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Jan Korbel

Research Profile

Genes & Molecular Sequences

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Johann Greil; Jan O Korbel; Obul R Bandapalli; Isabelle Bekeredjian-Ding; Volker Daniel; Christoph Drees; Thomas Giese; Tobias Rausch; Susanne Roth; Jürgen Ruland; Adrian M Stütz; Andreas E Kulozik
Whole-exome sequencing links caspase recruitment domain 11 (CARD11) inactivation to severe combined immunodeficiency.
Jan O Korbel; Peter J Campbell
Criteria for inference of chromothripsis in cancer genomes.
Thomas Zichner; Tobias Rausch; Adrian M Stütz; Martina Braun; Enrico Cannavó; Eileen E M Furlong; David A Garfield; Jan O Korbel
Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing.

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All Publications

2013: Johann Greil; Jan O Korbel; Obul R Bandapalli; Isabelle Bekeredjian-Ding; Volker Daniel; Christoph Drees; Thomas Giese; Tobias Rausch; Susanne Roth; Jürgen Ruland; Adrian M Stütz; Andreas E Kulozik
Whole-exome sequencing links caspase recruitment domain 11 (CARD11) inactivation to severe combined immunodeficiency.
The Journal of allergy and clinical immunology 2013;131(5):1376-1383.e3.
2013: Jan O Korbel; Peter J Campbell
Criteria for inference of chromothripsis in cancer genomes.
Cell 2013;152(6):1226-36.
2013: Thomas Zichner; Tobias Rausch; Adrian M Stütz; Martina Braun; Enrico Cannavó; Eileen E M Furlong; David A Garfield; Jan O Korbel
Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing.
Genome research 2013;23(3):568-79.
2013: Joachim Weischenfeldt; François Spitz; Orsolya Symmons; Jan O Korbel
Phenotypic impact of genomic structural variation: insights from and for human disease.
Nature reviews. Genetics 2013;14(2):125-38.
2012: Tobias Rausch; Andreas Schlattl; Adrian M Stütz; Thomas Zichner; Vladimir Benes; Jan O Korbel
DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Bioinformatics (Oxford, England) 2012;28(18):i333-i339.
2011: Andreas Schlattl; Sebastian M Waszak; Simon Anders; Wolfgang Huber; Jan O Korbel
Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions.
Genome research 2011;21(12):2004-13.
2011: Chip Stewart; Michael P Strömberg; Adrian M Stütz; Alexander E Urban; Jerilyn A Walker; Jinchuan Xing; Mark A Batzer; Michele Busby; Erik Garrison; Fabian Grubert; Chad Huff; Amit R Indap; Lynn B Jorde; Miriam K Konkel; Jan O Korbel; Deniz Kural; Hugo Y K Lam; Wan-Ping Lee; Gabor T Marth; Michael P Snyder
A comprehensive map of mobile element insertion polymorphisms in humans.
PLoS genetics 2011;7(8):e1002236.
2010: Maya Kasowski; Fabian Grubert; Christopher Heffelfinger; Manoj Hariharan; Akwasi Asabere; Sebastian M Waszak; Lukas Habegger; Joel S Rozowsky; Minyi Shi; Alexander E Urban; Mi-Young Hong; Konrad Karczewski; Wolfgang Huber; Sherman M Weissman; Mark B Gerstein; Jan O Korbel; Michael Snyder
Variation in transcription factor binding among humans.
Science (New York, N.Y.) 2010;328(5975):232-5.
2010: Sebastian M Waszak; Yehudit Hasin; Thomas Zichner; Tsviya Olender; Ifat Keydar; Miriam Khen; Adrian M Stütz; Andreas Schlattl; Doron Lancet; Jan O Korbel
Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity.
PLoS computational biology 2010;6(11):e1000988.
2010: Hugo Y K Lam; Xinmeng Jasmine Mu; Adrian M Stütz; Andrea Tanzer; Philip D Cayting; Michael Snyder; Philip M Kim; Jan O Korbel; Mark B Gerstein
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
Nature biotechnology 2010;28(1):47-55.
2009: Tara A Gianoulis; Jeroen Raes; Prianka V Patel; Robert Bjornson; Jan O Korbel; Ivica Letunic; Takuji Yamada; Alberto Paccanaro; Lars Jensen; Michael Snyder; Peer Bork; Mark Gerstein
Quantifying environmental adaptation of metabolic pathways in metagenomics.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(5):1374-9.
2009: Lu-Yong Wang; Alexej Abyzov; Jan O Korbel; Michael Snyder; Mark Gerstein
MSB: a mean-shift-based approach for the analysis of structural variation in the genome.
Genome research 2009;19(1):106-17.
2008: Philip M Kim; Hugo Y K Lam; Alexander Eckehart Urban; Jan O Korbel; Jason Affourtit; Fabian Grubert; Xueying Chen; Sherman Weissman; Michael Snyder; Mark Gerstein
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history.
Genome research 2008;18(12):1865-74.
2008: Jan O Korbel; Philip M Kim; Xueying Chen; Alexander Eckehart Urban; Sherman Weissman; Michael Snyder; Mark Gerstein
The current excitement about copy-number variation: how it relates to gene duplications and protein families.
Current opinion in structural biology 2008;18(3):366-74.
2007: Philip M Kim; Jan O Korbel; Mark Gerstein
Positive selection at the protein network periphery: evaluation in terms of structural constraints and cellular context.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(51):20274-9.
2007: Jan O Korbel; Alexander Eckehart Urban; Jason P Affourtit; Brian Godwin; Fabian Grubert; Jan Fredrik Simons; Philip M Kim; Dean Palejev; Nicholas Carriero; Lei Du; bruce taillon; Zhoutao Chen; Andrea Tanzer; A C Eugenia Saunders; jianxiang chi; Fengtang Yang; Nigel P Carter; Matthew E Hurles; Sherman M Weissman; Timothy T Harkins; Mark Gerstein; Michael Egholm; Michael Snyder
Paired-end mapping reveals extensive structural variation in the human genome.
Science (New York, N.Y.) 2007;318(5849):420-6.
2007: Jan O Korbel; Alexander Eckehart Urban; Fabian Grubert; Du Jiang; Thomas E Royce; Peter Starr; Guoneng Zhong; Beverly S Emanuel; Sherman M Weissman; Michael Snyder; Mark Gerstein
Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(24):10110-5.
2007: Stefan Washietl; Jakob S Pedersen; Jan O Korbel; Claudia Stocsits; Andreas R Gruber; Jorg Hackermuller; Jana Hertel; Manja Lindemeyer; Kristin Reiche; Andrea Tanzer; Catherine Ucla; Carine Wyss; Stylianos E Antonarakis; France Denoeud; Julien Lagarde; Jorg Drenkow; Philipp Kapranov; Thomas Gingeras; Roderic Guigó; Michael Snyder; Mark Gerstein; Alexandre Reymond; Ivo L Hofacker; Peter F Stadler
Structured RNAs in the ENCODE selected regions of the human genome.
Genome research 2007;17(6):852-64.
2007: Joel S Rozowsky; Daniel Newburger; Fred Sayward; Jiaqian Wu; Greg Jordan; Jan O Korbel; Ugrappa Nagalakshmi; Jin Yang; Deyou Zheng; Roderic Guigó; Thomas Gingeras; Sherman Weissman; Perry Miller; Michael Snyder; Mark Gerstein
The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.
Genome research 2007;17(6):732-45.
2007: Mark Gerstein; Can Bruce; Joel S Rozowsky; Deyou Zheng; Du Jiang; Jan O Korbel; Olof Emanuelsson; Zhengdong D Zhang; Sherman Weissman; Michael Snyder
What is a gene, post-ENCODE? History and updated definition.
Genome research 2007;17(6):669-81.
2006: Du Jiang; Joel S Rozowsky; Jan O Korbel; Zhengdong D Zhang; Thomas E Royce; Martin H Schultz; Michael Snyder; Mark Gerstein
A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.
Bioinformatics (Oxford, England) 2006;22(24):3016-24.
2006: Alexander Eckehart Urban; Jan O Korbel; Rebecca Selzer; Richmond Todd; April Hacker; George V Popescu; Joseph F Cubells; Roland Green; Beverly S Emanuel; Mark Gerstein; Sherman M Weissman; Michael Snyder
High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(12):4534-9.
2006: Joel S Rozowsky; J Wu; Zheng Lian; Ugrappa Nagalakshmi; Jan O Korbel; Philipp Kapranov; Deyou Zheng; S Dyke; Peter E Newburger; Perry Miller; Thomas Gingeras; Sherman Weissman; Mark Gerstein; Michael Snyder
Novel transcribed regions in the human genome.
Cold Spring Harbor symposia on quantitative biology 2006;71():111-6.