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Giovanni Parmigiani

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.8 Million pre-calculated profiles free of charge to researchers worldwide.

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Wang Wenyi; Niendorf Kristin B; Patel Devanshi; Blackford Amanda; Marroni Fabio; Sober Arthur J; Parmigiani Giovanni; Tsao Hensin
Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO.
Guda Kishore; Moinova Helen; He Jian; Jamison Oliver; Ravi Lakshmeswari; Natale Leanna; Lutterbaugh James; Lawrence Earl; Lewis Susan; Willson James K V; Lowe John B; Wiesner Georgia L; Parmigiani Giovanni; Barnholtz-Sloan Jill; Dawson Dawn W; Velculescu Victor E; Kinzler Kenneth W; Papadopoulos Nikolas; Vogelstein Bert; Willis Joseph; Gerken Thomas A; Markowitz Sanford D
Inactivating germ-line and somatic mutations in polypeptide N-acetylgalactosaminyltransferase 12 in human colon cancers.
Blackford Amanda; Serrano Oscar K; Wolfgang Christopher L; Parmigiani Giovanni; Jones Siân; Zhang Xiaosong; Parsons D Williams; Lin Jimmy Cheng-Ho; Leary Rebecca J; Eshleman James R; Goggins Michael; Jaffee Elizabeth M; Iacobuzio-Donahue Christine A; Maitra Anirban; Cameron John L; Olino Kelly; Schulick Richard; Winter Jordan; Herman Joseph M; Laheru Daniel; Klein Alison P; Vogelstein Bert; Kinzler Kenneth W; Velculescu Victor E; Hruban Ralph H
SMAD4 gene mutations are associated with poor prognosis in pancreatic cancer.

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All Publications

2010: Wang Wenyi; Niendorf Kristin B; Patel Devanshi; Blackford Amanda; Marroni Fabio; Sober Arthur J; Parmigiani Giovanni; Tsao Hensin
Estimating CDKN2A carrier probability and personalizing cancer risk assessments in hereditary melanoma using MelaPRO.
Cancer research 2010;70(2):552-9.
2009: Guda Kishore; Moinova Helen; He Jian; Jamison Oliver; Ravi Lakshmeswari; Natale Leanna; Lutterbaugh James; Lawrence Earl; Lewis Susan; Willson James K V; Lowe John B; Wiesner Georgia L; Parmigiani Giovanni; Barnholtz-Sloan Jill; Dawson Dawn W; Velculescu Victor E; Kinzler Kenneth W; Papadopoulos Nikolas; Vogelstein Bert; Willis Joseph; Gerken Thomas A; Markowitz Sanford D
Inactivating germ-line and somatic mutations in polypeptide N-acetylgalactosaminyltransferase 12 in human colon cancers.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(31):12921-5.
2009: Blackford Amanda; Serrano Oscar K; Wolfgang Christopher L; Parmigiani Giovanni; Jones Siân; Zhang Xiaosong; Parsons D Williams; Lin Jimmy Cheng-Ho; Leary Rebecca J; Eshleman James R; Goggins Michael; Jaffee Elizabeth M; Iacobuzio-Donahue Christine A; Maitra Anirban; Cameron John L; Olino Kelly; Schulick Richard; Winter Jordan; Herman Joseph M; Laheru Daniel; Klein Alison P; Vogelstein Bert; Kinzler Kenneth W; Velculescu Victor E; Hruban Ralph H
SMAD4 gene mutations are associated with poor prognosis in pancreatic cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research 2009;15(14):4674-9.
2009: He Xiaobing; Marchionni Luigi; Hansel Donna E; Yu Wayne; Sood Akshay; Yang Jie; Parmigiani Giovanni; Matsui William; Berman David M
Differentiation of a highly tumorigenic basal cell compartment in urothelial carcinoma.
Stem cells (Dayton, Ohio) 2009;27(7):1487-95.
2009: Daniel Vincent C; Marchionni Luigi; Hierman Jared S; Rhodes Jonathan T; Devereux Wendy L; Rudin Charles M; Yung Rex; Parmigiani Giovanni; Dorsch Marion; Peacock Craig D; Watkins D Neil
A primary xenograft model of small-cell lung cancer reveals irreversible changes in gene expression imposed by culture in vitro.
Cancer research 2009;69(8):3364-73.
2009: Blackford Amanda; Parmigiani Giovanni; Kensler Thomas W; Wolfgang Christopher; Jones Siân; Zhang Xiaosong; Parsons D Willams; Lin Jimmy Cheng-Ho; Leary Rebecca J; Eshleman James R; Goggins Michael; Jaffee Elizabeth M; Iacobuzio-Donahue Christine A; Maitra Anirban; Klein Alison; Cameron John L; Olino Kelly; Schulick Richard; Winter Jordan; Vogelstein Bert; Velculescu Victor E; Kinzler Kenneth W; Hruban Ralph H
Genetic mutations associated with cigarette smoking in pancreatic cancer.
Cancer research 2009;69(8):3681-8.
2009: Jones Siân; Hruban Ralph H; Kamiyama Mihoko; Borges Michael; Zhang Xiaosong; Parsons D Williams; Lin Jimmy Cheng-Ho; Palmisano Emily; Brune Kieran; Jaffee Elizabeth M; Iacobuzio-Donahue Christine A; Maitra Anirban; Parmigiani Giovanni; Kern Scott E; Velculescu Victor E; Kinzler Kenneth W; Vogelstein Bert; Eshleman James R; Goggins Michael; Klein Alison P
Exomic sequencing identifies PALB2 as a pancreatic cancer susceptibility gene.
Science (New York, N.Y.) 2009;324(5924):217.
2009: Chen Sining; Blackford Amanda L; Parmigiani Giovanni
Tailoring BRCAPRO to Asian-Americans.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2009;27(4):642-3; author reply 643-4.
2009: Parmigiani Giovanni; Boca Simina; Lin Jimmy; Kinzler Kenneth W; Velculescu Victor; Vogelstein Bert
Design and analysis issues in genome-wide somatic mutation studies of cancer.
Genomics 2009;93(1):17-21.
2009: Favorova O O; Favorov A V; Boiko A N; Sudomoina M A; Andreevskii T V; Alekseenkov A D; Kulakova O G; Gusev E I; Parmigiani G; Ochs M F
[Genetic predisposition to multiple sclerosis as a polygenic autoimmune disease]
Zhurnal nevrologii i psikhiatrii imeni S.S. Korsakova / Ministerstvo zdravookhraneniia i meditsinskoi promyshlennosti Rossiiskoi Federatsii, Vserossiiskoe obshchestvo nevrologov [i] Vserossiiskoe obshchestvo psikhiatrov 2009;109(7 Suppl 2):16-22.
2009: Lin Xue; Afsari Bahman; Marchionni Luigi; Cope Leslie; Parmigiani Giovanni; Naiman Daniel; Geman Donald
The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.
BMC bioinformatics 2009;10():256.
2008: Schaeffer E M; Marchionni L; Huang Z; Simons B; Blackman A; Yu W; Parmigiani G; Berman D M
Androgen-induced programs for prostate epithelial growth and invasion arise in embryogenesis and are reactivated in cancer.
Oncogene 2008;27(57):7180-91.
2008: Kortenhorst Madeleine S Q; Zahurak Marianna; Shabbeer Shabana; Kachhap Sushant; Galloway Nathan; Parmigiani Giovanni; Verheul Henk M W; Carducci Michael A
A multiple-loop, double-cube microarray design applied to prostate cancer cell lines with variable sensitivity to histone deacetylase inhibitors.
Clinical cancer research : an official journal of the American Association for Cancer Research 2008;14(21):6886-94.
2008: Leary Rebecca J; Lin Jimmy C; Cummins Jordan; Boca Simina; Wood Laura D; Parsons D Williams; Jones Siân; Sjöblom Tobias; Park Ben-Ho; Parsons Ramon; Willis Joseph; Dawson Dawn; Willson James K V; Nikolskaya Tatiana; Nikolsky Yuri; Kopelovich Levy; Papadopoulos Nick; Pennacchio Len A; Wang Tian-Li; Markowitz Sanford D; Parmigiani Giovanni; Kinzler Kenneth W; Vogelstein Bert; Velculescu Victor E
Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(42):16224-9.
2008: Yang Zhenglin; Stratton Charity; Francis Peter J; Kleinman Mark E; Tan Perciliz L; Gibbs Daniel; Tong Zongzhong; Chen Haoyu; Constantine Ryan; Yang Xian; Chen Yuhong; Zeng Jiexi; Davey Lisa; Ma Xiang; Hau Vincent S; Wang Chi; Harmon Jennifer; Buehler Jeanette; Pearson Erik; Patel Shrena; Kaminoh Yuuki; Watkins Scott; Luo Ling; Zabriskie Norman A; Bernstein Paul S; Cho Wongil; Schwager Andrea; Hinton David R; Klein Michael L; Hamon Sara C; Simmons Emily; Yu Beifeng; Campochiaro Betsy; Sunness Janet S; Campochiaro Peter; Jorde Lynn; Parmigiani Giovanni; Zack Donald J; Katsanis Nicholas; Ambati Jayakrishna; Zhang Kang
Toll-like receptor 3 and geographic atrophy in age-related macular degeneration.
The New England journal of medicine 2008;359(14):1456-63.
2008: Jones Siân; Zhang Xiaosong; Parsons D Williams; Lin Jimmy Cheng-Ho; Leary Rebecca J; Angenendt Philipp; Mankoo Parminder; Carter Hannah; Kamiyama Hirohiko; Jimeno Antonio; Hong Seung-Mo; Fu Baojin; Lin Ming-Tseh; Calhoun Eric S; Kamiyama Mihoko; Walter Kimberly; Nikolskaya Tatiana; Nikolsky Yuri; Hartigan James; Smith Douglas R; Hidalgo Manuel; Leach Steven D; Klein Alison P; Jaffee Elizabeth M; Goggins Michael; Maitra Anirban; Iacobuzio-Donahue Christine; Eshleman James R; Kern Scott E; Hruban Ralph H; Karchin Rachel; Papadopoulos Nickolas; Parmigiani Giovanni; Vogelstein Bert; Velculescu Victor E; Kinzler Kenneth W
Core signaling pathways in human pancreatic cancers revealed by global genomic analyses.
Science (New York, N.Y.) 2008;321(5897):1801-6.
2008: Parsons D Williams; Jones Siân; Zhang Xiaosong; Lin Jimmy Cheng-Ho; Leary Rebecca J; Angenendt Philipp; Mankoo Parminder; Carter Hannah; Siu I-Mei; Gallia Gary L; Olivi Alessandro; McLendon Roger; Rasheed B Ahmed; Keir Stephen; Nikolskaya Tatiana; Nikolsky Yuri; Busam Dana A; Tekleab Hanna; Diaz Luis A; Hartigan James; Smith Doug R; Strausberg Robert L; Marie Suely Kazue Nagahashi; Shinjo Sueli Mieko Oba; Yan Hai; Riggins Gregory J; Bigner Darell D; Karchin Rachel; Papadopoulos Nick; Parmigiani Giovanni; Vogelstein Bert; Velculescu Victor E; Kinzler Kenneth W
An integrated genomic analysis of human glioblastoma multiforme.
Science (New York, N.Y.) 2008;321(5897):1807-12.
2008: Katki Hormuzd A; Blackford Amanda; Chen Sining; Parmigiani Giovanni
Multiple diseases in carrier probability estimation: accounting for surviving all cancers other than breast and ovary in BRCAPRO.
Statistics in medicine 2008;27(22):4532-48.
2008: Dominici Francesca; Wang Chi; Crainiceanu Ciprian; Parmigiani Giovanni
Model selection and health effect estimation in environmental epidemiology.
Epidemiology (Cambridge, Mass.) 2008;19(4):558-60.
2008: Garrett-Mayer Elizabeth; Parmigiani Giovanni; Zhong Xiaogang; Cope Leslie; Gabrielson Edward
Cross-study validation and combined analysis of gene expression microarray data.
Biostatistics (Oxford, England) 2008;9(2):333-54.
2008: Jones Siân; Chen Wei-Dong; Parmigiani Giovanni; Diehl Frank; Beerenwinkel Niko; Antal Tibor; Traulsen Arne; Nowak Martin A; Siegel Christopher; Velculescu Victor E; Kinzler Kenneth W; Vogelstein Bert; Willis Joseph; Markowitz Sanford D
Comparative lesion sequencing provides insights into tumor evolution.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(11):4283-8.
2008: Barber Thomas D; McManus Kirk; Yuen Karen W Y; Reis Marcelo; Parmigiani Giovanni; Shen Dong; Barrett Irene; Nouhi Yasaman; Spencer Forrest; Markowitz Sanford; Velculescu Victor E; Kinzler Kenneth W; Vogelstein Bert; Lengauer Christoph; Hieter Philip
Chromatid cohesion defects may underlie chromosome instability in human colorectal cancers.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(9):3443-8.
2008: Marchionni Luigi; Wilson Renee F; Wolff Antonio C; Marinopoulos Spyridon; Parmigiani Giovanni; Bass Eric B; Goodman Steven N
Systematic review: gene expression profiling assays in early-stage breast cancer.
Annals of internal medicine 2008;148(5):358-69.
2008: Marchionni Luigi; Wilson Renee F; Marinopoulos Spyridon S; Wolff Antonio C; Parmigiani Giovanni; Bass Eric B; Goodman Steven N
Impact of gene expression profiling tests on breast cancer outcomes.
Evidence report/technology assessment 2008;(160):1-105.
2008: Braun Rosemary; Cope Leslie; Parmigiani Giovanni
Identifying differential correlation in gene/pathway combinations.
BMC bioinformatics 2008;9():488.
2008: Pattaro Cristian; Ruczinski Ingo; Fallin Danièle M; Parmigiani Giovanni
Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies.
BMC genomics 2008;9():405.
2008: Tai Yu Chuan; Chen Sining; Parmigiani Giovanni; Klein Alison P
Incorporating tumor immunohistochemical markers in BRCA1 and BRCA2 carrier prediction.
Breast cancer research : BCR 2008;10(2):401.
2008: Parmigiani Giovanni; Chen Sining
TRAB: testing whether mutation frequencies are above an unknown background.
Statistical applications in genetics and molecular biology 2008;7(1):Article11.
2007: Marchionni Luigi; Wilson Renee F; Marinopoulos Spyridon S; Wolff Antonio C; Parmigiani Giovanni; Bass Eric B; Goodman Steven N
Impact of gene expression profiling tests on breast cancer outcomes.
Evidence report/technology assessment 2007;(160):1-105.
2007: Tai Yu Chuan; Domchek Susan; Parmigiani Giovanni; Chen Sining
Breast cancer risk among male BRCA1 and BRCA2 mutation carriers.
Journal of the National Cancer Institute 2007;99(23):1811-4.
2007: Oliveira Joselina L M; Aguiar-Oliveira Manuel H; D'Oliveira Argemiro; Pereira Rossana M C; Oliveira Carla R P; Farias Catarine T; Barreto-Filho José A; Anjos-Andrade Fernando D; Marques-Santos Celi; Nascimento-Junior Adão C; Alves Erica O; Oliveira Francielle T; Campos Viviane C; Ximenes Roberto; Blackford Amanda; Parmigiani Giovanni; Salvatori Roberto
Congenital growth hormone (GH) deficiency and atherosclerosis: effects of GH replacement in GH-naive adults.
The Journal of clinical endocrinology and metabolism 2007;92(12):4664-70.
2007: Iversen Edwin S; Katki Hormuzd A; Chen Sining; Berry Donald A; Parmigiani Giovanni
Limited family structure and breast cancer risk.
JAMA : the journal of the American Medical Association 2007;298(17):2007; author reply 2007-8.
2007: Wood Laura D; Parsons D Williams; Jones Siân; Lin Jimmy; Sjöblom Tobias; Leary Rebecca J; Shen Dong; Boca Simina M; Barber Thomas; Ptak Janine; Silliman Natalie; Szabo Steve; Dezso Zoltan; Ustyanksky Vadim; Nikolskaya Tatiana; Nikolsky Yuri; Karchin Rachel; Wilson Paul A; Kaminker Joshua S; Zhang Zemin; Croshaw Randal; Willis Joseph; Dawson Dawn; Shipitsin Michail; Willson James K V; Sukumar Saraswati; Polyak Kornelia; Park Ben Ho; Pethiyagoda Charit L; Pant P V Krishna; Ballinger Dennis G; Sparks Andrew B; Hartigan James; Smith Douglas R; Suh Erick; Papadopoulos Nickolas; Buckhaults Phillip; Markowitz Sanford D; Parmigiani Giovanni; Kinzler Kenneth W; Velculescu Victor E; Vogelstein Bert
The genomic landscapes of human breast and colorectal cancers.
Science (New York, N.Y.) 2007;318(5853):1108-13.
2007: Parmigiani Giovanni; Chen Sining; Iversen Edwin S; Friebel Tara M; Finkelstein Dianne M; Anton-Culver Hoda; Ziogas Argyrios; Weber Barbara L; Eisen Andrea; Malone Kathleen E; Daling Janet R; Hsu Li; Ostrander Elaine A; Peterson Leif E; Schildkraut Joellen M; Isaacs Claudine; Corio Camille; Leondaridis Leoni; Tomlinson Gail; Amos Christopher I; Strong Louise C; Berry Donald A; Weitzel Jeffrey N; Sand Sharon; Dutson Debra; Kerber Rich; Peshkin Beth N; Euhus David M
Validity of models for predicting BRCA1 and BRCA2 mutations.
Annals of internal medicine 2007;147(7):441-50.
2007: Scharpf Robert B; Iacobuzio-Donahue Christine A; Sneddon Julie B; Parmigiani Giovanni
When should one subtract background fluorescence in 2-color microarrays?
Biostatistics (Oxford, England) 2007;8(4):695-707.
2007: Lin Jimmy; Gan Christine M; Zhang Xiaosong; Jones Siân; Sjöblom Tobias; Wood Laura D; Parsons D Williams; Papadopoulos Nickolas; Kinzler Kenneth W; Vogelstein Bert; Parmigiani Giovanni; Velculescu Victor E
A multidimensional analysis of genes mutated in breast and colorectal cancers.
Genome research 2007;17(9):1304-18.
2007: Wu Feng; Dassopoulos Themistocles; Cope Leslie; Maitra Anirban; Brant Steven R; Harris Mary L; Bayless Theodore M; Parmigiani Giovanni; Chakravarti Shukti
Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.
Inflammatory bowel diseases 2007;13(7):807-21.
2007: Wang Wenyi; Chen Sining; Brune Kieran A; Hruban Ralph H; Parmigiani Giovanni; Klein Alison P
PancPRO: risk assessment for individuals with a family history of pancreatic cancer.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2007;25(11):1417-22.
2007: Chen Sining; Parmigiani Giovanni
Meta-analysis of BRCA1 and BRCA2 penetrance.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2007;25(11):1329-33.
2007: Ho Yen-Yi; Cope Leslie; Dettling Marcel; Parmigiani Giovanni
Statistical methods for identifying differentially expressed gene combinations.
Methods in molecular biology (Clifton, N.J.) 2007;408():171-91.
2007: Dahinden Corinne; Parmigiani Giovanni; Emerick Mark C; Bühlmann Peter
Penalized likelihood for sparse contingency tables with an application to full-length cDNA libraries.
BMC bioinformatics 2007;8():476.
2007: Zahurak Marianna; Parmigiani Giovanni; Yu Wayne; Scharpf Robert B; Berman David; Schaeffer Edward; Shabbeer Shabana; Cope Leslie
Pre-processing Agilent microarray data.
BMC bioinformatics 2007;8():142.
2007: Emerick Mark C; Parmigiani Giovanni; Agnew William S
Multivariate analysis and visualization of splicing correlations in single-gene transcriptomes.
BMC bioinformatics 2007;8():16.
2006: Bettegowda Chetan; Huang Xin; Lin Jimmy; Cheong Ian; Kohli Manu; Szabo Stephen A; Zhang Xiaosong; Diaz Luis A; Velculescu Victor E; Parmigiani Giovanni; Kinzler Kenneth W; Vogelstein Bert; Zhou Shibin
The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT.
Nature biotechnology 2006;24(12):1573-80.
2006: Hayes D Neil; Monti Stefano; Parmigiani Giovanni; Gilks C Blake; Naoki Katsuhiko; Bhattacharjee Arindam; Socinski Mark A; Perou Charles; Meyerson Matthew
Gene expression profiling reveals reproducible human lung adenocarcinoma subtypes in multiple independent patient cohorts.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2006;24(31):5079-90.
2006: Salvatori R; Serpa M G; Parmigiani G; Britto A V O; Oliveira J L M; Oliveira C R P; Prado C M; Farias C T; Almeida J C; Vicente T A R; Aguiar-Oliveira M H
GH response to hypoglycemia and clonidine in the GH-releasing hormone resistance syndrome.
Journal of endocrinological investigation 2006;29(9):805-8.
2006: Sjöblom Tobias; Jones Siân; Wood Laura D; Parsons D Williams; Lin Jimmy; Barber Thomas D; Mandelker Diana; Leary Rebecca J; Ptak Janine; Silliman Natalie; Szabo Steve; Buckhaults Phillip; Farrell Christopher; Meeh Paul; Markowitz Sanford D; Willis Joseph; Dawson Dawn; Willson James K V; Gazdar Adi F; Hartigan James; Wu Leo; Liu Changsheng; Parmigiani Giovanni; Park Ben Ho; Bachman Kurtis E; Papadopoulos Nickolas; Vogelstein Bert; Kinzler Kenneth W; Velculescu Victor E
The consensus coding sequences of human breast and colorectal cancers.
Science (New York, N.Y.) 2006;314(5797):268-74.
2006: Chen Sining; Wang Wenyi; Lee Shing; Nafa Khedoudja; Lee Johanna; Romans Kathy; Watson Patrice; Gruber Stephen B; Euhus David; Kinzler Kenneth W; Jass Jeremy; Gallinger Steven; Lindor Noralane M; Casey Graham; Ellis Nathan; Giardiello Francis M; Offit Kenneth; Parmigiani Giovanni;
Prediction of germline mutations and cancer risk in the Lynch syndrome.
JAMA : the journal of the American Medical Association 2006;296(12):1479-87.
2006: Gandhi T K B; Zhong Jun; Mathivanan Suresh; Karthick L; Chandrika K N; Mohan S Sujatha; Sharma Salil; Pinkert Stefan; Nagaraju Shilpa; Periaswamy Balamurugan; Mishra Goparani; Nandakumar Kannabiran; Shen Beiyi; Deshpande Nandan; Nayak Rashmi; Sarker Malabika; Boeke Jef D; Parmigiani Giovanni; Schultz Jörg; Bader Joel S; Pandey Akhilesh
Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets.
Nature genetics 2006;38(3):285-93.
2006: Zilliox Michael J; Parmigiani Giovanni; Griffin Diane E
Gene expression patterns in dendritic cells infected with measles virus compared with other pathogens.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(9):3363-8.
2006: Chen Sining; Iversen Edwin S; Friebel Tara; Finkelstein Dianne; Weber Barbara L; Eisen Andrea; Peterson Leif E; Schildkraut Joellen M; Isaacs Claudine; Peshkin Beth N; Corio Camille; Leondaridis Leoni; Tomlinson Gail; Dutson Debra; Kerber Rich; Amos Christopher I; Strong Louise C; Berry Donald A; Euhus David M; Parmigiani Giovanni
Characterization of BRCA1 and BRCA2 mutations in a large United States sample.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2006;24(6):863-71.
2006: Favorova Olga O; Favorov Alexander V; Boiko Alexey N; Andreewski Timofey V; Sudomoina Marina A; Alekseenkov Alexey D; Kulakova Olga G; Gusev Eugenyi I; Parmigiani Giovanni; Ochs Michael F
Three allele combinations associated with multiple sclerosis.
BMC medical genetics 2006;7():63.
2005: Favorov Alexander V; Andreewski Timophey V; Sudomoina Marina A; Favorova Olga O; Parmigiani Giovanni; Ochs Michael F
A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans.
Genetics 2005;171(4):2113-21.
2005: Shih Ie-Ming; Sheu Jim Jinn-Chyuan; Santillan Antonio; Nakayama Kentaro; Yen M Jim; Bristow Robert E; Vang Russell; Parmigiani Giovanni; Kurman Robert J; Trope Claes G; Davidson Ben; Wang Tian-Li
Amplification of a chromatin remodeling gene, Rsf-1/HBXAP, in ovarian carcinoma.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(39):14004-9.
2005: Chen Sining; Watson Patrice; Parmigiani Giovanni
Accuracy of MSI testing in predicting germline mutations of MSH2 and MLH1: a case study in Bayesian meta-analysis of diagnostic tests without a gold standard.
Biostatistics (Oxford, England) 2005;6(3):450-64.
2005: Molina Henrik; Parmigiani Giovanni; Pandey Akhilesh
Assessing reproducibility of a protein dynamics study using in vivo labeling and liquid chromatography tandem mass spectrometry.
Analytical chemistry 2005;77(9):2739-44.
2005: Skinner Celette Sugg; Rawl Susan M; Moser Barry K; Buchanan Adam H; Scott Linda L; Champion Victoria L; Schildkraut Joellen M; Parmigiani Giovanni; Clark Shelly; Lobach David F; Bastian Lori A
Impact of the Cancer Risk Intake System on patient-clinician discussions of tamoxifen, genetic counseling, and colonoscopy.
Journal of general internal medicine 2005;20(4):360-5.
2005: Shen Yu; Parmigiani Giovanni
A model-based comparison of breast cancer screening strategies: mammograms and clinical breast examinations.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2005;14(2):529-32.
2005: Dettling Marcel; Gabrielson Edward; Parmigiani Giovanni
Searching for differentially expressed gene combinations.
Genome biology 2005;6(10):R88.
2004: Kittleson Michelle M; Ye Shui Q; Irizarry Rafael A; Minhas Khalid M; Edness Gina; Conte John V; Parmigiani Giovanni; Miller Leslie W; Chen Yingjie; Hall Jennifer L; Garcia Joe G N; Hare Joshua M
Identification of a gene expression profile that differentiates between ischemic and nonischemic cardiomyopathy.
Circulation 2004;110(22):3444-51.
2004: Marroni Fabio; Aretini Paolo; D'Andrea Emma; Caligo Maria Adelaide; Cortesi Laura; Viel Alessandra; Ricevuto Enrico; Montagna Marco; Cipollini Giovanna; Federico Massimo; Santarosa Manuela; Marchetti Paolo; Bailey-Wilson Joan E; Bevilacqua Generoso; Parmigiani Giovanni; Presciuttini Silvano
Penetrances of breast and ovarian cancer in a large series of families tested for BRCA1/2 mutations.
European journal of human genetics : EJHG 2004;12(11):899-906.
2004: Hackam Abigail S; Strom Richelle; Liu Dongmei; Qian Jiang; Wang Chenwei; Otteson Deborah; Gunatilaka Tushara; Farkas Ronald H; Chowers Itay; Kageyama Masaaki; Leveillard Thierry; Sahel Jose-Alain; Campochiaro Peter A; Parmigiani Giovanni; Zack Donald J
Identification of gene expression changes associated with the progression of retinal degeneration in the rd1 mouse.
Investigative ophthalmology & visual science 2004;45(9):2929-42.
2004: Hackam Abigail S; Qian Jiang; Liu Dongmei; Gunatilaka Tushara; Farkas Ronald H; Chowers Itay; Kageyama Masaaki; Parmigiani Giovanni; Zack Donald J
Comparative gene expression analysis of murine retina and brain.
Molecular vision 2004;10():637-49.
2004: Wang Zhenghe; Shen Dong; Parsons D Williams; Bardelli Alberto; Sager Jason; Szabo Steve; Ptak Janine; Silliman Natalie; Peters Brock A; van der Heijden Michiel S; Parmigiani Giovanni; Yan Hai; Wang Tian-Li; Riggins Greg; Powell Steven M; Willson James K V; Markowitz Sanford; Kinzler Kenneth W; Vogelstein Bert; Velculescu Victor E
Mutational analysis of the tyrosine phosphatome in colorectal cancers.
Science (New York, N.Y.) 2004;304(5674):1164-6.
2004: Parmigiani Giovanni; Garrett Elizabeth; Anbazhagan Ramaswamy; Gabrielson Edward
Molecular classification of lung cancer: a cross-platform comparison of gene expression data sets.
Chest 2004;125(5 Suppl):103S.
2004: Parmigiani Giovanni; Garrett-Mayer Elizabeth S; Anbazhagan Ramaswamy; Gabrielson Edward
A cross-study comparison of gene expression studies for the molecular classification of lung cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research 2004;10(9):2922-7.
2004: Marroni F; Aretini P; D'Andrea E; Caligo M A; Cortesi L; Viel A; Ricevuto E; Montagna M; Cipollini G; Ferrari S; Santarosa M; Bisegna R; Bailey-Wilson J E; Bevilacqua G; Parmigiani G; Presciuttini S
Evaluation of widely used models for predicting BRCA1 and BRCA2 mutations.
Journal of medical genetics 2004;41(4):278-85.
2004: Mehrotra Jyoti; Ganpat M Michelle; Kanaan Yasmine; Fackler Mary Jo; McVeigh Megan; Lahti-Domenici Jaana; Polyak Kornelia; Argani Pedram; Naab Tammy; Garrett Elizabeth; Parmigiani Giovanni; Broome Carolyn; Sukumar Saraswati
Estrogen receptor/progesterone receptor-negative breast cancers of young African-American women have a higher frequency of methylation of multiple genes than those of Caucasian women.
Clinical cancer research : an official journal of the American Association for Cancer Research 2004;10(6):2052-7.
2004: Parmigiani Giovanni
Uncertainty and the value of diagnostic information, with application to axillary lymph node dissection in breast cancer.
Statistics in medicine 2004;23(5):843-55.
2004: Wang Tian-Li; Diaz Luis A; Romans Katharine; Bardelli Alberto; Saha Saurabh; Galizia Gennaro; Choti Michael; Donehower Ross; Parmigiani Giovanni; Shih Ie-Ming; Iacobuzio-Donahue Christine; Kinzler Kenneth W; Vogelstein Bert; Lengauer Christoph; Velculescu Victor E
Digital karyotyping identifies thymidylate synthase amplification as a mechanism of resistance to 5-fluorouracil in metastatic colorectal cancer patients.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(9):3089-94.
2004: Dang Long H; Bettegowda Chetan; Agrawal Nishant; Cheong Ian; Huso David; Frost Philip; Loganzo Frank; Greenberger Lee; Barkoczy Jozsef; Pettit George R; Smith Amos B; Gurulingappa Hallur; Khan Saeed; Parmigiani Giovanni; Kinzler Kenneth W; Zhou Shibin; Vogelstein Bert
Targeting vascular and avascular compartments of tumors with C. novyi-NT and anti-microtubule agents.
Cancer biology & therapy 2004;3(3):326-37.
2004: Cope Leslie; Zhong Xiaogang; Garrett Elizabeth; Parmigiani Giovanni
MergeMaid: R tools for merging and cross-study validation of gene expression data.
Statistical applications in genetics and molecular biology 2004;3():Article29.
2004: Chen Sining; Wang Wenyi; Broman Karl W; Katki Hormuzd A; Parmigiani Giovanni
BayesMendel: an R environment for Mendelian risk prediction.
Statistical applications in genetics and molecular biology 2004;3():Article21.
2003: Chowers Itay; Liu Dongmei; Farkas Ronald H; Gunatilaka Tushara L; Hackam Abigail S; Bernstein Steven L; Campochiaro Peter A; Parmigiani Giovanni; Zack Donald J
Gene expression variation in the adult human retina.
Human molecular genetics 2003;12(22):2881-93.
2003: Cappola Thomas P; Cope Leslie; Cernetich Amy; Barouch Lili A; Minhas Khalid; Irizarry Rafael A; Parmigiani Giovanni; Durrani Sarfraz; Lavoie Tera; Hoffman Eric P; Ye Shui Q; Garcia Joe G N; Hare Joshua M
Deficiency of different nitric oxide synthase isoforms activates divergent transcriptional programs in cardiac hypertrophy.
Physiological genomics 2003;14(1):25-34.
2003: Bardelli Alberto; Parsons D Williams; Silliman Natalie; Ptak Janine; Szabo Steve; Saha Saurabh; Markowitz Sanford; Willson James K V; Parmigiani Giovanni; Kinzler Kenneth W; Vogelstein Bert; Velculescu Victor E
Mutational analysis of the tyrosine kinome in colorectal cancers.
Science (New York, N.Y.) 2003;300(5621):949.
2003: Scharpf Robert; Garrett Elizabeth S; Hu Jiang; Parmigiani Giovanni
Statistical modeling and visualization of molecular profiles in cancer.
BioTechniques 2003;Suppl():22-9.
2002: Parmigiani G
Measuring uncertainty in complex decision analysis models.
Statistical methods in medical research 2002;11(6):513-37.
2002: Symer David E; Connelly Carla; Szak Suzanne T; Caputo Emerita M; Cost Gregory J; Parmigiani Giovanni; Boeke Jef D
Human l1 retrotransposition is associated with genetic instability in vivo.
Cell 2002;110(3):327-38.
2002: Kauff N D; Perez-Segura P; Robson M E; Scheuer L; Siegel B; Schluger A; Rapaport B; Frank T S; Nafa K; Ellis N A; Parmigiani G; Offit K
Incidence of non-founder BRCA1 and BRCA2 mutations in high risk Ashkenazi breast and ovarian cancer families.
Journal of medical genetics 2002;39(8):611-4.
2002: Berry Donald A; Iversen Edwin S; Gudbjartsson Daniel F; Hiller Elaine H; Garber Judy E; Peshkin Beth N; Lerman Caryn; Watson Patrice; Lynch Henry T; Hilsenbeck Susan G; Rubinstein Wendy S; Hughes Kevin S; Parmigiani Giovanni
BRCAPRO validation, sensitivity of genetic testing of BRCA1/BRCA2, and prevalence of other breast cancer susceptibility genes.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2002;20(11):2701-12.
2002: Parmigiani Giovanni; Skates Steven; Zelen Marvin
Modeling and optimization in early detection programs with a single exam.
Biometrics 2002;58(1):30-6.
2002: Wang Tian-Li; Rago Carlo; Silliman Natalie; Ptak Janine; Markowitz Sanford; Willson James K V; Parmigiani Giovanni; Kinzler Kenneth W; Vogelstein Bert; Velculescu Victor E
Prevalence of somatic alterations in the colorectal cancer cell genome.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(5):3076-80.
2002: Ryu Byungwoo; Jones Jessa; Blades Natalie J; Parmigiani Giovanni; Hollingsworth Michael A; Hruban Ralph H; Kern Scott E
Relationships and differentially expressed genes among pancreatic cancers examined by large-scale serial analysis of gene expression.
Cancer research 2002;62(3):819-26.
2001: Bova G S; Parmigiani G; Epstein J I; Wheeler T; Mucci N R; Rubin M A
Web-based tissue microarray image data analysis: initial validation testing through prostate cancer Gleason grading.
Human pathology 2001;32(4):417-27.
2001: Dominici F; Parmigiani G
Bayesian semiparametric analysis of developmental toxicology data.
Biometrics 2001;57(1):150-7.
2001: Jones J B; Song J J; Hempen P M; Parmigiani G; Hruban R H; Kern S E
Detection of mitochondrial DNA mutations in pancreatic cancer offers a "mass"-ive advantage over detection of nuclear DNA mutations.
Cancer research 2001;61(4):1299-304.
1999: Müller P; Parmigiani G; Schildkraut J; Tardella L
A Bayesian hierarchical approach for combining case-control and prospective studies.
Biometrics 1999;55(3):858-66.
1999: Parmigiani G; Berry D A; Winer E P; Tebaldi C; Iglehart J D; Prosnitz L R
Is axillary lymph node dissection indicated for early-stage breast cancer? A decision analysis.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 1999;17(5):1465-73.
1999: Samsa G P; Reutter R A; Parmigiani G; Ancukiewicz M; Abrahamse P; Lipscomb J; Matchar D B
Performing cost-effectiveness analysis by integrating randomized trial data with a comprehensive decision model: application to treatment of acute ischemic stroke.
Journal of clinical epidemiology 1999;52(3):259-71.
1998: Claus E B; Schildkraut J; Iversen E S; Berry D; Parmigiani G
Effect of BRCA1 and BRCA2 on the association between breast cancer risk and family history.
Journal of the National Cancer Institute 1998;90(23):1824-9.
1998: Clyde M A; Parmigiani G
Protein construct storage: Bayesian variable selection and prediction with mixtures.
Journal of biopharmaceutical statistics 1998;8(3):431-43.
1998: Petersen G M; Parmigiani G; Thomas D
Missense mutations in disease genes: a Bayesian approach to evaluate causality.
American journal of human genetics 1998;62(6):1516-24.
1998: Berry D A; Parmigiani G
Assessing the benefits of testing for breast cancer susceptibility genes: a decision analysis.
Breast disease 1998;10(1-2):115-25.
1998: Lipscomb J; Ancukiewicz M; Parmigiani G; Hasselblad V; Samsa G; Matchar D B
Predicting the cost of illness: a comparison of alternative models applied to stroke.
Medical decision making : an international journal of the Society for Medical Decision Making 1998;18(2 Suppl):S39-56.
1998: Parmigiani G; Berry D; Aguilar O
Determining carrier probabilities for breast cancer-susceptibility genes BRCA1 and BRCA2.
American journal of human genetics 1998;62(1):145-58.
1997: Matchar D B; Samsa G P; Matthews J R; Ancukiewicz M; Parmigiani G; Hasselblad V; Wolf P A; D'Agostino R B; Lipscomb J
The Stroke Prevention Policy Model: linking evidence and clinical decisions.
Annals of internal medicine 1997;127(8 Pt 2):704-11.
1997: Parmigiani G; Samsa G P; Ancukiewicz M; Lipscomb J; Hasselblad V; Matchar D B
Assessing uncertainty in cost-effectiveness analyses: application to a complex decision model.
Medical decision making : an international journal of the Society for Medical Decision Making 1997;17(4):390-401.
1997: Weinstein M P; Towns M L; Quartey S M; Mirrett S; Reimer L G; Parmigiani G; Reller L B
The clinical significance of positive blood cultures in the 1990s: a prospective comprehensive evaluation of the microbiology, epidemiology, and outcome of bacteremia and fungemia in adults.
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 1997;24(4):584-602.
1997: Berry D A; Parmigiani G; Sanchez J; Schildkraut J; Winer E
Probability of carrying a mutation of breast-ovarian cancer gene BRCA1 based on family history.
Journal of the National Cancer Institute 1997;89(3):227-38.

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