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Gajendra Raghava

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Concepts & Ideas

Procedures

Activities & Behaviors

Occupations

Genes & Molecular Sequences

Amino Acid Sequence

Chemicals & Drugs

Phenomena

Protein Binding

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Co-Publications
Name
18
Bhasin, Manoj
7
Saha, Sudipto
6
Lata, Sneh
4
Issac, Biju
4
Kaur, Harpreet
4
Varshney, Grish
3
Agrewala, Javed
3
Kaur, Harpreet
3
Kaur, Harpreet
2
Barton, Geoffrey
2
Gromiha, Michael
2
Sahni, Girish
1
Schlessinger, Avner
1
Searle, Stephen
1
Sette, Alessandro

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Publications

TOP 3
Kumar Manish; Raghava Gajendra P S
Prediction of nuclear proteins using SVM and HMM models.
Sethi Deepti; Garg Aarti; Raghava G P S
DPROT: prediction of disordered proteins using evolutionary information.
Vivona Sandro; Gardy Jennifer L; Ramachandran Srinivasan; Brinkman Fiona S L; Raghava G P S; Flower Darren R; Filippini Francesco
Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

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All Publications

2009: Kumar Manish; Raghava Gajendra P S
Prediction of nuclear proteins using SVM and HMM models.
BMC bioinformatics 2009;10():22.
2008: Sethi Deepti; Garg Aarti; Raghava G P S
DPROT: prediction of disordered proteins using evolutionary information.
Amino acids 2008;35(3):599-605.
2008: Vivona Sandro; Gardy Jennifer L; Ramachandran Srinivasan; Brinkman Fiona S L; Raghava G P S; Flower Darren R; Filippini Francesco
Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.
Trends in biotechnology 2008;26(4):190-200.
2008: Lata Sneh; Raghava G P S
CytoPred: a server for prediction and classification of cytokines.
Protein engineering, design & selection : PEDS 2008;21(4):279-82.
2008: Kumar Manish; Gromiha M Michael; Raghava G P S
Prediction of RNA binding sites in a protein using SVM and PSSM profile.
Proteins 2008;71(1):189-94.
2008: Garg Aarti; Raghava Gajendra P S
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins.
BMC bioinformatics 2008;9():503.
2008: Garg Aarti; Raghava Gajendra P S
A machine learning based method for the prediction of secretory proteins using amino acid composition, their order and similarity-search.
In silico biology 2008;8(2):129-40.
2008: Kumar Manish; Thakur Varun; Raghava Gajendra P S
COPid: composition based protein identification.
In silico biology 2008;8(2):121-8.
2008: Kalita Mridul K; Nandal Umesh K; Pattnaik Ansuman; Sivalingam Anandhan; Ramasamy Gowthaman; Kumar Manish; Raghava Gajendra P S; Gupta Dinesh
CyclinPred: a SVM-based method for predicting cyclin protein sequences.
PloS one 2008;3(7):e2605.
2008: Lata Sneh; Raghava Gajendra P S
PRRDB: a comprehensive database of pattern-recognition receptors and their ligands.
BMC genomics 2008;9():180.
2008: Verma Ruchi; Tiwari Ajit; Kaur Sukhwinder; Varshney Grish C; Raghava Gajendra Ps
Identification of proteins secreted by malaria parasite into erythrocyte using SVM and PSSM profiles.
BMC bioinformatics 2008;9():201.
2007: Muthukrishnan S; Garg Aarti; Raghava G P S
Oxypred: prediction and classification of oxygen-binding proteins.
Genomics, proteomics & bioinformatics / Beijing Genomics Institute 2007;5(3-4):250-2.
2007: Greenbaum Jason A; Andersen Pernille Haste; Blythe Martin; Bui Huynh-Hoa; Cachau Raul E; Crowe James; Davies Matthew; Kolaskar A S; Lund Ole; Morrison Sherrie; Mumey Brendan; Ofran Yanay; Pellequer Jean-Luc; Pinilla Clemencia; Ponomarenko Julia V; Raghava G P S; van Regenmortel Marc H V; Roggen Erwin L; Sette Alessandro; Schlessinger Avner; Sollner Johannes; Zand Martin; Peters Bjoern
Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools.
Journal of molecular recognition : JMR 2007;20(2):75-82.
2007: Bhasin Manoj; Raghava G P S
A hybrid approach for predicting promiscuous MHC class I restricted T cell epitopes.
Journal of biosciences 2007;32(1):31-42.
2007: Saha Sudipto; Raghava Gajendra P S
Predicting virulence factors of immunological interest.
Methods in molecular biology (Clifton, N.J.) 2007;409():407-15.
2007: Saha Sudipto; Raghava Gajendra P S
Prediction methods for B-cell epitopes.
Methods in molecular biology (Clifton, N.J.) 2007;409():387-94.
2007: Bhasin Manoj; Lata Sneh; Raghava G P S
TAPPred prediction of TAP-binding peptides in antigens.
Methods in molecular biology (Clifton, N.J.) 2007;409():381-6.
2007: Lata Sneh; Bhasin Manoj; Raghava Gajendra P S
Application of machine learning techniques in predicting MHC binders.
Methods in molecular biology (Clifton, N.J.) 2007;409():201-15.
2007: Srivastava Shilpy; Singh Mahender Kumar; Raghava Gajendra P S; Varshney Grish C
Searching haptens, carrier proteins, and anti-hapten antibodies.
Methods in molecular biology (Clifton, N.J.) 2007;409():125-39.
2007: Saha Sudipto; Raghava Gajendra P S
Searching and mapping of B-cell epitopes in Bcipep database.
Methods in molecular biology (Clifton, N.J.) 2007;409():113-24.
2007: Bhasin Manoj; Lata Sneh; Raghava Gajendra P S
Searching and mapping of T-cell epitopes, MHC binders, and TAP binders.
Methods in molecular biology (Clifton, N.J.) 2007;409():95-112.
2007: Saha Sudipto; Raghava Gajendra P S
BTXpred: prediction of bacterial toxins.
In silico biology 2007;7(4-5):405-12.
2007: Saha Sudipto; Raghava Gajendra P S
Prediction of neurotoxins based on their function and source.
In silico biology 2007;7(4-5):369-87.
2007: Pashov Anastas; Monzavi-Karbassi Behjatolah; Raghava Gajendra; Kieber-Emmons Thomas
Peptide mimotopes as prototypic templates of broad-spectrum surrogates of carbohydrate antigens for cancer vaccination.
Critical reviews in immunology 2007;27(3):247-70.
2007: Kumar Manish; Gromiha Michael M; Raghava Gajendra P S
Identification of DNA-binding proteins using support vector machines and evolutionary profiles.
BMC bioinformatics 2007;8():463.
2007: Kaur Harpreet; Garg Aarti; Raghava G P S
PEPstr: a de novo method for tertiary structure prediction of small bioactive peptides.
Protein and peptide letters 2007;14(7):626-31.
2007: Rashid Mamoon; Saha Sudipto; Raghava Gajendra Ps
Support Vector Machine-based method for predicting subcellular localization of mycobacterial proteins using evolutionary information and motifs.
BMC bioinformatics 2007;8():337.
2007: Lata Sneh; Sharma B K; Raghava G P S
Analysis and prediction of antibacterial peptides.
BMC bioinformatics 2007;8():263.
2007: Mishra Nitish Kumar; Kumar Manish; Raghava G P S
Support vector machine based prediction of glutathione S-transferase proteins.
Protein and peptide letters 2007;14(6):575-80.
2006: Saha Sudipto; Zack Jyoti; Singh Balvinder; Raghava G P S
VGIchan: prediction and classification of voltage-gated ion channels.
Genomics, proteomics & bioinformatics / Beijing Genomics Institute 2006;4(4):253-8.
2006: Saha Sudipto; Raghava G P S
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.
Proteins 2006;65(1):40-8.
2006: Saha Sudipto; Raghava G P S
AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.
Nucleic acids research 2006;34(Web Server issue):W202-9.
2006: Kumar Manish; Verma Ruchi; Raghava Gajendra P S
Prediction of mitochondrial proteins using support vector machine and hidden Markov model.
The Journal of biological chemistry 2006;281(9):5357-63.
2006: Saha Sudipto; Raghava G P S
VICMpred: an SVM-based method for the prediction of functional proteins of Gram-negative bacteria using amino acid patterns and composition.
Genomics, proteomics & bioinformatics / Beijing Genomics Institute 2006;4(1):42-7.
2006: Singh Mahender Kumar; Srivastava Shilpy; Raghava G P S; Varshney Grish C
HaptenDB: a comprehensive database of haptens, carrier proteins and anti-hapten antibodies.
Bioinformatics (Oxford, England) 2006;22(2):253-5.
2006: Kaundal Rakesh; Kapoor Amar S; Raghava Gajendra P S
Machine learning techniques in disease forecasting: a case study on rice blast prediction.
BMC bioinformatics 2006;7():485.
2006: Raghava G P S; Barton Geoffrey J
Quantification of the variation in percentage identity for protein sequence alignments.
BMC bioinformatics 2006;7():415.
2006: Kaur Harpreet; Raghava Gajendra Pal Singh
Prediction of C alpha-H...O and C alpha-H...pi interactions in proteins using recurrent neural network.
In silico biology 2006;6(1-2):111-25.
2005: Garg Aarti; Kaur Harpreet; Raghava G P S
Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure.
Proteins 2005;61(2):318-24.
2005: Bhasin Manoj; Raghava G P S
Pcleavage: an SVM based method for prediction of constitutive proteasome and immunoproteasome cleavage sites in antigenic sequences.
Nucleic acids research 2005;33(Web Server issue):W202-7.
2005: Kumar Manish; Bhasin Manoj; Natt Navjot K; Raghava G P S
BhairPred: prediction of beta-hairpins in a protein from multiple alignment information using ANN and SVM techniques.
Nucleic acids research 2005;33(Web Server issue):W154-9.
2005: Bhasin Manoj; Raghava G P S
GPCRsclass: a web tool for the classification of amine type of G-protein-coupled receptors.
Nucleic acids research 2005;33(Web Server issue):W143-7.
2005: Bhasin Manoj; Garg Aarti; Raghava G P S
PSLpred: prediction of subcellular localization of bacterial proteins.
Bioinformatics (Oxford, England) 2005;21(10):2522-4.
2005: Garg Aarti; Bhasin Manoj; Raghava Gajendra P S
Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search.
The Journal of biological chemistry 2005;280(15):14427-32.
2005: Saha Sudipto; Bhasin Manoj; Raghava Gajendra P S
Bcipep: a database of B-cell epitopes.
BMC genomics 2005;6(1):79.
2005: Raghava Gajendra P S; Han Joon H
Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.
BMC bioinformatics 2005;6():59.
2004: Kaur Harpreet; Raghava G P S
A neural network method for prediction of beta-turn types in proteins using evolutionary information.
Bioinformatics (Oxford, England) 2004;20(16):2751-8.
2004: Issac Biju; Raghava Gajendra Pal Singh
EGPred: prediction of eukaryotic genes using ab initio methods after combining with sequence similarity approaches.
Genome research 2004;14(9):1756-66.
2004: Bhasin Manoj; Raghava G P S
Prediction of CTL epitopes using QM, SVM and ANN techniques.
Vaccine 2004;22(23-24):3195-204.
2004: Bhasin Manoj; Raghava G P S
ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.
Nucleic acids research 2004;32(Web Server issue):W414-9.
2004: Bhasin Manoj; Raghava G P S
GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors.
Nucleic acids research 2004;32(Web Server issue):W383-9.
2004: Natt Navjyot K; Kaur Harpreet; Raghava G P S
Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.
Proteins 2004;56(1):11-8.
2004: Sharma Deepak; Issac Biju; Raghava G P S; Ramaswamy R
Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation.
Bioinformatics (Oxford, England) 2004;20(9):1405-12.
2004: Bhasin Manoj; Raghava Gajendra P S
Classification of nuclear receptors based on amino acid composition and dipeptide composition.
The Journal of biological chemistry 2004;279(22):23262-6.
2004: Kaur Harpreet; Raghava G P S
Role of evolutionary information in prediction of aromatic-backbone NH interactions in proteins.
FEBS letters 2004;564(1-2):47-57.
2004: Kaur Harpreet; Raghava G P S
Prediction of alpha-turns in proteins using PSI-BLAST profiles and secondary structure information.
Proteins 2004;55(1):83-90.
2004: Bhasin Manoj; Raghava G P S
Analysis and prediction of affinity of TAP binding peptides using cascade SVM.
Protein science : a publication of the Protein Society 2004;13(3):596-607.
2004: Bhasin Manoj; Raghava G P S
SVM based method for predicting HLA-DRB1*0401 binding peptides in an antigen sequence.
Bioinformatics (Oxford, England) 2004;20(3):421-3.
2003: Kaur Harpreet; Raghava G P S
BTEVAL: a server for evaluation of beta-turn prediction methods.
Journal of bioinformatics and computational biology 2003;1(3):495-504.
2003: Raghava G P S; Searle Stephen M J; Audley Patrick C; Barber Jonathan D; Barton Geoffrey J
OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
BMC bioinformatics 2003;4():47.
2003: Sarin Jyoti; Raghava Gajendra P S; Chakraborti Pradip K
Intrinsic contributions of polar amino acid residues toward thermal stability of an ABC-ATPase of mesophilic origin.
Protein science : a publication of the Protein Society 2003;12(9):2118-20.
2003: Bhasin Manoj; Raghava G P S
Prediction of promiscuous and high-affinity mutated MHC binders.
Hybridoma and hybridomics 2003;22(4):229-34.
2003: Singh Harpreet; Raghava G P S
ProPred1: prediction of promiscuous MHC Class-I binding sites.
Bioinformatics (Oxford, England) 2003;19(8):1009-14.
2003: Kaur Harpreet; Raghava G P S
A neural-network based method for prediction of gamma-turns in proteins from multiple sequence alignment.
Protein science : a publication of the Protein Society 2003;12(5):923-9.
2003: Bhasin Manoj; Singh Harpreet; Raghava G P S
MHCBN: a comprehensive database of MHC binding and non-binding peptides.
Bioinformatics (Oxford, England) 2003;19(5):665-6.
2003: Kaur Harpreet; Raghava Gajendra Pal Singh
Prediction of beta-turns in proteins from multiple alignment using neural network.
Protein science : a publication of the Protein Society 2003;12(3):627-34.
2002: Kaur Harpreet; Raghava G P S
An evaluation of beta-turn prediction methods.
Bioinformatics (Oxford, England) 2002;18(11):1508-14.
2002: Issac Biju; Raghava G P S
GWFASTA: server for FASTA search in eukaryotic and microbial genomes.
BioTechniques 2002;33(3):548-50, 552, 554-6.
2002: Kaur Harpreet; Raghava G P S
BetaTPred: prediction of beta-TURNS in a protein using statistical algorithms.
Bioinformatics (Oxford, England) 2002;18(3):498-9.
2002: Issac Biju; Singh Harpreet; Kaur Harpreet; Raghava G P S
Locating probable genes using Fourier transform approach.
Bioinformatics (Oxford, England) 2002;18(1):196-7.
2001: Singh H; Raghava G P
ProPred: prediction of HLA-DR binding sites.
Bioinformatics (Oxford, England) 2001;17(12):1236-7.
2000: Raghava G P; Solanki R J; Soni V; Agrawal P
Fingerprinting method for phylogenetic classification and identification of microorganisms based on variation in 16S rRNA gene sequences.
BioTechniques 2000;29(1):108-12, 114-6.
1997: Nihalani D; Raghava G P; Sahni G
Mapping of the plasminogen binding site of streptokinase with short synthetic peptides.
Protein science : a publication of the Protein Society 1997;6(6):1284-92.
1995: Raghava G P
DNAOPT: a computer program to aid optimization of DNA gel electrophoresis and SDS-PAGE.
BioTechniques 1995;18(2):274-8, 280.
1994: Raghava G P; Goel A; Singh A M; Varshney G C
A simple microassay for computing the hemolytic potency of drugs.
BioTechniques 1994;17(6):1148-53.
1994: Raghava G P
Improved estimation of DNA fragment length from gel electrophoresis data using a graphical method.
BioTechniques 1994;17(1):100-4.
1994: Raghava G P; Sahni G
GMAP: a multi-purpose computer program to aid synthetic gene design, cassette mutagenesis and the introduction of potential restriction sites into DNA sequences.
BioTechniques 1994;16(6):1116-23.
1994: Raghava G P; Agrewala J N
Method for determining the affinity of monoclonal antibody using non-competitive ELISA: a computer program.
Journal of immunoassay 1994;15(2):115-28.
1993: Agrewala J N; Raghava G P; Mishra G C
Measurement and computation of murine interleukin-4 and interferon-gamma by exploiting the unique abilities of these lymphokines to induce the secretion of IgG1 and IgG2a.
Journal of immunoassay 1993;14(1-2):83-97.
1992: Raghava G P; Joshi A K; Agrewala J N
Calculation of antibody and antigen concentrations from ELISA data using a graphical method.
Journal of immunological methods 1992;153(1-2):263-4.

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