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Al Burlingame

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Chalkley Robert J; Thalhammer Agnes; Schoepfer Ralf; Burlingame A L
Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides.
Chalkley Robert J; Baker Peter R; Medzihradszky Katalin F; Lynn Aenoch J; Burlingame A L
In-depth analysis of tandem mass spectrometry data from disparate instrument types.
Hirsch Jan; Niemann Claus U; Hansen Kirk C; Choi SooJinNa; Su Xiao; Frank James A; Fang Xiaohui; Hirose Ryutaro; Theodore Pierre; Sapru Anil; Burlingame Alma L; Matthay Michael A
Alterations in the proteome of pulmonary alveolar type II cells in the rat after hepatic ischemia-reperfusion.

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All Publications

2009: Chalkley Robert J; Thalhammer Agnes; Schoepfer Ralf; Burlingame A L
Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(22):8894-9.
2008: Chalkley Robert J; Baker Peter R; Medzihradszky Katalin F; Lynn Aenoch J; Burlingame A L
In-depth analysis of tandem mass spectrometry data from disparate instrument types.
Molecular & cellular proteomics : MCP 2008;7(12):2386-98.
2008: Hirsch Jan; Niemann Claus U; Hansen Kirk C; Choi SooJinNa; Su Xiao; Frank James A; Fang Xiaohui; Hirose Ryutaro; Theodore Pierre; Sapru Anil; Burlingame Alma L; Matthay Michael A
Alterations in the proteome of pulmonary alveolar type II cells in the rat after hepatic ischemia-reperfusion.
Critical care medicine 2008;36(6):1846-54.
2008: Casati Paula; Campi Mabel; Chu Feixia; Suzuki Nagi; Maltby David; Guan Shenheng; Burlingame Alma L; Walbot Virginia
Histone acetylation and chromatin remodeling are required for UV-B-dependent transcriptional activation of regulated genes in maize.
The Plant cell 2008;20(4):827-42.
2008: Tang Wenqiang; Deng Zhiping; Oses-Prieto Juan A; Suzuki Nagi; Zhu Shengwei; Zhang Xin; Burlingame Alma L; Wang Zhi-Yong
Proteomics studies of brassinosteroid signal transduction using prefractionation and two-dimensional DIGE.
Molecular & cellular proteomics : MCP 2008;7(4):728-38.
2008: Trinidad Jonathan C; Thalhammer Agnes; Specht Christian G; Lynn Aenoch J; Baker Peter R; Schoepfer Ralf; Burlingame Alma L
Quantitative analysis of synaptic phosphorylation and protein expression.
Molecular & cellular proteomics : MCP 2008;7(4):684-96.
2008: Tomizawa Motohiro; Maltby David; Talley Todd T; Durkin Kathleen A; Medzihradszky Katalin F; Burlingame Alma L; Taylor Palmer; Casida John E
Atypical nicotinic agonist bound conformations conferring subtype selectivity.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(5):1728-32.
2008: Li Ziyin; Lee Ju Huck; Chu Feixia; Burlingame Alma L; Günzl Arthur; Wang Ching C
Identification of a novel chromosomal passenger complex and its unique localization during cytokinesis in Trypanosoma brucei.
PloS one 2008;3(6):e2354.
2007: Walther Tobias C; Aguilar Pablo S; Fröhlich Florian; Chu Feixia; Moreira Karen; Burlingame Alma L; Walter Peter
Pkh-kinases control eisosome assembly and organization.
The EMBO journal 2007;26(24):4946-55.
2007: Deng Zhiping; Zhang Xin; Tang Wenqiang; Oses-Prieto Juan A; Suzuki Nagi; Gendron Joshua M; Chen Huanjing; Guan Shenheng; Chalkley Robert J; Peterman T Kaye; Burlingame Alma L; Wang Zhi-Yong
A proteomics study of brassinosteroid response in Arabidopsis.
Molecular & cellular proteomics : MCP 2007;6(12):2058-71.
2007: Iacovides Demetris C; O'Shea Clodagh C; Oses-Prieto Juan; Burlingame Alma; McCormick Frank
Critical role for arginine methylation in adenovirus-infected cells.
Journal of virology 2007;81(23):13209-17.
2007: Olsen Olav; Funke Lars; Long Jia-fu; Fukata Masaki; Kazuta Toshinari; Trinidad Jonathan C; Moore Kimberly A; Misawa Hidemi; Welling Paul A; Burlingame Alma L; Zhang Mingjie; Bredt David S
Renal defects associated with improper polarization of the CRB and DLG polarity complexes in MALS-3 knockout mice.
The Journal of cell biology 2007;179(1):151-64.
2007: Medzihradszky K F; Guan S; Maltby D A; Burlingame A L
Sulfopeptide fragmentation in electron-capture and electron-transfer dissociation.
Journal of the American Society for Mass Spectrometry 2007;18(9):1617-24.
2007: Gampala Srinivas S; Kim Tae-Wuk; He Jun-Xian; Tang Wenqiang; Deng Zhiping; Bai Mingyi-Yi; Guan Shenheng; Lalonde Sylvie; Sun Ying; Gendron Joshua M; Chen Huanjing; Shibagaki Nakako; Ferl Robert J; Ehrhardt David; Chong Kang; Burlingame Alma L; Wang Zhi-Yong
An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis.
Developmental cell 2007;13(2):177-89.
2007: Tomizawa Motohiro; Maltby David; Medzihradszky Katalin F; Zhang Nanjing; Durkin Kathleen A; Presley Jack; Talley Todd T; Taylor Palmer; Burlingame Alma L; Casida John E
Defining nicotinic agonist binding surfaces through photoaffinity labeling.
Biochemistry 2007;46(30):8798-806.
2007: Allen Jasmina J; Li Manqing; Brinkworth Craig S; Paulson Jennifer L; Wang Dan; Hübner Anette; Chou Wen-Hai; Davis Roger J; Burlingame Alma L; Messing Robert O; Katayama Carol D; Hedrick Stephen M; Shokat Kevan M
A semisynthetic epitope for kinase substrates.
Nature methods 2007;4(6):511-6.
2007: Tomizawa Motohiro; Talley Todd T; Maltby David; Durkin Kathleen A; Medzihradszky Katalin F; Burlingame Alma L; Taylor Palmer; Casida John E
Mapping the elusive neonicotinoid binding site.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(21):9075-80.
2007: Hirsch Jan; Hansen Kirk C; Sapru Anil; Frank James A; Chalkley Robert J; Fang Xiaohui; Trinidad Jonathan C; Baker Peter; Burlingame Alma L; Matthay Michael A
Impact of low and high tidal volumes on the rat alveolar epithelial type II cell proteome.
American journal of respiratory and critical care medicine 2007;175(10):1006-13.
2007: Maloney Alison; Clarke Paul A; Naaby-Hansen Soren; Stein Rob; Koopman Jens-Oliver; Akpan Akunna; Yang Alice; Zvelebil Marketa; Cramer Rainer; Stimson Lindsay; Aherne Wynne; Banerji Udai; Judson Ian; Sharp Swee; Powers Marissa; deBilly Emmanuel; Salmons Joanne; Walton Michael; Burlingame Al; Waterfield Michael; Workman Paul
Gene and protein expression profiling of human ovarian cancer cells treated with the heat shock protein 90 inhibitor 17-allylamino-17-demethoxygeldanamycin.
Cancer research 2007;67(7):3239-53.
2007: Simon Matthew D; Chu Feixia; Racki Lisa R; de la Cruz Cecile C; Burlingame Alma L; Panning Barbara; Narlikar Geeta J; Shokat Kevan M
The site-specific installation of methyl-lysine analogs into recombinant histones.
Cell 2007;128(5):1003-12.
2007: Osés-Prieto Juan Antonio; Zhang Xin; Burlingame Alma L
Formation of epsilon-formyllysine on silver-stained proteins: implications for assignment of isobaric dimethylation sites by tandem mass spectrometry.
Molecular & cellular proteomics : MCP 2007;6(2):181-92.
2006: Chalkley R J; Brinkworth C S; Burlingame A L
Side-chain fragmentation of alkylated cysteine residues in electron capture dissociation mass spectrometry.
Journal of the American Society for Mass Spectrometry 2006;17(9):1271-4.
2006: Chu Feixia; Mahrus Sami; Craik Charles S; Burlingame Alma L
Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces.
Journal of the American Chemical Society 2006;128(32):10362-3.
2006: Conway Maria C Prieto; Whittal Randy M; Baldwin Michael A; Burlingame A L; Balhorn Rod
Electrospray mass spectrometry of NeuAc oligomers associated with the C fragment of the tetanus toxin.
Journal of the American Society for Mass Spectrometry 2006;17(7):967-76.
2006: Chu Feixia; Maynard Jason C; Chiosis Gabriela; Nicchitta Christopher V; Burlingame Alma L
Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94.
Protein science : a publication of the Protein Society 2006;15(6):1260-9.
2006: Zhou Qin; Cadrin Monique; Herrmann Harald; Chen Che-Hong; Chalkley Robert J; Burlingame Alma L; Omary M Bishr
Keratin 20 serine 13 phosphorylation is a stress and intestinal goblet cell marker.
The Journal of biological chemistry 2006;281(24):16453-61.
2006: Hirsch Jan; Hansen Kirk C; Choi Soojinna; Noh Joonhwa; Hirose Ryutaro; Roberts John P; Matthay Michael A; Burlingame Alma L; Maher Jacquelyn J; Niemann Claus U
Warm ischemia-induced alterations in oxidative and inflammatory proteins in hepatic Kupffer cells in rats.
Molecular & cellular proteomics : MCP 2006;5(6):979-86.
2006: Bradshaw Ralph A; Burlingame Alma L; Carr Steven; Aebersold Ruedi
Reporting protein identification data: the next generation of guidelines.
Molecular & cellular proteomics : MCP 2006;5(5):787-8.
2006: Recht J; Tsubota T; Tanny J C; Diaz R L; Berger J M; Zhang X; Garcia B A; Shabanowitz J; Burlingame A L; Hunt D F; Kaufman P D; Allis C D
Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(18):6988-93.
2006: Vosseller Keith; Trinidad Jonathan C; Chalkley Robert J; Specht Christian G; Thalhammer Agnes; Lynn Aenoch J; Snedecor June O; Guan Shenheng; Medzihradszky Katalin F; Maltby David A; Schoepfer Ralf; Burlingame Alma L
O-linked N-acetylglucosamine proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry.
Molecular & cellular proteomics : MCP 2006;5(5):923-34.
2006: Trinidad Jonathan C; Specht Christian G; Thalhammer Agnes; Schoepfer Ralf; Burlingame Alma L
Comprehensive identification of phosphorylation sites in postsynaptic density preparations.
Molecular & cellular proteomics : MCP 2006;5(5):914-22.
2006: Rodriguez-Viciana Pablo; Oses-Prieto Juan; Burlingame Alma; Fried Mike; McCormick Frank
A phosphatase holoenzyme comprised of Shoc2/Sur8 and the catalytic subunit of PP1 functions as an M-Ras effector to modulate Raf activity.
Molecular cell 2006;22(2):217-30.
2006: Jiménez Connie R; Spijker Sabine; de Schipper Simone; Lodder Johannes C; Janse Cornelis Kees; Geraerts Wijnand P M; van Minnen Jan; Syed Naweed I; Burlingame Alma L; Smit August B; Li KaWan
Peptidomics of a single identified neuron reveals diversity of multiple neuropeptides with convergent actions on cellular excitability.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2006;26(2):518-29.
2006: Chu Feixia; Nusinow Dmitri A; Chalkley Robert J; Plath Kathrin; Panning Barbara; Burlingame Alma L
Mapping post-translational modifications of the histone variant MacroH2A1 using tandem mass spectrometry.
Molecular & cellular proteomics : MCP 2006;5(1):194-203.
2005: Baxter Bonnie K; Abeliovich Hagai; Zhang Xin; Stirling Aline G; Burlingame Alma L; Goldfarb David S
Atg19p ubiquitination and the cytoplasm to vacuole trafficking pathway in yeast.
The Journal of biological chemistry 2005;280(47):39067-76.
2005: Casati Paula; Zhang Xing; Burlingame Alma L; Walbot Virginia
Analysis of leaf proteome after UV-B irradiation in maize lines differing in sensitivity.
Molecular & cellular proteomics : MCP 2005;4(11):1673-85.
2005: Olsen Olav; Moore Kimberly A; Fukata Masaki; Kazuta Toshinari; Trinidad Jonathan C; Kauer Fred W; Streuli Michel; Misawa Hidemi; Burlingame Alma L; Nicoll Roger A; Bredt David S
Neurotransmitter release regulated by a MALS-liprin-alpha presynaptic complex.
The Journal of cell biology 2005;170(7):1127-34.
2005: Bradshaw Ralph A; Burlingame Alma L; Carr Steve; Aebersold Ruedi
Protein identification: the good, the bad, and the ugly.
Molecular & cellular proteomics : MCP 2005;4(9):1221-2.
2005: Burlingame A L; Zhang Xin; Chalkley Robert J
Mass spectrometric analysis of histone posttranslational modifications.
Methods (San Diego, Calif.) 2005;36(4):383-94.
2005: Chalkley Robert J; Baker Peter R; Huang Lan; Hansen Kirk C; Allen Nadia P; Rexach Michael; Burlingame Alma L
Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliable and comprehensive automatic analysis of large datasets.
Molecular & cellular proteomics : MCP 2005;4(8):1194-204.
2005: Chalkley Robert J; Baker Peter R; Hansen Kirk C; Medzihradszky Katalin F; Allen Nadia P; Rexach Michael; Burlingame Alma L
Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: I. How much of the data is theoretically interpretable by search engines?
Molecular & cellular proteomics : MCP 2005;4(8):1189-93.
2005: Wysocka Joanna; Swigut Tomek; Milne Thomas A; Dou Yali; Zhang Xin; Burlingame Alma L; Roeder Robert G; Brivanlou Ali H; Allis C David
WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development.
Cell 2005;121(6):859-72.
2005: Fukata Yuko; Tzingounis Anastassios V; Trinidad Jonathan C; Fukata Masaki; Burlingame Alma L; Nicoll Roger A; Bredt David S
Molecular constituents of neuronal AMPA receptors.
The Journal of cell biology 2005;169(3):399-404.
2005: Tanaka Masahiro; Bateman Raynard; Rauh Daniel; Vaisberg Eugeni; Ramachandani Shyam; Zhang Chao; Hansen Kirk C; Burlingame Alma L; Trautman Jay K; Shokat Kevan M; Adams Cynthia L
An unbiased cell morphology-based screen for new, biologically active small molecules.
PLoS biology 2005;3(5):e128.
2005: Bradshaw Ralph A; Burlingame Alma L
From proteins to proteomics.
IUBMB life 2005;57(4-5):267-72.
2005: Trester-Zedlitz Michelle; Burlingame Al; Kobilka Brian; von Zastrow Mark
Mass spectrometric analysis of agonist effects on posttranslational modifications of the beta-2 adrenoceptor in mammalian cells.
Biochemistry 2005;44(16):6133-43.
2005: Trinidad J C; Thalhammer A; Specht C G; Schoepfer R; Burlingame A L
Phosphorylation state of postsynaptic density proteins.
Journal of neurochemistry 2005;92(6):1306-16.
2005: Vosseller Keith; Hansen Kirk C; Chalkley Robert J; Trinidad Jonathan C; Wells Lance; Hart Gerald W; Burlingame Alma L
Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol.
Proteomics 2005;5(2):388-98.
2005: Smith-Beckerman Diana M; Fung Kit W; Williams Katherine E; Auersperg Nelly; Godwin Andrew K; Burlingame Alma L
Proteome changes in ovarian epithelial cells derived from women with BRCA1 mutations and family histories of cancer.
Molecular & cellular proteomics : MCP 2005;4(2):156-68.
2005: Cutillas Pedro R; Biber Juerg; Marks Joanne; Jacob Richard; Stieger Bruno; Cramer Rainer; Waterfield Michael; Burlingame Alma L; Unwin Robert J
Proteomic analysis of plasma membrane vesicles isolated from the rat renal cortex.
Proteomics 2005;5(1):101-12.
2005: Huang Lan; Burlingame A L
Comprehensive mass spectrometric analysis of the 20S proteasome complex.
Methods in enzymology 2005;405():187-236.
2004: Chu Feixia; Shan Shu-ou; Moustakas Demetri T; Alber Frank; Egea Pascal F; Stroud Robert M; Walter Peter; Burlingame Alma L
Unraveling the interface of signal recognition particle and its receptor by using chemical cross-linking and tandem mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(47):16454-9.
2004: Medzihradszky K F; Zhang X; Chalkley R J; Guan S; McFarland M A; Chalmers M J; Marshall A G; Diaz R L; Allis C D; Burlingame A L
Characterization of Tetrahymena histone H2B variants and posttranslational populations by electron capture dissociation (ECD) Fourier transform ion cyclotron mass spectrometry (FT-ICR MS).
Molecular & cellular proteomics : MCP 2004;3(9):872-86.
2004: Cutillas Pedro R; Chalkley Robert J; Hansen Kirk C; Cramer Rainer; Norden Anthony G W; Waterfield Mike D; Burlingame Alma L; Unwin Robert J
The urinary proteome in Fanconi syndrome implies specificity in the reabsorption of proteins by renal proximal tubule cells.
American journal of physiology. Renal physiology 2004;287(3):F353-64.
2004: Vergés Marcel; Luton Frédéric; Gruber Carmen; Tiemann Frank; Reinders Lorri G; Huang Lan; Burlingame Alma L; Haft Carol R; Mostov Keith E
The mammalian retromer regulates transcytosis of the polymeric immunoglobulin receptor.
Nature cell biology 2004;6(8):763-9.
2004: Hirsch Jan; Hansen Kirk C; Burlingame Alma L; Matthay Michael A
Proteomics: current techniques and potential applications to lung disease.
American journal of physiology. Lung cellular and molecular physiology 2004;287(1):L1-23.
2004: Cutillas Pedro; Burlingame Alma; Unwin Robert
Proteomic strategies and their application in studies of renal function.
News in physiological sciences : an international journal of physiology produced jointly by the International Union of Physiological Sciences and the American Physiological Society 2004;19():114-9.
2004: Carr Steven; Aebersold Ruedi; Baldwin Michael; Burlingame Al; Clauser Karl; Nesvizhskii Alexey;
The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data.
Molecular & cellular proteomics : MCP 2004;3(6):531-3.
2004: Oda Yuko; Sihlbom Carina; Chalkley Robert J; Huang Lan; Rachez Christophe; Chang Chao-Pei Betty; Burlingame Alma L; Freedman Leonard P; Bikle Daniel D
Two distinct coactivators, DRIP/mediator and SRC/p160, are differentially involved in VDR transactivation during keratinocyte differentiation.
The Journal of steroid biochemistry and molecular biology 2004;89-90(1-5):273-6.
2004: Jiménez C R; ter Maat A; Pieneman A; Burlingame A L; Smit A B; Li K W
Spatio-temporal dynamics of the egg-laying-inducing peptides during an egg-laying cycle: a semiquantitative matrix-assisted laser desorption/ionization mass spectrometry approach.
Journal of neurochemistry 2004;89(4):865-75.
2004: Perlson Eran; Medzihradszky Katalin F; Darula Zsuzsanna; Munno David W; Syed Naweed I; Burlingame Alma L; Fainzilber Mike
Differential proteomics reveals multiple components in retrogradely transported axoplasm after nerve injury.
Molecular & cellular proteomics : MCP 2004;3(5):510-20.
2004: Medzihradszky K F; Darula Z; Perlson E; Fainzilber M; Chalkley R J; Ball H; Greenbaum D; Bogyo M; Tyson D R; Bradshaw R A; Burlingame A L
O-sulfonation of serine and threonine: mass spectrometric detection and characterization of a new posttranslational modification in diverse proteins throughout the eukaryotes.
Molecular & cellular proteomics : MCP 2004;3(5):429-40.
2004: Perlson Eran; Hanz Shlomit; Medzihradszky Katalin F; Burlingame Alma L; Fainzilber Mike
From snails to sciatic nerve: Retrograde injury signaling from axon to soma in lesioned neurons.
Journal of neurobiology 2004;58(2):287-94.
2004: Ishida Brian Y; Bailey Kathy R; Duncan Keith G; Chalkley Robert J; Burlingame A L; Kane John P; Schwartz Daniel M
Regulated expression of apolipoprotein E by human retinal pigment epithelial cells.
Journal of lipid research 2004;45(2):263-71.
2004: Wignall Sarah M; Gray Nathanael S; Chang Young-Tae; Juarez Lolita; Jacob Richard; Burlingame Al; Schultz Peter G; Heald Rebecca
Identification of a novel protein regulating microtubule stability through a chemical approach.
Chemistry & biology 2004;11(1):135-46.
2004: Cutillas Pedro R; Norden Anthony G; Cramer Rainer; Burlingame Alma L; Unwin Robert J
Urinary proteomics of renal Fanconi syndrome.
Contributions to nephrology 2004;141():155-69.
2003: Oda Yuko; Sihlbom Carina; Chalkley Robert J; Huang Lan; Rachez Christophe; Chang Chao-Pei Betty; Burlingame Alma L; Freedman Leonard P; Bikle Daniel D
Two distinct coactivators, DRIP/mediator and SRC/p160, are differentially involved in vitamin D receptor transactivation during keratinocyte differentiation.
Molecular endocrinology (Baltimore, Md.) 2003;17(11):2329-39.
2003: Burlingame Alma L
Toward deciphering the knowledge encrypted in large datasets.
Molecular & cellular proteomics : MCP 2003;2(7):425.
2003: Kotite L; Zhang L-H; Yu Z; Burlingame A L; Havel R J
Human apoC-IV: isolation, characterization, and immunochemical quantification in plasma and plasma lipoproteins.
Journal of lipid research 2003;44(7):1387-94.
2003: Hansen Kirk C; Schmitt-Ulms Gerold; Chalkley Robert J; Hirsch Jan; Baldwin Michael A; Burlingame A L
Mass spectrometric analysis of protein mixtures at low levels using cleavable 13C-isotope-coded affinity tag and multidimensional chromatography.
Molecular & cellular proteomics : MCP 2003;2(5):299-314.
2003: Cutillas Pedro R; Norden Anthony G W; Cramer Rainer; Burlingame Alma L; Unwin Robert J
Detection and analysis of urinary peptides by on-line liquid chromatography and mass spectrometry: application to patients with renal Fanconi syndrome.
Clinical science (London, England : 1979) 2003;104(5):483-90.
2003: Chalkley Robert J; Burlingame A L
Identification of novel sites of O-N-acetylglucosamine modification of serum response factor using quadrupole time-of-flight mass spectrometry.
Molecular & cellular proteomics : MCP 2003;2(3):182-90.
2002: Allen Nadia P C; Patel Samir S; Huang Lan; Chalkley Robert J; Burlingame Al; Lutzmann Malik; Hurt Eduard C; Rexach Michael
Deciphering networks of protein interactions at the nuclear pore complex.
Molecular & cellular proteomics : MCP 2002;1(12):930-46.
2002: Williams Katherine E; Carver Tonya A; Miranda J J L; Kautiainen Antti; Vogel John S; Dingley Karen; Baldwin Michael A; Turteltaub Kenneth W; Burlingame A L
Attomole detection of in vivo protein targets of benzene in mice: evidence for a highly reactive metabolite.
Molecular & cellular proteomics : MCP 2002;1(11):885-95.
2002: Hart S R; Waterfield M D; Burlingame A L; Cramer R
Factors governing the solubilization of phosphopeptides retained on ferric NTA IMAC beads and their analysis by MALDI TOFMS.
Journal of the American Society for Mass Spectrometry 2002;13(9):1042-51.
2002: Hawkes David B; Adams Gregory W; Burlingame Alma L; Ortiz de Montellano Paul R; De Voss James J
Cytochrome P450(cin) (CYP176A), isolation, expression, and characterization.
The Journal of biological chemistry 2002;277(31):27725-32.
2002: Zhang Kangling; Williams Katherine E; Huang Lan; Yau Peter; Siino Joseph S; Bradbury E Morton; Jones Patrick R; Minch Michael J; Burlingame Alma L
Histone acetylation and deacetylation: identification of acetylation and methylation sites of HeLa histone H4 by mass spectrometry.
Molecular & cellular proteomics : MCP 2002;1(7):500-8.
2002: Zhang Kangling; Tang Hui; Huang Lan; Blankenship James W; Jones Patrick R; Xiang Fan; Yau Peter M; Burlingame Alma L
Identification of acetylation and methylation sites of histone H3 from chicken erythrocytes by high-accuracy matrix-assisted laser desorption ionization-time-of-flight, matrix-assisted laser desorption ionization-postsource decay, and nanoelectrospray ionization tandem mass spectrometry.
Analytical biochemistry 2002;306(2):259-69.
2002: Zanata Silvio M; Lopes Marilene H; Mercadante Adriana F; Hajj Glaucia N M; Chiarini Luciana B; Nomizo Regina; Freitas Adriana R O; Cabral Ana L B; Lee Kil S; Juliano Maria A; de Oliveira Elizabeth; Jachieri Saul G; Burlingame Alma; Huang Lan; Linden Rafael; Brentani Ricardo R; Martins Vilma R
Stress-inducible protein 1 is a cell surface ligand for cellular prion that triggers neuroprotection.
The EMBO journal 2002;21(13):3307-16.
2002: Huang Lan; Baldwin Michael A; Maltby David A; Medzihradszky Katalin F; Baker Peter R; Allen Nadia; Rexach Michael; Edmondson Ricky D; Campbell Jennifer; Juhasz Peter; Martin Steven A; Vestal Marvin L; Burlingame Alma L
The identification of protein-protein interactions of the nuclear pore complex of Saccharomyces cerevisiae using high throughput matrix-assisted laser desorption ionization time-of-flight tandem mass spectrometry.
Molecular & cellular proteomics : MCP 2002;1(6):434-50.
2002: Michels Jenny; Geyer Armin; Mocanu Viorel; Welte Wolfram; Burlingame Alma L; Przybylski Michael
Structure and functional characterization of the periplasmic N-terminal polypeptide domain of the sugar-specific ion channel protein (ScrY porin).
Protein science : a publication of the Protein Society 2002;11(6):1565-74.
2002: Benvenuti Silvia; Cramer Rainer; Quinn Christopher C; Bruce Jim; Zvelebil Marketa; Corless Steven; Bond Jacquelyn; Yang Alice; Hockfield Susan; Burlingame Alma L; Waterfield Michael D; Jat Parmjit S
Differential proteome analysis of replicative senescence in rat embryo fibroblasts.
Molecular & cellular proteomics : MCP 2002;1(4):280-92.
2002: Liu Bin; Huang Lan; Sihlbom Carina; Burlingame Al; Marks James D
Towards proteome-wide production of monoclonal antibody by phage display.
Journal of molecular biology 2002;315(5):1063-73.
2002: Greenbaum Doron; Baruch Amos; Hayrapetian Linda; Darula Zsuzsanna; Burlingame Alma; Medzihradszky Katlin F; Bogyo Matthew
Chemical approaches for functionally probing the proteome.
Molecular & cellular proteomics : MCP 2002;1(1):60-8.
2001: Chalkley R J; Burlingame A L
Identification of GlcNAcylation sites of peptides and alpha-crystallin using Q-TOF mass spectrometry.
Journal of the American Society for Mass Spectrometry 2001;12(10):1106-13.
2001: Person M D; Brown K C; Mahrus S; Craik C S; Burlingame A L
Novel inter-protein cross-link identified in the GGH-ecotin D137Y dimer.
Protein science : a publication of the Protein Society 2001;10(8):1549-62.
2001: Allen N P; Huang L; Burlingame A; Rexach M
Proteomic analysis of nucleoporin interacting proteins.
The Journal of biological chemistry 2001;276(31):29268-74.
2001: Huang L; Jacob R J; Pegg S C; Baldwin M A; Wang C C; Burlingame A L; Babbitt P C
Functional assignment of the 20 S proteasome from Trypanosoma brucei using mass spectrometry and new bioinformatics approaches.
The Journal of biological chemistry 2001;276(30):28327-39.
2001: Jiménez C R; Huang L; Qiu Y; Burlingame A L
Enzymatic approaches for obtaining amino acid sequence: on-target ladder sequencing.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2001;Chapter 16():Unit 16.7.
2001: Jiménez C R; Huang L; Qiu Y; Burlingame A L
Searching sequence databases over the internet: protein identification using MS-tag.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2001;Chapter 16():Unit 16.6.
2001: Jiménez C R; Huang L; Qiu Y; Burlingame A L
Searching sequence databases over the internet: protein identification using MS-Fit.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2001;Chapter 16():Unit 16.5.
2001: Jiménez C R; Huang L; Qiu Y; Burlingame A L
In-gel digestion of proteins for MALDI-MS fingerprint mapping.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2001;Chapter 16():Unit 16.4.
2001: Jiménez C R; Huang L; Qiu Y; Burlingame A L
Sample preparation for MALDI mass analysis of peptides and proteins.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2001;Chapter 16():Unit 16.3.
2001: Habelhah H; Shah K; Huang L; Burlingame A L; Shokat K M; Ronai Z
Identification of new JNK substrate using ATP pocket mutant JNK and a corresponding ATP analogue.
The Journal of biological chemistry 2001;276(21):18090-5.
2001: Baldwin M A; Medzihradszky K F; Lock C M; Fisher B; Settineri T A; Burlingame A L
Matrix-assisted laser desorption/ionization coupled with quadrupole/orthogonal acceleration time-of-flight mass spectrometry for protein discovery, identification, and structural analysis.
Analytical chemistry 2001;73(8):1707-20.
2001: Hoang V M; Foulk R; Clauser K; Burlingame A; Gibson B W; Fisher S J
Functional proteomics: examining the effects of hypoxia on the cytotrophoblast protein repertoire.
Biochemistry 2001;40(13):4077-86.
2001: Polson A G; Huang L; Lukac D M; Blethrow J D; Morgan D O; Burlingame A L; Ganem D
Kaposi's sarcoma-associated herpesvirus K-bZIP protein is phosphorylated by cyclin-dependent kinases.
Journal of virology 2001;75(7):3175-84.
2001: Habelhah H; Shah K; Huang L; Ostareck-Lederer A; Burlingame A L; Shokat K M; Hentze M W; Ronai Z
ERK phosphorylation drives cytoplasmic accumulation of hnRNP-K and inhibition of mRNA translation.
Nature cell biology 2001;3(3):325-30.
2001: Medzihradszky K F; Leffler H; Baldwin M A; Burlingame A L
Protein identification by in-gel digestion, high-performance liquid chromatography, and mass spectrometry: peptide analysis by complementary ionization techniques.
Journal of the American Society for Mass Spectrometry 2001;12(2):215-21.
2001: Qiu Y; Benet L Z; Burlingame A L
Identification of hepatic protein targets of the reactive metabolites of the non-hepatotoxic regioisomer of acetaminophen, 3'-hydroxyacetanilide, in the mouse in vivo using two-dimensional gel electrophoresis and mass spectrometry.
Advances in experimental medicine and biology 2001;500():663-73.
2000: Greenbaum D; Medzihradszky K F; Burlingame A; Bogyo M
Epoxide electrophiles as activity-dependent cysteine protease profiling and discovery tools.
Chemistry & biology 2000;7(8):569-81.
2000: Whittal R M; Benz C C; Scott G; Semyonov J; Burlingame A L; Baldwin M A
Preferential oxidation of zinc finger 2 in estrogen receptor DNA-binding domain prevents dimerization and, hence, DNA binding.
Biochemistry 2000;39(29):8406-17.
2000: Williamson T L; Corson L B; Huang L; Burlingame A; Liu J; Bruijn L I; Cleveland D W
Toxicity of ALS-linked SOD1 mutants.
Science (New York, N.Y.) 2000;288(5465):399.
2000: Whittal R M; Ball H L; Cohen F E; Burlingame A L; Prusiner S B; Baldwin M A
Copper binding to octarepeat peptides of the prion protein monitored by mass spectrometry.
Protein science : a publication of the Protein Society 2000;9(2):332-43.
2000: Laiko V V; Baldwin M A; Burlingame A L
Atmospheric pressure matrix-assisted laser desorption/ionization mass spectrometry.
Analytical chemistry 2000;72(4):652-7.
2000: Medzihradszky K F; Campbell J M; Baldwin M A; Falick A M; Juhasz P; Vestal M L; Burlingame A L
The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer.
Analytical chemistry 2000;72(3):552-8.
2000: Chang W W; Huang L; Shen M; Webster C; Burlingame A L; Roberts J K
Patterns of protein synthesis and tolerance of anoxia in root tips of maize seedlings acclimated to a low-oxygen environment, and identification of proteins by mass spectrometry.
Plant physiology 2000;122(2):295-318.
2000: Cramer R; Burlingame A L
Employing target modifications for the investigation of liquid infrared matrix-assisted laser desorption/ionization mass spectrometry.
Rapid communications in mass spectrometry : RCM 2000;14(2):53-60.
1999: Yao Y; Toth C R; Huang L; Wong M L; Dias P; Burlingame A L; Coffino P; Wang C C
alpha5 subunit in Trypanosoma brucei proteasome can self-assemble to form a cylinder of four stacked heptamer rings.
The Biochemical journal 1999;344 Pt 2():349-58.
1999: Yao Y; Huang L; Krutchinsky A; Wong M L; Standing K G; Burlingame A L; Wang C C
Structural and functional characterizations of the proteasome-activating protein PA26 from Trypanosoma brucei.
The Journal of biological chemistry 1999;274(48):33921-30.
1999: Bossi A; Patel M J; Webb E J; Baldwin M A; Jacob R J; Burlingame A L; Righetti P G
Analysis of cross-linked human hemoglobin by conventional isoelectric focusing, immobilized pH gradients, capillary electrophoresis, and mass spectrometry.
Electrophoresis 1999;20(14):2810-7.
1999: Huang L; Shen M; Chernushevich I; Burlingame A L; Wang C C; Robertson C D
Identification and isolation of three proteasome subunits and their encoding genes from Trypanosoma brucei.
Molecular and biochemical parasitology 1999;102(2):211-23.
1999: Clauser K R; Baker P; Burlingame A L
Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.
Analytical chemistry 1999;71(14):2871-82.
1999: Wolfender J L; Chu F; Ball H; Wolfender F; Fainzilber M; Baldwin M A; Burlingame A L
Identification of tyrosine sulfation in Conus pennaceus conotoxins alpha-PnIA and alpha-PnIB: further investigation of labile sulfo- and phosphopeptides by electrospray, matrix-assisted laser desorption/ionization (MALDI) and atmospheric pressure MALDI mass spectrometry.
Journal of mass spectrometry : JMS 1999;34(4):447-54.
1999: Stimson E; Hope J; Chong A; Burlingame A L
Site-specific characterization of the N-linked glycans of murine prion protein by high-performance liquid chromatography/electrospray mass spectrometry and exoglycosidase digestions.
Biochemistry 1999;38(15):4885-95.
1999: Swanson K D; Taylor L K; Haung L; Burlingame A L; Landreth G E
Transcription factor phosphorylation by pp90(rsk2). Identification of Fos kinase and NGFI-B kinase I as pp90(rsk2).
The Journal of biological chemistry 1999;274(6):3385-95.
1999: Talrose V L; Person M D; Whittal R M; Walls F C; Burlingame A L; Baldwin M A
Insight into absorption of radiation/energy transfer in infrared matrix-assisted laser desorption/ionization: the roles of matrices, water and metal substrates.
Rapid communications in mass spectrometry : RCM 1999;13(21):2191-8.
1998: Cramer R; Richter W J; Stimson E; Burlingame A L
Analysis of phospho- and glycopolypeptides with infrared matrix-assisted laser desorption and ionization.
Analytical chemistry 1998;70(23):4939-44.
1998: Jiménez C R; Burlingame A L
Ultramicroanalysis of peptide profiles in biological samples using MALDI mass spectrometry.
Experimental nephrology 1998;6(5):421-8.
1998: Burlingame A L; Boyd R K; Gaskell S J
Mass spectrometry.
Analytical chemistry 1998;70(16):647R-716R.
1998: Qiu Y; Benet L Z; Burlingame A L
Identification of the hepatic protein targets of reactive metabolites of acetaminophen in vivo in mice using two-dimensional gel electrophoresis and mass spectrometry.
The Journal of biological chemistry 1998;273(28):17940-53.
1998: Prakobphol A; Thomsson K A; Hansson G C; Rosen S D; Singer M S; Phillips N J; Medzihradszky K F; Burlingame A L; Leffler H; Fisher S J
Human low-molecular-weight salivary mucin expresses the sialyl lewisx determinant and has L-selectin ligand activity.
Biochemistry 1998;37(14):4916-27.
1998: Brown K C; Yu Z; Burlingame A L; Craik C S
Determining protein-protein interactions by oxidative cross-linking of a glycine-glycine-histidine fusion protein.
Biochemistry 1998;37(13):4397-406.
1998: Qiu Y; Burlingame A L; Benet L Z
Mechanisms for covalent binding of benoxaprofen glucuronide to human serum albumin. Studies By tandem mass spectrometry.
Drug metabolism and disposition: the biological fate of chemicals 1998;26(3):246-56.
1998: Jiménez C R; Li K W; Dreisewerd K; Spijker S; Kingston R; Bateman R H; Burlingame A L; Smit A B; van Minnen J; Geraerts W P
Direct mass spectrometric peptide profiling and sequencing of single neurons reveals differential peptide patterns in a small neuronal network.
Biochemistry 1998;37(7):2070-6.
1998: Fainzilber M; Nakamura T; Lodder J C; Zlotkin E; Kits K S; Burlingame A L
gamma-Conotoxin-PnVIIA, a gamma-carboxyglutamate-containing peptide agonist of neuronal pacemaker cation currents.
Biochemistry 1998;37(6):1470-7.
1998: Medzihradszky K F; Besman M J; Burlingame A L
Reverse-phase capillary high performance liquid chromatography/high performance electrospray ionization mass spectrometry: an essential tool for the characterization of complex glycoprotein digests.
Rapid communications in mass spectrometry : RCM 1998;12(8):472-8.
1997: Yu Z; Friso G; Miranda J J; Patel M J; Lo-Tseng T; Moore E G; Burlingame A L
Structural characterization of human hemoglobin crosslinked by bis(3,5-dibromosalicyl) fumarate using mass spectrometric techniques.
Protein science : a publication of the Protein Society 1997;6(12):2568-77.
1997: Grogan A; Reeves E; Keep N; Wientjes F; Totty N F; Burlingame A L; Hsuan J J; Segal A W
Cytosolic phox proteins interact with and regulate the assembly of coronin in neutrophils.
Journal of cell science 1997;110 ( Pt 24)():3071-81.
1997: Caldera P S; Yu Z; Knegtel R M; McPhee F; Burlingame A L; Craik C S; Kuntz I D; Ortiz de Montellano P R
Alkylation of a catalytic aspartate group of the SIV protease by an epoxide inhibitor.
Bioorganic & medicinal chemistry 1997;5(11):2019-27.
1997: Machesky L M; Reeves E; Wientjes F; Mattheyse F J; Grogan A; Totty N F; Burlingame A L; Hsuan J J; Segal A W
Mammalian actin-related protein 2/3 complex localizes to regions of lamellipodial protrusion and is composed of evolutionarily conserved proteins.
The Biochemical journal 1997;328 ( Pt 1)():105-12.
1997: Medzihradszky K F; Besman M J; Burlingame A L
Structural characterization of site-specific N-glycosylation of recombinant human factor VIII by reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry.
Analytical chemistry 1997;69(19):3986-94.
1997: Talwar N; Pilz R B; Yu Z; Burlingame A; Boss G R
A low molecular weight substance purified from human placenta inhibits cAMP-dependent protein kinase and activates protein kinase C.
Molecular and cellular biochemistry 1997;170(1-2):75-83.
1997: Matsui N M; Smith D M; Clauser K R; Fichmann J; Andrews L E; Sullivan C M; Burlingame A L; Epstein L B
Immobilized pH gradient two-dimensional gel electrophoresis and mass spectrometric identification of cytokine-regulated proteins in ME-180 cervical carcinoma cells.
Electrophoresis 1997;18(3-4):409-17.
1997: Sullivan C M; Smith D M; Matsui N M; Andrews L E; Clauser K R; Chapeaurouge A; Burlingame A L; Epstein L B
Identification of constitutive and gamma-interferon- and interleukin 4-regulated proteins in the human renal carcinoma cell line ACHN.
Cancer research 1997;57(6):1137-43.
1996: Epstein L B; Smith D M; Matsui N M; Tran H M; Sullivan C; Raineri I; Burlingame A L; Clauser K R; Hall S C; Andrews L E
Identification of cytokine-regulated proteins in normal and malignant cells by the combination of two-dimensional polyacrylamide gel electrophoresis, mass spectrometry, Edman degradation and immunoblotting and approaches to the analysis of their functional roles.
Electrophoresis 1996;17(11):1655-70.
1996: Wang S X; Mure M; Medzihradszky K F; Burlingame A L; Brown D E; Dooley D M; Smith A J; Kagan H M; Klinman J P
A crosslinked cofactor in lysyl oxidase: redox function for amino acid side chains.
Science (New York, N.Y.) 1996;273(5278):1078-84.
1996: Fainzilber M; Lodder J C; van der Schors R C; Li K W; Yu Z; Burlingame A L; Geraerts W P; Kits K S
A novel hydrophobic omega-conotoxin blocks molluscan dihydropyridine-sensitive calcium channels.
Biochemistry 1996;35(26):8748-52.
1996: Burlingame A L; Boyd R K; Gaskell S J
Mass spectrometry.
Analytical chemistry 1996;68(12):599R-651R.
1996: Nakamura T; Yu Z; Fainzilber M; Burlingame A L
Mass spectrometric-based revision of the structure of a cysteine-rich peptide toxin with gamma-carboxyglutamic acid, TxVIIA, from the sea snail, Conus textile.
Protein science : a publication of the Protein Society 1996;5(3):524-30.
1996: Burlingame A L
Characterization of protein glycosylation by mass spectrometry.
Current opinion in biotechnology 1996;7(1):4-10.
1996: Settineri C A; Burlingame A L
Structural characterization of protein glycosylation using HPLC/electrospray ionization mass spectrometry and glycosidase digestion.
Methods in molecular biology (Clifton, N.J.) 1996;61():255-78.
1995: Tsutakawa S E; Medzihradszky K F; Flint A J; Burlingame A L; Koshland D E
Determination of in vivo phosphorylation sites in protein kinase C.
The Journal of biological chemistry 1995;270(45):26807-12.
1995: Iwahara S; Satoh H; Song D X; Webb J; Burlingame A L; Nagae Y; Muller-Eberhard U
Purification, characterization, and cloning of a heme-binding protein (23 kDa) in rat liver cytosol.
Biochemistry 1995;34(41):13398-406.
1995: Zia-Amirhosseini P; Ding A; Burlingame A L; McDonagh A F; Benet L Z
Synthesis and mass-spectrometric characterization of human serum albumins modified by covalent binding of two non-steroidal anti-inflammatory drugs: tolmetin and zomepirac.
The Biochemical journal 1995;311 ( Pt 2)():431-5.
1995: Fainzilber M; Nakamura T; Gaathon A; Lodder J C; Kits K S; Burlingame A L; Zlotkin E
A new cysteine framework in sodium channel blocking conotoxins.
Biochemistry 1995;34(27):8649-56.
1995: Pongracz K; Pathak D N; Nakamura T; Burlingame A L; Bodell W J
Activation of the tamoxifen derivative metabolite E to form DNA adducts: comparison with the adducts formed by microsomal activation of tamoxifen.
Cancer research 1995;55(14):3012-5.
1995: Clauser K R; Hall S C; Smith D M; Webb J W; Andrews L E; Tran H M; Epstein L B; Burlingame A L
Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(11):5072-6.
1995: Schindler P A; Settineri C A; Collet X; Fielding C J; Burlingame A L
Site-specific detection and structural characterization of the glycosylation of human plasma proteins lecithin:cholesterol acyltransferase and apolipoprotein D using HPLC/electrospray mass spectrometry and sequential glycosidase digestion.
Protein science : a publication of the Protein Society 1995;4(4):791-803.
1995: Ding A; Zia-Amirhosseini P; McDonagh A F; Burlingame A L; Benet L Z
Reactivity of tolmetin glucuronide with human serum albumin. Identification of binding sites and mechanisms of reaction by tandem mass spectrometry.
Drug metabolism and disposition: the biological fate of chemicals 1995;23(3):369-76.
1995: Adams G W; Mayer P; Medzihradszky K F; Burlingame A L
Mass spectrometric studies of the primary sequence and structure of bovine liver and serum amine oxidase.
Methods in enzymology 1995;258():90-114.
1994: Brown J D; Hann B C; Medzihradszky K F; Niwa M; Burlingame A L; Walter P
Subunits of the Saccharomyces cerevisiae signal recognition particle required for its functional expression.
The EMBO journal 1994;13(18):4390-400.
1994: Robertson J G; Adams G W; Medzihradszky K F; Burlingame A L; Villafranca J J
Complete assignment of disulfide bonds in bovine dopamine beta-hydroxylase.
Biochemistry 1994;33(38):11563-75.
1994: Fainzilber M; Hasson A; Oren R; Burlingame A L; Gordon D; Spira M E; Zlotkin E
New mollusc-specific alpha-conotoxins block Aplysia neuronal acetylcholine receptors.
Biochemistry 1994;33(32):9523-9.
1994: Burlingame A L; Boyd R K; Gaskell S J
Mass spectrometry.
Analytical chemistry 1994;66(12):634R-683R.
1994: Salto R; Babé L M; Li J; Rosé J R; Yu Z; Burlingame A; De Voss J J; Sui Z; Ortiz de Montellano P; Craik C S
In vitro characterization of nonpeptide irreversible inhibitors of HIV proteases.
The Journal of biological chemistry 1994;269(14):10691-8.
1994: Mu D; Medzihradszky K F; Adams G W; Mayer P; Hines W M; Burlingame A L; Smith A J; Cai D; Klinman J P
Primary structures for a mammalian cellular and serum copper amine oxidase.
The Journal of biological chemistry 1994;269(13):9926-32.
1993: Herrmann J; Turck C W; Atchison R E; Huflejt M E; Poulter L; Gitt M A; Burlingame A L; Barondes S H; Leffler H
Primary structure of the soluble lactose binding lectin L-29 from rat and dog and interaction of its non-collagenous proline-, glycine-, tyrosine-rich sequence with bacterial and tissue collagenase.
The Journal of biological chemistry 1993;268(35):26704-11.
1993: Mel S F; Falick A M; Burlingame A L; Stroud R M
Mapping a membrane-associated conformation of colicin Ia.
Biochemistry 1993;32(36):9473-9.
1993: Ding A; Ojingwa J C; McDonagh A F; Burlingame A L; Benet L Z
Evidence for covalent binding of acyl glucuronides to serum albumin via an imine mechanism as revealed by tandem mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(9):3797-801.
1993: Oda Y; Herrmann J; Gitt M A; Turck C W; Burlingame A L; Barondes S H; Leffler H
Soluble lactose-binding lectin from rat intestine with two different carbohydrate-binding domains in the same peptide chain.
The Journal of biological chemistry 1993;268(8):5929-39.
1993: Stahl N; Baldwin M A; Teplow D B; Hood L; Gibson B W; Burlingame A L; Prusiner S B
Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing.
Biochemistry 1993;32(8):1991-2002.
1993: Hall S C; Smith D M; Masiarz F R; Soo V W; Tran H M; Epstein L B; Burlingame A L
Mass spectrometric and Edman sequencing of lipocortin I isolated by two-dimensional SDS/PAGE of human melanoma lysates.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(5):1927-31.
1993: Kaur S; Pongracz K; Bodell W J; Burlingame A L
Bis(hydroxyphenylethyl)deoxyguanosine adducts identified by [32P]-postlabeling and four-sector tandem mass spectrometry: unanticipated adducts formed upon treatment of DNA with styrene 7,8-oxide.
Chemical research in toxicology 1993;6(1):125-32.
1992: Wen D X; Livingston B D; Medzihradszky K F; Kelm S; Burlingame A L; Paulson J C
Primary structure of Gal beta 1,3(4)GlcNAc alpha 2,3-sialyltransferase determined by mass spectrometry sequence analysis and molecular cloning. Evidence for a protein motif in the sialyltransferase gene family.
The Journal of biological chemistry 1992;267(29):21011-9.
1992: Sanders D A; Gillece-Castro B L; Burlingame A L; Koshland D E
Phosphorylation site of NtrC, a protein phosphatase whose covalent intermediate activates transcription.
Journal of bacteriology 1992;174(15):5117-22.
1992: Burlingame A L; Baillie T A; Russell D H
Mass spectrometry.
Analytical chemistry 1992;64(12):467R-502R.
1992: Stahl N; Baldwin M A; Hecker R; Pan K M; Burlingame A L; Prusiner S B
Glycosylinositol phospholipid anchors of the scrapie and cellular prion proteins contain sialic acid.
Biochemistry 1992;31(21):5043-53.
1992: Pongracz K; Kaur S; Burlingame A L; Bodell W J
Identification of N2-substituted 2'-deoxyguanosine-3'-phosphate adducts detected by 32P-postlabeling of styrene-oxide-treated DNA.
Carcinogenesis 1992;13(3):315-9.
1992: Medzihradszky K F; Gibson B W; Kaur S; Yu Z H; Medzihradszky D; Burlingame A L; Bass N M
The primary structure of fatty-acid-binding protein from nurse shark liver. Structural and evolutionary relationship to the mammalian fatty-acid-binding protein family.
European journal of biochemistry / FEBS 1992;203(3):327-39.
1992: Buechter D D; Medzihradszky K F; Burlingame A L; Kenyon G L
The active site of creatine kinase. Affinity labeling of cysteine 282 with N-(2,3-epoxypropyl)-N-amidinoglycine.
The Journal of biological chemistry 1992;267(4):2173-8.
1991: Gillece-Castro B L; Prakobphol A; Burlingame A L; Leffler H; Fisher S J
Structure and bacterial receptor activity of a human salivary proline-rich glycoprotein.
The Journal of biological chemistry 1991;266(26):17358-68.
1991: Poulter L; Karrer R; Burlingame A L
n-Alkyl p-aminobenzoates as derivatizing agents in the isolation, separation, and characterization of submicrogram quantities of oligosaccharides by liquid secondary ion mass spectrometry.
Analytical biochemistry 1991;195(1):1-13.
1991: Kaur S; Hall S C; Burlingame A L
Strategies for identification of covalent xenobiotic modifications in proteins by mass spectrometry.
Progress in clinical and biological research 1991;372():107-17.
1990: Medzihradszky K F; Gillece-Castro B L; Settineri C A; Townsend R R; Masiarz F R; Burlingame A L
Structure determination of O-linked glycopeptides by tandem mass spectrometry.
Biomedical & environmental mass spectrometry 1990;19(12):777-81.
1990: Settineri C A; Medzihradszky K F; Masiarz F R; Burlingame A L; Chu C; George-Nascimento C
Characterization of O-glycosylation sites in recombinant B-chain of platelet-derived growth factor expressed in yeast using liquid secondary ion mass spectrometry, tandem mass spectrometry and Edman sequence analysis.
Biomedical & environmental mass spectrometry 1990;19(11):665-76.
1990: Baldwin M A; Stahl N; Reinders L G; Gibson B W; Prusiner S B; Burlingame A L
Permethylation and tandem mass spectrometry of oligosaccharides having free hexosamine: analysis of the glycoinositol phospholipid anchor glycan from the scrapie prion protein.
Analytical biochemistry 1990;191(1):174-82.
1990: Pongracz K; Kaur S; Burlingame A L; Bodell W J
Detection of (3'-hydroxy)-3,N4-benzetheno-2'-deoxycytidine-3'-phosphate by 32P-postlabeling of DNA reacted with p-benzoquinone.
Carcinogenesis 1990;11(9):1469-72.
1990: Stahl N; Baldwin M A; Burlingame A L; Prusiner S B
Identification of glycoinositol phospholipid linked and truncated forms of the scrapie prion protein.
Biochemistry 1990;29(38):8879-84.
1990: Burlingame A L; Millington D S; Norwood D L; Russell D H
Mass spectrometry.
Analytical chemistry 1990;62(12):268R-303R.
1990: Janes S M; Mu D; Wemmer D; Smith A J; Kaur S; Maltby D; Burlingame A L; Klinman J P
A new redox cofactor in eukaryotic enzymes: 6-hydroxydopa at the active site of bovine serum amine oxidase.
Science (New York, N.Y.) 1990;248(4958):981-7.
1990: Bodell W J; Pongracz K; Kaur S; Burlingame A L; Liu S F; Rappaport S M
Investigation of styrene oxide-DNA adducts and their detection in workers exposed to styrene.
Progress in clinical and biological research 1990;340C():271-82.
1990: Gillece-Castro B L; Burlingame A L
Oligosaccharide characterization with high-energy collision-induced dissociation mass spectrometry.
Methods in enzymology 1990;193():689-712.
1990: Poulter L; Burlingame A L
Desorption mass spectrometry of oligosaccharides coupled with hydrophobic chromophores.
Methods in enzymology 1990;193():661-89.
1989: Sanders D A; Gillece-Castro B L; Stock A M; Burlingame A L; Koshland D E
Identification of the site of phosphorylation of the chemotaxis response regulator protein, CheY.
The Journal of biological chemistry 1989;264(36):21770-8.
1989: Kaur S; Hollander D; Haas R; Burlingame A L
Characterization of structural xenobiotic modifications in proteins by high sensitivity tandem mass spectrometry. Human hemoglobin treated in vitro with styrene 7,8-oxide.
The Journal of biological chemistry 1989;264(29):16981-4.
1989: Haraguchi T; Fisher S; Olofsson S; Endo T; Groth D; Tarentino A; Borchelt D R; Teplow D; Hood L; Burlingame A
Asparagine-linked glycosylation of the scrapie and cellular prion proteins.
Archives of biochemistry and biophysics 1989;274(1):1-13.
1989: Poulter L; Earnest J P; Stroud R M; Burlingame A L
Structure, oligosaccharide structures, and posttranslationally modified sites of the nicotinic acetylcholine receptor.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(17):6645-9.
1989: Hernández L M; Ballou L; Alvarado E; Gillece-Castro B L; Burlingame A L; Ballou C E
A new Saccharomyces cerevisiae mnn mutant N-linked oligosaccharide structure.
The Journal of biological chemistry 1989;264(20):11849-56.
1989: Pongracz K; Kaur S; Burlingame A L; Bodell W J
O6-substituted-2'-deoxyguanosine-3'-phosphate adducts detected by 32P post-labeling of styrene oxide treated DNA.
Carcinogenesis 1989;10(6):1009-13.
1989: Gibson B W; Webb J W; Yamasaki R; Fisher S J; Burlingame A L; Mandrell R E; Schneider H; Griffiss J M
Structure and heterogeneity of the oligosaccharides from the lipopolysaccharides of a pyocin-resistant Neisseria gonorrhoeae.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(1):17-21.
1988: Poulter L; Earnest J P; Stroud R M; Burlingame A L
Cesium ion liquid secondary ion mass spectrometry of membrane-bound glycoproteins: structural and topological considerations of acetylcholine receptor from Torpedo californica.
Biomedical & environmental mass spectrometry 1988;16(1-12):25-30.
1988: Xu X B; Burlingame A L
Environmental applications of organic mass spectrometry in China.
Biomedical and environmental sciences : BES 1988;1(3):253-69.
1988: Aberth W H; Burlingame A L
Effect of primary beam energy on the secondary ion sputtering efficiency of liquid secondary ionization mass spectrometry in the 5-30-keV range.
Analytical chemistry 1988;60(14):1426-8.
1988: Burlingame A L; Maltby D; Russell D H; Holland P T
Mass spectrometry.
Analytical chemistry 1988;60(12):294R-342R.
1988: Gibson B W; Yu Z G; Aberth W; Burlingame A L; Bass N M
Revision of the blocked N terminus of rat heart fatty acid-binding protein by liquid secondary ion mass spectrometry.
The Journal of biological chemistry 1988;263(9):4182-5.
1988: Webb J W; Jiang K; Gillece-Castro B L; Tarentino A L; Plummer T H; Byrd J C; Fisher S J; Burlingame A L
Structural characterization of intact, branched oligosaccharides by high performance liquid chromatography and liquid secondary ion mass spectrometry.
Analytical biochemistry 1988;169(2):337-49.
1987: Gillece-Castro B L; Fisher S J; Tarentino A L; Peterson D L; Burlingame A L
Structure of the oligosaccharide portion of human hepatitis B surface antigen.
Archives of biochemistry and biophysics 1987;256(1):194-201.
1986: Burlingame A L; Baillie T A; Derrick P J
Mass spectrometry.
Analytical chemistry 1986;58(5):165R-211R.
1985: Wickramanayake P P; Deinzer M L; Burlingame A L
Positive and negative liquid secondary ion mass spectrometry of chloro- and nitrophenylglucuronides.
Biomedical mass spectrometry 1985;12(3):127-33.
1984: Aberth W; Burlingame A L
Comparison of three geometries for a cesium primary beam liquid secondary ion mass spectrometry source.
Analytical chemistry 1984;56(14):2915-8.
1984: Latini R; Reginato R; Burlingame A L; Kates R E
High-performance liquid chromatographic isolation and fast atom bombardment mass spectrometric identification of Di-N-desethylamiodarone, a new metabolite of amiodarone in the dog.
Biomedical mass spectrometry 1984;11(9):466-71.
1983: Lampe M A; Burlingame A L; Whitney J; Williams M L; Brown B E; Roitman E; Elias P M
Human stratum corneum lipids: characterization and regional variations.
Journal of lipid research 1983;24(2):120-30.
1981: Straub K M; Burlingame A L
Carcinogen binding to DNA.
Biomedical mass spectrometry 1981;8(9):431-5.
1981: Xu X B; Nachtman J P; Rappaport S M; Wei E T; Lewis S; Burlingame A L
Identification of 2-nitrofluorene in diesel exhaust particulates.
Journal of applied toxicology : JAT 1981;1(3):196-8.
1981: Eberhard A; Burlingame A L; Eberhard C; Kenyon G L; Nealson K H; Oppenheimer N J
Structural identification of autoinducer of Photobacterium fischeri luciferase.
Biochemistry 1981;20(9):2444-9.
1981: Linscheid M; D'Angona J; Burlingame A L; Dell A; Ballou C E
Field desorption mass spectrometry of oligosaccharides.
Proceedings of the National Academy of Sciences of the United States of America 1981;78(3):1471-5.
1979: Lewis S; Kenyon C N; Meili J; Burlingame A L
High resolution gas chromatographic/real-time high resolution mass spectrometric identification of organic acids in human urine.
Analytical chemistry 1979;51(8):1275-85.
1977: Straub K M; Meehan T; Burlingame A L; Calvin M
Identification of the major adducts formed by reaction of benzo(a)pyrene diol epoxide with DNA in vitro.
Proceedings of the National Academy of Sciences of the United States of America 1977;74(12):5285-9.
1977: Burlingame A L
Assessment of the trace organic molecular composition of industrial and municipal wastewater effluents by capillary gas chromatography/real-time high-resolution mass spectrometry: a preliminary report.
Ecotoxicology and environmental safety 1977;1(1):111-50.
1971: Balogh B; Wilson D M; Burlingame A L
Carbon-13 NMR study of the stereochemistry of steranes from oil shale of the Green River formation (Eocene).
Nature 1971;233(5317):261-3.
1970: Simoneit B R; Schnoes H K; Haug P; Burlingame A L
Nitrogenous compounds of the Colorado Green River Formation oil shale: a preliminary analysis by mass spectrometry.
Nature 1970;226(5240):75-6.

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