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Steven Brown

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Jerry M Parks; Mircea Podar; Yun Qian; Jeremy C Smith; Steven D Smith; Stephen J Tomanicek; Judy D Wall; Craig C Brandt; Romain Bridou; Steven D Brown; Dwayne A Elias; Richard A Hurt; Alexander Johs; Anthony V Palumbo; Liyuan Liang
The genetic basis for bacterial mercury methylation.
Steven D Brown; Adam P Arkin; Adam M Deutschbauer; Dwayne A Elias; Terry C Hazen; Sagar M Utturkar; Romy Chakraborty
Draft Genome Sequence for Desulfovibrio africanus Strain PCS.
Steven D Brown; Mitchel J Doktycz; Courtney M Johnson; Dawn M Klingeman; Miriam L Land; Tse-Yuan Lu; Stanton L Martin; Christopher Schadt; Sagar M Utturkar; Dale A Pelletier
Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

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All Publications

2013: Jerry M Parks; Mircea Podar; Yun Qian; Jeremy C Smith; Steven D Smith; Stephen J Tomanicek; Judy D Wall; Craig C Brandt; Romain Bridou; Steven D Brown; Dwayne A Elias; Richard A Hurt; Alexander Johs; Anthony V Palumbo; Liyuan Liang
The genetic basis for bacterial mercury methylation.
Science (New York, N.Y.) 2013;339(6125):1332-5.
2013: Steven D Brown; Adam P Arkin; Adam M Deutschbauer; Dwayne A Elias; Terry C Hazen; Sagar M Utturkar; Romy Chakraborty
Draft Genome Sequence for Desulfovibrio africanus Strain PCS.
Genome announcements 2013;1(2):e0014413.
2012: Steven D Brown; Mitchel J Doktycz; Courtney M Johnson; Dawn M Klingeman; Miriam L Land; Tse-Yuan Lu; Stanton L Martin; Christopher Schadt; Sagar M Utturkar; Dale A Pelletier
Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.
Journal of bacteriology 2012;194(21):5991-3.
2012: Steven D Brown; Adam P Arkin; Terry C Hazen; Richard A Hurt; Courtney M Johnson; Dawn M Klingeman; Miriam L Land; Jennifer J Mosher; Anthony V Palumbo; Tommy J Phelps; Mircea Podar; Sagar M Utturkar; Zamin K Yang; Dwayne A Elias
Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.
Journal of bacteriology 2012;194(18):5147-8.
2012: Steven D Brown; Courtney M Johnson; Martin Keller; Dawn M Klingeman; Raphael Lamed; Miriam L Land; Ely Morag; Yuval Shoham; Sagar M Utturkar; Zamin Yang; Ilya Borovok; Edward A Bayer
Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.
Journal of bacteriology 2012;194(12):3290-1.
2012: Steven D Brown; Thilini Ariyawansa; Courtney M Johnson; Dawn M Klingeman; Miriam L Land; Anthony V Palumbo; Nicolai Panikov; Sagar M Utturkar; Slava S Epstein
Draft genome sequence for Microbacterium laevaniformans strain OR221, a bacterium tolerant to metals, nitrate, and low pH.
Journal of bacteriology 2012;194(12):3279-80.
2012: James G Moberly; Anthony V Palumbo; Carrie L Miller; Abir Biswas; Craig C Brandt; Steven D Brown; Dwayne A Elias
Role of morphological growth state and gene expression in Desulfovibrio africanus strain Walvis Bay mercury methylation.
Environmental science & technology 2012;46(9):4926-32.
2012: Mustafa H Syed; Steven D Brown; Michael D Galloway; Doug Hyatt; Tatiana V Karpinets; Michael R Leuze; Steve Moulton; M Parang; Byung H Park; Edward C Uberbacher
BESC knowledgebase public portal.
Bioinformatics (Oxford, England) 2012;28(5):750-1.
2012: Richard A Hurt; Anthony V Palumbo; Mircea Podar; Steven D Brown; Dwayne A Elias
Sequencing intractable DNA to close microbial genomes.
PloS one 2012;7(7):e41295.
2012: Shihui Yang; Zamin K Yang; Lezlee Dice; Nancy L Engle; Richard J Giannone; Robert L Hettich; Timothy J Tschaplinski; Steven D Brown
Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.
BMC genomics 2012;13():336.
2012: Shihui Yang; Dawn M Klingeman; Steven D Brown
Ethanol-tolerant gene identification in Clostridium thermocellum using pyro-resequencing for metabolic engineering.
Methods in molecular biology (Clifton, N.J.) 2012;834():111-36.
2011: Xiongjun Shao; Mingjun Zhu; Steven D Brown; Adam M Guss; Jonathan R Mielenz; Babu Raman; Lee R Lynd
Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum.
Applied microbiology and biotechnology 2011;92(3):641-52.
2011: Archana Chauhan; Tatiana V Karpinets; Alice C Layton; Steven Ripp; Abby E Smartt; Daniel E Williams; Steven D Brown; Gary S Sayler
Draft genome sequence of the polycyclic aromatic hydrocarbon-degrading, genetically engineered bioluminescent bioreporter Pseudomonas fluorescens HK44.
Journal of bacteriology 2011;193(18):5009-10.
2011: Steven D Brown; Adam M Guss; Tatiana V Karpinets; Martin Keller; Dawn M Klingeman; Miriam L Land; Ashwini Bhandiwad; Jonathan R Mielenz; Jerry M Parks; Babu Raman; Miguel Rodriguez; Xiongjun Shao; Jeremy C Smith; Nikolai Smolin; Shihui Yang; Lee R Lynd
Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(33):13752-7.
2011: Steven D Brown; Matthew B Begemann; Lynne A Goodwin; Cliff S Han; Loren J Hauser; Miriam L Land; Melanie R Mormile; Samuel Pitluck; Judy D Wall; Dwayne A Elias
Complete genome sequence of the haloalkaliphilic, hydrogen-producing bacterium Halanaerobium hydrogeniformans.
Journal of bacteriology 2011;193(14):3682-3.
2011: Cynthia C Gilmour; Amy M Kucken; Anthony V Palumbo; Christopher W Schadt; Steven D Brown; Dwayne A Elias; Judy D Wall
Sulfate-reducing bacterium Desulfovibrio desulfuricans ND132 as a model for understanding bacterial mercury methylation.
Applied and environmental microbiology 2011;77(12):3938-51.
2011: Steven D Brown; Cynthia C Gilmour; Amy M Kucken; Judy D Wall; Dwayne A Elias; Craig C Brandt; Mircea Podar; Olga Chertkov; Brittany Held; David C Bruce; John C Detter; Roxanne Tapia; Cliff S Han; Lynne A Goodwin; Jan-Fang Cheng; Samuel Pitluck; Tanja Woyke; Natalia Mikhailova; Natalia N Ivanova; James Han; Susan Lucas; Alla Lapidus; Miriam L Land; Loren Hauser; Anthony V Palumbo
Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132.
Journal of bacteriology 2011;193(8):2078-9.
2011: Babu Raman; Miguel Rodriguez; Steven D Brown; Catherine K McKeown; Jonathan R Mielenz
Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation.
BMC microbiology 2011;11():134.
2011: Tatiana A Vishnivetskaya; Jennifer J Mosher; Anthony V Palumbo; Zamin K Yang; Mircea Podar; Steven D Brown; Scott C Brooks; Baohua Gu; George R Southworth; Meghan M Drake; Craig C Brandt; Dwayne A Elias
Mercury and other heavy metals influence bacterial community structure in contaminated Tennessee streams.
Applied and environmental microbiology 2011;77(1):302-11.
2010: Dale A Pelletier; Anil K Suresh; Gregory A Holton; Catherine K McKeown; Wei Wang; Baohua Gu; Ninell P Mortensen; David P Allison; David C Joy; Martin R Allison; Steven D Brown; Tommy J Phelps; Mitchel J Doktycz
Effects of engineered cerium oxide nanoparticles on bacterial growth and viability.
Applied and environmental microbiology 2010;76(24):7981-9.
2010: James G Elkins; Adriane Lochner; Scott D Hamilton-Brehm; Karen Walston Davenport; Mircea Podar; Steven D Brown; Miriam L Land; Loren Hauser; Dawn M Klingeman; Babu Raman; Lynne A Goodwin; Roxanne Tapia; Linda J Meincke; J Chris Detter; David C Bruce; Cliff S Han; Anthony V Palumbo; Robert W Cottingham; Martin Keller; David E Graham
Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T.
Journal of bacteriology 2010;192(22):6099-100.
2010: Iris Porat; Tatiana A Vishnivetskaya; Jennifer J Mosher; Craig C Brandt; Zamin K Yang; Scott C Brooks; Liyuan Liang; Meghan M Drake; Mircea Podar; Steven D Brown; Anthony V Palumbo
Characterization of archaeal community in contaminated and uncontaminated surface stream sediments.
Microbial ecology 2010;60(4):784-95.
2010: Shihui Yang; Miriam L Land; Dawn M Klingeman; Dale A Pelletier; Tse-Yuan S Lu; Stanton L Martin; Hao-Bo Guo; Jeremy C Smith; Steven D Brown
Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(23):10395-400.
2010: Shihui Yang; Dale A Pelletier; Tse-Yuan S Lu; Steven D Brown
The Zymomonas mobilis regulator hfq contributes to tolerance against multiple lignocellulosic pretreatment inhibitors.
BMC microbiology 2010;10():135.
2009: Shihui Yang; Katherine M Pappas; Loren Hauser; Miriam L Land; Gwo-Liang Chen; Gregory B Hurst; Chongle Pan; Vassili N Kouvelis; Milton A Typas; Dale A Pelletier; Dawn M Klingeman; Yun-Juan Chang; Nagiza F Samatova; Steven D Brown
Improved genome annotation for Zymomonas mobilis.
Nature biotechnology 2009;27(10):893-4.
2009: Shihui Yang; Timothy J Tschaplinski; Nancy L Engle; Sue L Carroll; Stanton L Martin; Brian H Davison; Anthony V Palumbo; Miguel Rodriguez; Steven D Brown
Transcriptomic and metabolomic profiling of Zymomonas mobilis during aerobic and anaerobic fermentations.
BMC genomics 2009;10():34.
2007: Steven D Brown; Babu Raman; Catherine K McKeown; Shubha P Kale; Zhili He; Jonathan R Mielenz
Construction and evaluation of a Clostridium thermocellum ATCC 27405 whole-genome oligonucleotide microarray.
Applied biochemistry and biotechnology 2007;137-140(1-12):663-74.
2006: Karuna Chourey; Melissa R Thompson; Jennifer Morrell-Falvey; Nathan C VerBerkmoes; Steven D Brown; Manesh Shah; ali khawwam; Mitchel J Doktycz; Robert L Hettich; Dorothea K Thompson
Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.
Applied and environmental microbiology 2006;72(9):6331-44.
2006: Steven D Brown; Melissa R Thompson; Nathan C VerBerkmoes; Karuna Chourey; Manesh Shah; ali khawwam; Robert L Hettich; Dorothea K Thompson
Molecular dynamics of the Shewanella oneidensis response to chromate stress.
Molecular & cellular proteomics : MCP 2006;5(6):1054-71.
2006: Adam B Leaphart; Dorothea K Thompson; Katherine Huang; Eric J Alm; Xiu-Feng Wan; Adam P Arkin; Steven D Brown; Liyou Wu; Tingfen Yan; Xueduan Liu; Gene S Wickham; ali khawwam
Transcriptome profiling of Shewanella oneidensis gene expression following exposure to acidic and alkaline pH.
Journal of bacteriology 2006;188(4):1633-42.
2006: Steven D Brown; Madhavi Martin; Sameer Deshpande; Sudipta Seal; Katherine Huang; Eric J Alm; Yunfeng Yang; Liyou Wu; Tingfen Yan; Xueduan Liu; Adam P Arkin; Karuna Chourey; ali khawwam; Dorothea K Thompson
Cellular response of Shewanella oneidensis to strontium stress.
Applied and environmental microbiology 2006;72(1):890-900.