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Kei-Hoi Cheung

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Kei-Hoi Cheung; Matthias Samwald; Raymond K Auerbach; Mark B Gerstein
Structured digital tables on the Semantic Web: toward a structured digital literature.
Matthew E Holford; Ekta Khurana; Kei-Hoi Cheung; Mark Gerstein
Using semantic web rules to reason on an ontology of pseudogenes.
Kei-Hoi Cheung; Huajun Chen
Semantic Web for data harmonization in Chinese medicine.

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All Publications

2010: Kei-Hoi Cheung; Matthias Samwald; Raymond K Auerbach; Mark B Gerstein
Structured digital tables on the Semantic Web: toward a structured digital literature.
Molecular systems biology 2010;6():403.
2010: Matthew E Holford; Ekta Khurana; Kei-Hoi Cheung; Mark Gerstein
Using semantic web rules to reason on an ontology of pseudogenes.
Bioinformatics (Oxford, England) 2010;26(12):i71-8.
2010: Kei-Hoi Cheung; Huajun Chen
Semantic Web for data harmonization in Chinese medicine.
Chinese medicine 2010;5():2.
2010: Matthias Samwald; Huajun Chen; Alan Ruttenberg; Ernest Lim; Luis Marenco; Perry Miller; Gordon Shepherd; Kei-Hoi Cheung
Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.
Artificial intelligence in medicine 2010;48(1):21-8.
2009: Kei-Hoi Cheung; Ernest Lim; Matthias Samwald; Huajun Chen; Luis Marenco; Matthew E Holford; Thomas M Morse; Pradeep Mutalik; Gordon M Shepherd; Perry L Miller
Approaches to neuroscience data integration.
Briefings in bioinformatics 2009;10(4):345-53.
2009: Kei-Hoi Cheung; Eric Prud'hommeaux; Yimin Wang; Susie Stephens
Semantic Web for Health Care and Life Sciences: a review of the state of the art.
Briefings in bioinformatics 2009;10(2):111-3.
2009: Kei-Hoi Cheung; H Robert Frost; M Scott Marshall; Eric Prud'hommeaux; Matthias Samwald; Jun Zhao; Adrian Paschke
A journey to Semantic Web query federation in the life sciences.
BMC bioinformatics 2009;10 Suppl 10():S10.
2009: Matthias Samwald; Ernest Lim; Peter Masiar; Luis Marenco; Huajun Chen; Thomas Morse; Pradeep Mutalik; Gordon Shepherd; Perry Miller; Kei-Hoi Cheung
Entrez Neuron RDFa: a pragmatic semantic web application for data integration in neuroscience research.
Studies in health technology and informatics 2009;150():317-21.
2009: Matthew E Holford; Haseena Rajeevan; Hongyu Zhao; Kenneth K Kidd; Kei-Hoi Cheung
Semantic Web-based integration of cancer pathways and allele frequency data.
Cancer informatics 2009;8():19-30.
2009: Zhang Zhang; Kei-Hoi Cheung; Jeffrey Townsend
Bringing Web 2.0 to bioinformatics.
Briefings in bioinformatics 2009;10(1):1-10.
2008: Matthew Scotch; Kevin Yip; Kei-Hoi Cheung
Development of grid-like applications for public health using Web 2.0 mashup techniques.
Journal of the American Medical Informatics Association : JAMIA 2008;15(6):783-6.
2008: Kei-Hoi Cheung; Vipul Kashyap; Joanne S Luciano; Huajun Chen; Yimin Wang; Susie Stephens
Semantic mashup of biomedical data.
Journal of biomedical informatics 2008;41(5):683-6.
2008: Kei-Hoi Cheung; Kevin Yip; Jeffrey Townsend; Matthew Scotch
HCLS 2.0/3.0: health care and life sciences data mashup using Web 2.0/3.0.
Journal of biomedical informatics 2008;41(5):694-705.
2008: Maged N Kamel Boulos; Matthew Scotch; Kei-Hoi Cheung; David Burden
Web GIS in practice VI: a demo playlist of geo-mashups for public health neogeographers.
International journal of health geographics 2008;7():38.
2008: Robert D Bjornson; Nicholas Carriero; Christopher M Colangelo; Mark A Shifman; Kei-Hoi Cheung; Perry L Miller; Kenneth Williams
X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers.
Journal of proteome research 2008;7(1):293-9.
2007: Mark A Shifman; Yuli Li; Christopher M Colangelo; Kathryn L Stone; Terence L Wu; Kei-Hoi Cheung; Perry L Miller; Kenneth R Williams
YPED: a web-accessible database system for protein expression analysis.
Journal of proteome research 2007;6(10):4019-24.
2007: Chiquito J Crasto; Luis Marenco; Nian Liu; Thomas M Morse; Kei-Hoi Cheung; Peter C Lai; Gautam Bahl; Peter Masiar; Hugo Y K Lam; Ernest Lim; Huajin Chen; Prakash M Nadkarni; Michele Migliore; Perry L Miller; Gordon M Shepherd
SenseLab: new developments in disseminating neuroscience information.
Briefings in bioinformatics 2007;8(3):150-62.
2007: Andrew K Smith; Kei-Hoi Cheung; Kevin Yip; Martin Schultz; Mark K Gerstein
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
BMC bioinformatics 2007;8 Suppl 3():S5.
2007: Hugo Y K Lam; Luis Marenco; Timothy Clark; Yong Gao; June Kinoshita; Gordon Shepherd; Perry Miller; Elizabeth Wu; Gwendolyn Wong; Nian Liu; Chiquito J Crasto; Thomas M Morse; Susie Stephens; Kei-Hoi Cheung
AlzPharm: integration of neurodegeneration data using RDF.
BMC bioinformatics 2007;8 Suppl 3():S4.
2007: Alan Ruttenberg; Timothy Clark; William Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; M Scott Marshall; Chimezie Ogbuji; Jonathan Rees; Susie Stephens; Gwendolyn Wong; Elizabeth Wu; Davide Zaccagnini; Tonya Hongsermeier; Eric Neumann; Ivan Herman; Kei-Hoi Cheung
Advancing translational research with the Semantic Web.
BMC bioinformatics 2007;8 Suppl 3():S2.
2006: Hugo Y K Lam; Luis Marenco; Gordon M Shepherd; Perry L Miller; Kei-Hoi Cheung
Using web ontology language to integrate heterogeneous databases in the neurosciences.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():464-8.
2006: Kevin Yip; Peishen Qi; Martin Schultz; David W Cheung; Kei-Hoi Cheung
SemBiosphere: a semantic web approach to recommending microarray clustering services.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2006;():188-99.
2005: Kei-Hoi Cheung; Kevin Yip; Andrew Smith; Remko Deknikker; Andy Masiar; Mark Gerstein
YeastHub: a semantic web use case for integrating data in the life sciences domain.
Bioinformatics (Oxford, England) 2005;21 Suppl 1():i85-96.
2005: Haseena Rajeevan; Kei-Hoi Cheung; Rohit Gadagkar; Shannon Stein; Usha Soundararajan; Judith R Kidd; Andrew J Pakstis; Perry L Miller; Kenneth K Kidd
ALFRED: an allele frequency database for microevolutionary studies.
Evolutionary bioinformatics online 2005;1():1-10.
2005: Mark A Shifman; Kexin Sun; Christopher M Colangelo; Kei-Hoi Cheung; Perry Miller; Kenneth Williams
YPED: a proteomics database for protein expression analysis.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():1111.
2005: Nicholas Carriero; Michael V Osier; Kei-Hoi Cheung; Perry L Miller; Mark Gerstein; Hongyu Zhao; Baolin Wu; Scott Rifkin; Joseph Chang; Heping Zhang; Kevin White; Kenneth Williams; Martin Schultz
A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies.
Journal of the American Medical Informatics Association : JAMIA 2005;12(1):90-8.
2004: Kevin Yip; David W Cheung; Michael K Ng; Kei-Hoi Cheung
Identifying projected clusters from gene expression profiles.
Journal of biomedical informatics 2004;37(5):345-57.
2004: Anuj Kumar; Michael Seringhaus; Matthew C Biery; Robert J Sarnovsky; Lara Umansky; Stacy Piccirillo; Matthew Heidtman; Kei-Hoi Cheung; Craig J Dobry; Mark Gerstein; Nancy Craig; Michael Snyder
Large-scale mutagenesis of the yeast genome using a Tn7-derived multipurpose transposon.
Genome research 2004;14(10A):1975-86.
2004: Michael V Osier; Hongyu Zhao; Kei-Hoi Cheung
Handling multiple testing while interpreting microarrays with the Gene Ontology Database.
BMC bioinformatics 2004;5():124.
2004: Kei-Hoi Cheung; Janet Hager; Deyun Pan; Ranjana Srivastava; Shrikant M Mane; Yuli Li; Perry Miller; Kenneth R Williams
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms.
Nucleic acids research 2004;32(Web Server issue):W441-4.
2004: Remko de Knikker; Youjun Guo; Jin-Long Li; Albert K H Kwan; Kevin Yip; David W Cheung; Kei-Hoi Cheung
A web services choreography scenario for interoperating bioinformatics applications.
BMC bioinformatics 2004;5():25.
2004: Kei-Hoi Cheung; Remko de Knikker; Youjun Guo; Guoneng Zhong; Janet Hager; Kevin Yip; Albert K H Kwan; Peter Li; David W Cheung
Biosphere: the interoperation of web services in microarray cluster analysis.
Applied bioinformatics 2004;3(4):253-6.
2003: Deyun Pan; Ning Sun; Kei-Hoi Cheung; Zhong Guan; Ligeng Ma; Matthew Holford; Xingwang Deng; Hongyu Zhao
PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis.
BMC bioinformatics 2003;4():56.
2003: H Rajeevan; Michael V Osier; Kei-Hoi Cheung; H Deng; L Druskin; R Heinzen; Judith R Kidd; S Stein; Andrew J Pakstis; Nick Tosches; C-C Yeh; Perry L Miller; Kenneth K Kidd
ALFRED: the ALelle FREquency Database. Update.
Nucleic acids research 2003;31(1):270-1.
2002: Kei-Hoi Cheung; Janet Hager; Kenneth Nelson; Kevin White; Yuli Li; Michael Snyder; Kenneth Williams; Perry Miller
A dynamic approach to mapping coordinates between microplates and microarrays.
Journal of biomedical informatics 2002;35(5-6):306-12.
2002: Michael V Osier; Kei-Hoi Cheung; Judith R Kidd; Andrew J Pakstis; Perry L Miller; Kenneth K Kidd
ALFRED: An allele frequency database for anthropology.
American journal of physical anthropology 2002;119(1):77-83.
2002: Anuj Kumar; Seema Agarwal; John A Heyman; Sandra Matson; Matthew Heidtman; Stacy Piccirillo; Lara Umansky; Amar Drawid; Ronald Jansen; Yang Liu; Kei-Hoi Cheung; Perry Miller; Mark Gerstein; G Shirleen Roeder; Michael Snyder
Subcellular localization of the yeast proteome.
Genes & development 2002;16(6):707-19.
2002: Kei-Hoi Cheung; Kevin White; Janet Hager; Mark Gerstein; Valerie Reinke; Kenneth Nelson; Peter Masiar; Ranjana Srivastava; Yuli Li; Jinming Li; Hongyu Zhao; Jinming Li; David Allison; Michael Snyder; Perry Miller; Kenneth Williams
YMD: a microarray database for large-scale gene expression analysis.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():140-4.
2002: Anuj Kumar; Paul M Harrison; Kei-Hoi Cheung; Ning Lan; Nathaniel Echols; Paul Bertone; Perry Miller; Mark Gerstein; Michael Snyder
An integrated approach for finding overlooked genes in yeast.
Nature biotechnology 2002;20(1):58-63.
2002: Anuj Kumar; Kei-Hoi Cheung; Nick Tosches; Peter Masiar; Yang Liu; Perry Miller; Michael Snyder
The TRIPLES database: a community resource for yeast molecular biology.
Nucleic acids research 2002;30(1):73-5.
2001: Kei-Hoi Cheung; Aniruddha M Deshpande; Nick Tosches; S Nath; A Agrawal; Perry Miller; Anuj Kumar; Michael Snyder
A metadata framework for interoperating heterogeneous genome data using XML.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2001;():110-4.
2001: Michael V Osier; Kei-Hoi Cheung; Judith R Kidd; Andrew J Pakstis; Perry L Miller; Kenneth K Kidd
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms--an update.
Nucleic acids research 2001;29(1):317-9.
2000: Kei-Hoi Cheung; Perry Miller; A Sherman; S Weston; E Stratmann; Martin Schultz; Michael Snyder; Anuj Kumar
Graphically-enabled integration of bioinformatics tools allowing parallel execution.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2000;():141-5.
2000: Kei-Hoi Cheung; Perry L Miller; Judith R Kidd; Kenneth K Kidd; Michael V Osier; Andrew J Pakstis
ALFRED: a Web-accessible allele frequency database.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000;():639-50.
2000: Kei-Hoi Cheung; Michael V Osier; Judith R Kidd; Andrew J Pakstis; Perry L Miller; Kenneth K Kidd
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms.
Nucleic acids research 2000;28(1):361-3.
2000: Anuj Kumar; Kei-Hoi Cheung; PB Ross-Macdonald; P S Coelho; Perry Miller; Michael Snyder
TRIPLES: a database of gene function in Saccharomyces cerevisiae.
Nucleic acids research 2000;28(1):81-4.
1999: PB Ross-Macdonald; P S Coelho; T Roemer; Seema Agarwal; Anuj Kumar; Ronald Jansen; Kei-Hoi Cheung; A Sheehan; D Symoniatis; Lara Umansky; Matthew Heidtman; F K Nelson; H Iwasaki; Karl Hager; Mark Gerstein; Perry Miller; G Shirleen Roeder; Michael Snyder
Large-scale analysis of the yeast genome by transposon tagging and gene disruption.
Nature 1999;402(6760):413-8.
1998: Kei-Hoi Cheung; Prakash M Nadkarni; P Miller; Dong-guk Shin
Automatic query mapping among genomic databases: a pilot exploration.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():942-6.
1998: Kei-Hoi Cheung; Prakash M Nadkarni; Dong-guk Shin
A metadata approach to query interoperation between molecular biology databases.
Bioinformatics (Oxford, England) 1998;14(6):486-97.
1996: Kei-Hoi Cheung; Prakash M Nadkarni; S Silverstein; J R Kidd; Andrew J Pakstis; Perry Miller; Kenneth K Kidd
PhenoDB: an integrated client/server database for linkage and population genetics.
Computers and biomedical research, an international journal 1996;29(4):327-37.
1996: Prakash M Nadkarni; Kei-Hoi Cheung; C Castiglione; Perry Miller; Kenneth K Kidd
DNA workbench: a database package to manage regional physical mapping.
Journal of computational biology : a journal of computational molecular cell biology 1996;3(2):319-29.
1995: Prakash M Nadkarni; Kei-Hoi Cheung
SQLGEN: a framework for rapid client-server database application development.
Computers and biomedical research, an international journal 1995;28(6):479-99.
1992: Dean Sittig; Kei-Hoi Cheung; L Berman
Fuzzy classification of hemodynamic trends and artifacts: experiments with the heart rate.
International journal of clinical monitoring and computing 1992;9(4):251-7.
1992: Dean Sittig; Kei-Hoi Cheung
A parallel implementation of a multi-state Kalman filtering algorithm to detect ECG arrhythmias.
International journal of clinical monitoring and computing 1992;9(1):13-22.