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James Chen

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Oligonucleotide Array Sequence Analysis

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TOP 3
Wen Zou; Hung-Chia Chen; Hong Fang; Steven L Foley; Kelley B Hise; Wei-Jiun Lin; Joe Meehan; Rajesh Nayak; Hailin Tang; Joshua Xu; James J Chen
Meta-analysis of pulsed-field gel electrophoresis fingerprints based on a constructed Salmonella database.
Hung-Chia Chen; James J Chen
Assessment of reproducibility of cancer survival risk predictions across medical centers.
Ralph L Kodell; James J Chen
Quantitative benefit-risk analysis for evaluating drug therapies.

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All Publications

2013: Wen Zou; Hung-Chia Chen; Hong Fang; Steven L Foley; Kelley B Hise; Wei-Jiun Lin; Joe Meehan; Rajesh Nayak; Hailin Tang; Joshua Xu; James J Chen
Meta-analysis of pulsed-field gel electrophoresis fingerprints based on a constructed Salmonella database.
PloS one 2013;8(3):e59224.
2013: Hung-Chia Chen; James J Chen
Assessment of reproducibility of cancer survival risk predictions across medical centers.
BMC medical research methodology 2013;13():25.
2013: Ralph L Kodell; James J Chen
Quantitative benefit-risk analysis for evaluating drug therapies.
Journal of biopharmaceutical statistics 2013;23(1):231-8.
2013: Hung-Chia Chen; Yi Tsong; James J Chen
Data mining for signal detection of adverse event safety data.
Journal of biopharmaceutical statistics 2013;23(1):146-60.
2012: Suzanne M Morris; Dayton M Petibone; Benedetto Vitiello; Kristine L Witt; James J Chen; Wei-Jiun Lin; Donald R Mattison
The genetic toxicity of methylphenidate: a review of the current literature.
Journal of applied toxicology : JAT 2012;32(10):756-64.
2012: Dayton M Petibone; Ching-Wei Chang; James J Chen; Rohan M Kulkarni; Suzanne M Morris
Evaluation of p53 genotype on gene expression in the testis, liver, and heart from male C57BL/6 mice.
Transgenic research 2012;21(2):257-63.
2011: Donald R Mattison; Ralph J Callicott; Hung-Chia Chen; James J Chen; Daniel Doerge; Charlotte E Hotchkiss; James S Kesner; Hui-Min Lin; Ralph E Patton; Dayton M Petibone; Tony M Plant; Steven M Schrader; William Slikker; Terry W Turner; Nathan C Twaddle; Benedetto Vitiello; Suzanne M Morris
Pubertal delay in male nonhuman primates (Macaca mulatta) treated with methylphenidate.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(39):16301-6.
2011: Wei-Jiun Lin; James J Chen
An approach to identifying preclinical biomarkers of susceptibility to drug-induced toxicity.
Pharmacogenomics 2011;12(4):493-501.
2011: James J Chen
Consistency of predictive signature genes and classifiers.
Pharmacogenomics 2011;12(4):461-3.
2011: Ching-Wei Chang; James C Fuscoe; Tao Han; Wade M Hines; Frederick A Beland; James J Chen
Identification and categorization of liver toxicity markers induced by a related pair of drugs.
International journal of molecular sciences 2011;12(7):4609-24.
2011: Minho Chae; James J Chen
Reordering hierarchical tree based on bilateral symmetric distance.
PloS one 2011;6(8):e22546.
2010: Wen Zou; Wei-Jiun Lin; Steven L Foley; Chun-Houh Chen; Rajesh Nayak; James J Chen
Evaluation of pulsed-field gel electrophoresis profiles for identification of Salmonella serotypes.
Journal of clinical microbiology 2010;48(9):3122-6.
2010: Wei-Jiun Lin; Huey-miin Hsueh; James J Chen
Power and sample size estimation in microarray studies.
BMC bioinformatics 2010;11():48.
2010: James J Chen; Paula K Roberson; Michael J Schell
The false discovery rate: a key concept in large-scale genetic studies.
Cancer control : journal of the Moffitt Cancer Center 2010;17(1):58-62.
2009: Songjoon Baek; Chen-An Tsai; James J Chen
Development of biomarker classifiers from high-dimensional data.
Briefings in bioinformatics 2009;10(5):537-46.
2009: Ralph L Kodell; Bruce A Pearce; Songjoon Baek; Hojin Moon; Hongshik Ahn; John F Young; James J Chen
A model-free ensemble method for class prediction with application to biomedical decision making.
Artificial intelligence in medicine 2009;46(3):267-76.
2009: Songjoon Baek; Ohgew Kweon; Seong-Jae Kim; Dong-Heon Baek; James J Chen; Carl E Cerniglia
ClassRHO: a platform for classification of bacterial rieske non-heme iron ring-hydroxylating oxygenases.
Journal of microbiological methods 2009;76(3):307-9.
2009: Suzanne M Morris; Vasily N Dobrovolsky; Joseph G Shaddock; Roberta A Mittelstaedt; Michelle E Bishop; Mugimane G Manjanatha; Sharon D Shelton; Daniel R Doerge; Nathan C Twaddle; James J Chen; Chien-Ju Lin; Merle Paule; William Slikker; Charlotte E Hotchkiss; Dayton Petibone; James Tucker; Donald R Mattison
The genetic toxicology of methylphenidate hydrochloride in non-human primates.
Mutation research 2009;673(1):59-66.
2008: Mugimane G Manjanatha; Sharon D Shelton; Vasily N Dobrovolsky; Joseph G Shaddock; Lynda G McGarrity; Daniel R Doerge; Nathan W Twaddle; Chien-Ju Lin; James J Chen; Donald R Mattison; Suzanne M Morris
Pharmacokinetics, dose-range, and mutagenicity studies of methylphenidate hydrochloride in B6C3F1 mice.
Environmental and molecular mutagenesis 2008;49(8):585-93.
2008: Daniel R Doerge; John F Young; James J Chen; Michael Dinovi; Sara H Henry
Using dietary exposure and physiologically based pharmacokinetic/pharmacodynamic modeling in human risk extrapolations for acrylamide toxicity.
Journal of agricultural and food chemistry 2008;56(15):6031-8.
2008: Suzanne M Morris; Gregory S Akerman; Varsha G Desai; Chen-An Tsai; William H Tolleson; William B Melchior; Chien-Ju Lin; James C Fuscoe; Daniel A Casciano; James J Chen
Effect of p53 genotype on gene expression profiles in murine liver.
Mutation research 2008;640(1-2):54-73.
2008: Huixiao Hong; Zhenqiang Su; Weigong Ge; Leming Shi; Roger Perkins; Hong Fang; Joshua Xu; James J Chen; Tao Han; Jim Kaput; James C Fuscoe; Weida Tong
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC bioinformatics 2008;9 Suppl 9():S17.
2008: Songjoon Baek; Hojin Moon; Hongshik Ahn; Ralph L Kodell; Chien-Ju Lin; James J Chen
Identifying high-dimensional biomarkers for personalized medicine via variable importance ranking.
Journal of biopharmaceutical statistics 2008;18(5):853-68.
2008: Dung-Tsa Chen; Michael J Schell; James J Chen; William J Fulp; Steven Eschrich; Timothy J Yeatman
A predictive risk probability approach for microarray data with survival as an endpoint.
Journal of biopharmaceutical statistics 2008;18(5):841-52.
2007: James J Chen; S-J Wang; Chen-An Tsai; C-J Lin
Selection of differentially expressed genes in microarray data analysis.
The pharmacogenomics journal 2007;7(3):212-20.
2007: James J Chen
Key aspects of analyzing microarray gene-expression data.
Pharmacogenomics 2007;8(5):473-82.
2007: Ralph L Kodell; James J Chen
On the use of hierarchical probabilistic models for characterizing and managing uncertainty in risk/safety assessment.
Risk analysis : an official publication of the Society for Risk Analysis 2007;27(2):433-7.
2007: Dung-Tsa Chen; James J Chen; Gary Cheng; Sue-Hwa Lin; Seng-Jaw Soong
A two-stage binomial test approach of gene identification in oligonucleotide arrays.
Journal of biopharmaceutical statistics 2007;17(5):903-18.
2007: Chen-An Tsai; Dung-Tsa Chen; James J Chen; Charles M Balch; John F Thompson; Seng-Jaw Soong
An integrated tree-based classification approach to prognostic grouping with application to localized melanoma patients.
Journal of biopharmaceutical statistics 2007;17(3):445-60.