel garber; Nicolas Chevrier; Ana Paula Leite; Yoni Donner; Thomas Eisenhaure; Mitchell Guttman; Jennifer K Grenier; Weibo Li; Or Zuk; Lisa A Schubert; Brian Birditt; Tal Shay; Alon Goren; Xiaolan Zhang; Zachary Smith; Raquel Deering; Rebecca C McDonald; Moran Cabili; Bradley E Bernstein; John L Rinn; Alex Meissner; David E Root; Nir Hacohen; Aviv Regev
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.

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All Publications

2010: Maite Huarte; Mitchell Guttman; David M. Feldser; manuel garber; Magdalena J Koziol; Daniela Kenzelmann-Broz; Ahmad M Khalil; Or Zuk; Ido Amit; Michal Rabani; Laura D Attardi; Aviv Regev; Eric S Lander; Tyler Jacks; John L Rinn
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
Cell 2010;142(3):409-19.
2010: Mitchell Guttman; manuel garber; Joshua Z Levin; Julie Donaghey; James Robinson; Xian Adiconis; Lin Fan; Magdalena J Koziol; Andreas Gnirke; Chad Nusbaum; John L Rinn; Eric S Lander; Aviv Regev
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.
Nature biotechnology 2010;28(5):503-10.
2009: Ido Amit; manuel garber; Nicolas Chevrier; Ana Paula Leite; Yoni Donner; Thomas Eisenhaure; Mitchell Guttman; Jennifer K Grenier; Weibo Li; Or Zuk; Lisa A Schubert; Brian Birditt; Tal Shay; Alon Goren; Xiaolan Zhang; Zachary Smith; Raquel Deering; Rebecca C McDonald; Moran Cabili; Bradley E Bernstein; John L Rinn; Alex Meissner; David E Root; Nir Hacohen; Aviv Regev
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.
Science (New York, N.Y.) 2009;326(5950):257-63.
2009: Ahmad M Khalil; Mitchell Guttman; Maite Huarte; manuel garber; Arjun Raj; Dianali Rivea Morales; Kelly Thomas; Aviva Presser; Bradley E Bernstein; Alexander van Oudenaarden; Aviv Regev; Eric S Lander; John L Rinn
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(28):11667-72.
2009: manuel garber; Mitchell Guttman; Michele Clamp; Michael C Zody; Nir Friedman; Xiaohui Xie
Identifying novel constrained elements by exploiting biased substitution patterns.
Bioinformatics (Oxford, England) 2009;25(12):i54-62.
2009: Mitchell Guttman; Ido Amit; manuel garber; Courtney French; Michael F Lin; David M. Feldser; Maite Huarte; Or Zuk; Bryce W Carey; John P Cassady; Moran N Cabili; Rudolf Jaenisch; Tarjei S Mikkelsen; Tyler Jacks; Nir Hacohen; Bradley E Bernstein; Manolis Kellis; Aviv Regev; John L Rinn; Eric S Lander
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Nature 2009;458(7235):223-7.
2009: manuel garber; Michael C Zody; Harindra M Arachchi; Aaron Berlin; Sante Gnerre; Lisa M Green; Niall Lennon; Chad Nusbaum
Closing gaps in the human genome using sequencing by synthesis.
Genome biology 2009;10(6):R60.
2008: William Brockman; Pablo Alvarez; Sarah Young; manuel garber; Georgia Giannoukos; William L Lee; Carsten Russ; Eric S Lander; Chad Nusbaum; David B Jaffe
Quality scores and SNP detection in sequencing-by-synthesis systems.
Genome research 2008;18(5):763-70.
2007: Tarjei S Mikkelsen; Matthew J Wakefield; Bronwen Aken; Chris T Amemiya; Jean L Chang; Shannon Duke; manuel garber; Andrew Gentles; Leo Goodstadt; Andreas Heger; Jerzy Jurka; Michael Kamal; Evan Mauceli; Stephen M J Searle; Ted Sharpe; Michelle L Baker; Mark A Batzer; Panayiotis V Benos; Katherine Belov; Michele Clamp; April Cook; James Cuff; Radhika Das; Lance Davidow; Janine Deakin; Melissa Fazzari; Jacob L Glass; Manfred Grabherr; John M Greally; Wanjun Gu; Timothy A Hore; Gavin A Huttley; Michael Kleber; Randy L Jirtle; Edda Koina; Jeannie T Lee; Shaun Mahony; Marco A Marra; Robert D Miller; Robert D Nicholls; Mayumi Oda; Anthony T Papenfuss; Zuly E Parra; David D Pollock; David A Ray; Jacqueline E Schein; Terence P Speed; Katherine Thompson; John VandeBerg; Claire M Wade; Jerilyn A Walker; Paul D Waters; Caleb Webber; Jennifer R Weidman; Xiaohui Xie; Michael C Zody; Jennifer A Marshall Graves; Chris P Ponting; Matthew Breen; Paul B Samollow; Eric S Lander; Kerstin Lindblad-Toh
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.
Nature 2007;447(7141):167-77.
2006: Michael C Zody; manuel garber; David J Adams; Ted Sharpe; Jennifer Harrow; James R Lupski; Christine Nicholson; Steven M Searle; Laurens Wilming; Sarah K Young; Amr Abouelleil; Nicole R Allen; Weimin Bi; Toby Bloom; Mark L Borowsky; Boris E Bugalter; Jonathan Butler; Jean L Chang; Chao-Kung Chen; April Cook; Benjamin Corum; Christina A Cuomo; Pieter J de Jong; David DeCaprio; Ken Dewar; Michael FitzGerald; James Gilbert; Richard Gibson; Sante Gnerre; Steven Goldstein; Darren V Grafham; Russell Grocock; Nabil Hafez; Daniel S Hagopian; Elizabeth Hart; Catherine Hosage Norman; Sean Humphray; David B Jaffe; Matt Jones; Michael Kamal; Varsha K Khodiyar; Kurt LaButti; Gavin Laird; Jessica Lehoczky; Xiaohong Liu; Tashi Lokyitsang; Jane Loveland; Annie Lui; Pendexter Macdonald; John E Major; Lucy Matthews; Evan Mauceli; Steven A McCarroll; Atanas H Mihalev; Jonathan Mudge; Cindy Nguyen; Robert Nicol; Sinéad B O'Leary; Kazutoyo Osoegawa; David C Schwartz; Charles Shaw-Smith; Pawel Stankiewicz; Charles Steward; David Swarbreck; Vijay Venkataraman; Charles A Whittaker; Xiaoping Yang; Andrew R Zimmer; Allan Bradley; Tim Hubbard; Bruce W Birren; Jane Rogers; Eric S Lander; Chad Nusbaum
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage.
Nature 2006;440(7087):1045-9.
2006: Michael C Zody; manuel garber; Ted Sharpe; Sarah K Young; Lee Rowen; Keith O'Neill; Charles A Whittaker; Michael Kamal; Jean L Chang; Christina A Cuomo; Ken Dewar; Michael G FitzGerald; Chinnappa D Kodira; Anup Madan; Shizhen Qin; Xiaoping Yang; Nissa Abbasi; Amr Abouelleil; Harindra M Arachchi; Lida Baradarani; Brian Birditt; Scott Bloom; Toby Bloom; Mark L Borowsky; Jeremy Burke; Jonathan Butler; April Cook; Kurt DeArellano; David DeCaprio; Lester Dorris; Monica Dors; Evan E Eichler; Reinhard Engels; Jessica Fahey; Peter Fleetwood; Cynthia Friedman; Gary Gearin; Jennifer L Hall; Grace Hensley; Ericka Johnson; Charlien Jones; Asha Kamat; Amardeep Kaur; Devin P Locke; Anuradha Madan; Glen Munson; David B Jaffe; Annie Lui; Pendexter Macdonald; Evan Mauceli; Jerome W Naylor; Ryan Nesbitt; Robert Nicol; Sinéad B O'Leary; Amber Ratcliffe; Steven Rounsley; Xinwei She; Katherine M B Sneddon; Sandra Stewart; Carrie Sougnez; Sabrina M Stone; Kerri Topham; Dascena Vincent; Shunguang Wang; Andrew R Zimmer; Bruce W Birren; Leroy Hood; Eric S Lander; Chad Nusbaum
Analysis of the DNA sequence and duplication history of human chromosome 15.
Nature 2006;440(7084):671-5.
2006: Chad Nusbaum; Tarjei S Mikkelsen; Michael C Zody; Shuichi Asakawa; Stefan Taudien; manuel garber; Chinnappa D Kodira; Mary G Schueler; Atsushi Shimizu; Charles A Whittaker; Jean L Chang; Christina A Cuomo; Ken Dewar; Michael G FitzGerald; Xiaoping Yang; Nicole R Allen; Scott Anderson; Teruyo Asakawa; Karin Blechschmidt; Toby Bloom; Mark L Borowsky; Jonathan Butler; April Cook; Benjamin Corum; Kurt DeArellano; David DeCaprio; Kathleen T Dooley; Lester Dorris; Reinhard Engels; Gernot Glöckner; Nabil Hafez; Daniel S Hagopian; Jennifer L Hall; Sabine K Ishikawa; David B Jaffe; Asha Kamat; Jun Kudoh; Rüdiger Lehmann; Tashi Lokitsang; Pendexter Macdonald; John E Major; Charles Matthews; Evan Mauceli; Uwe Menzel; Atanas H Mihalev; Shinsei Minoshima; Yuji Murayama; Jerome W Naylor; Robert Nicol; Cindy Nguyen; Sinéad B O'Leary; Keith O'Neill; Stephen C J Parker; Andreas Polley; Christina K Raymond; Kathrin Reichwald; Joseph Rodriguez; Takashi Sasaki; Markus Schilhabel; Roman Siddiqui; Cherylyn L Smith; Tam P Sneddon; Jessica A Talamas; Pema Tenzin; Kerri Topham; Vijay Venkataraman; Gaiping Wen; Satoru Yamazaki; Sarah K Young; Qiandong Zeng; Andrew R Zimmer; Andre Rosenthal; Bruce W Birren; Matthias Platzer; Nobuyoshi Shimizu; Eric S Lander
DNA sequence and analysis of human chromosome 8.
Nature 2006;439(7074):331-5.