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Tom James

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Co-Publications
Name
33
Litt, Lawrence
20
Ulyanov, Nikolai
17
Weinstein, Philip
12
Schmitz, U
12
Du, Zhihua
11
Chan, Pak
11
Vigneron, Daniel
10
Mujeeb, Anwer
9
Prusiner, Stanley
9
Hricak, Hedvig
8
Espanol, MT
8
Parmley, William
8
Tanagho, Emil
8
Cohen, Fred
7
Sievers, Richard

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Publications

TOP 3
Lang P Therese; Brozell Scott R; Mukherjee Sudipto; Pettersen Eric F; Meng Elaine C; Thomas Veena; Rizzo Robert C; Case David A; James Thomas L; Kuntz Irwin D
DOCK 6: combining techniques to model RNA-small molecule complexes.
Liu J; Segal M; Yoo S; Yang G-Y; Kelly M; James T L; Litt L
Antioxidant effect of ethyl pyruvate in respiring neonatal cerebrocortical slices after H(2)O(2) stress.
Du Zhihua; Fenn Sebastian; Tjhen Richard; James Thomas L
Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms.

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All Publications

2009: Lang P Therese; Brozell Scott R; Mukherjee Sudipto; Pettersen Eric F; Meng Elaine C; Thomas Veena; Rizzo Robert C; Case David A; James Thomas L; Kuntz Irwin D
DOCK 6: combining techniques to model RNA-small molecule complexes.
RNA (New York, N.Y.) 2009;15(6):1219-30.
2009: Liu J; Segal M; Yoo S; Yang G-Y; Kelly M; James T L; Litt L
Antioxidant effect of ethyl pyruvate in respiring neonatal cerebrocortical slices after H(2)O(2) stress.
Neurochemistry international 2009;54(2):106-10.
2008: Du Zhihua; Fenn Sebastian; Tjhen Richard; James Thomas L
Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms.
The Journal of biological chemistry 2008;283(42):28757-66.
2008: Du Zhihua; Lee John K; Tjhen Richard; Stroud Robert M; James Thomas L
Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(7):2391-6.
2007: Zeng Jianying; Liu Jia; Yang Guo-Yuan; Kelly Mark J S; James Thomas L; Litt Lawrence
Exogenous ethyl pyruvate versus pyruvate during metabolic recovery after oxidative stress in neonatal rat cerebrocortical slices.
Anesthesiology 2007;107(4):630-40.
2007: Du Zhihua; Lee John K; Fenn Sebastian; Tjhen Richard; Stroud Robert M; James Thomas L
X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
RNA (New York, N.Y.) 2007;13(7):1043-51.
2007: Du Zhihau; Fenn Sebastian; James Thomas L
Resonance assignment of the first and second KH (hnRNP-K homology) domains of human poly(C)-binding protein-2 (PCBP2).
Journal of biomolecular NMR 2007;38(2):197.
2007: Zeng Jianying; Yang Guo-Yuan; Ying Weihai; Kelly Mark; Hirai Kiyoshi; James Thomas L; Swanson Raymond A; Litt Lawrence
Pyruvate improves recovery after PARP-1-associated energy failure induced by oxidative stress in neonatal rat cerebrocortical slices.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 2007;27(2):304-15.
2007: Ulyanov Nikolai B; Shefer Kinneret; James Thomas L; Tzfati Yehuda
Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates.
Nucleic acids research 2007;35(18):6150-60.
2007: Fenn Sebastian; Du Zhihua; Lee John K; Tjhen Richard; Stroud Robert M; James Thomas L
Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution.
Nucleic acids research 2007;35(8):2651-60.
2007: Mujeeb Anwer; Ulyanov Nikolai B; Georgantis Stefanos; Smirnov Ivan; Chung Janet; Parslow Tristram G; James Thomas L
Nucleocapsid protein-mediated maturation of dimer initiation complex of full-length SL1 stemloop of HIV-1: sequence effects and mechanism of RNA refolding.
Nucleic acids research 2007;35(6):2026-34.
2006: Mayer Moriz; Lang P Therese; Gerber Sabina; Madrid Peter B; Pinto Irene Gómez; Guy R Kiplin; James Thomas L
Synthesis and testing of a focused phenothiazine library for binding to HIV-1 TAR RNA.
Chemistry & biology 2006;13(9):993-1000.
2006: Ulyanov Nikolai B; Mujeeb Anwer; Du Zhihua; Tonelli Marco; Parslow Tristram G; James Thomas L
NMR structure of the full-length linear dimer of stem-loop-1 RNA in the HIV-1 dimer initiation site.
The Journal of biological chemistry 2006;281(23):16168-77.
2005: Du Zhihua; Lee John K; Tjhen Richard; Li Shang; Pan Hu; Stroud Robert M; James Thomas L
Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 A.
The Journal of biological chemistry 2005;280(46):38823-30.
2005: Mayer Moriz; James Thomas L
Discovery of ligands by a combination of computational and NMR-based screening: RNA as an example target.
Methods in enzymology 2005;394():571-87.
2004: Lapidot Aviva; Vijayabaskar Veerappan; Litovchick Alexander; Yu Jingua; James Thomas L
Structure-activity relationships of aminoglycoside-arginine conjugates that bind HIV-1 RNAs as determined by fluorescence and NMR spectroscopy.
FEBS letters 2004;577(3):415-21.
2004: Du Zhihua; Yu Jinghua; Chen Yihong; Andino Raul; James Thomas L
Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2.
The Journal of biological chemistry 2004;279(46):48126-34.
2004: Du Zhihua; Yu Jinghua; Ulyanov Nikolai B; Andino Raul; James Thomas L
Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses.
Biochemistry 2004;43(38):11959-72.
2004: Zeng Jianying; Hirai Kiyoshi; Yang Guo-Yuan; Ying Weihai; Swanson Raymond A; Kelly Mark; Mayer Moriz; James Thomas L; Litt Lawrence
Using 31P NMR spectroscopy at 14.1 Tesla to investigate PARP-1 associated energy failure and metabolic rescue in cerebrocortical slices.
Journal of bioenergetics and biomembranes 2004;36(4):415-9.
2004: Du Zhihua; Ulyanov Nikolai B; Yu Jinghua; Andino Raul; James Thomas L
NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA.
Biochemistry 2004;43(19):5757-71.
2004: Hirai Kiyoshi; Hayashi Takeshi; Chan Pak H; Zeng Jianying; Yang Guo-Yuan; Basus Vladimir J; James Thomas L; Litt Lawrence
PI3K inhibition in neonatal rat brain slices during and after hypoxia reduces phospho-Akt and increases cytosolic cytochrome c and apoptosis.
Brain research. Molecular brain research 2004;124(1):51-61.
2004: Kuwata Kazuo; Kamatari Yuji O; Akasaka Kazuyuki; James Thomas L
Slow conformational dynamics in the hamster prion protein.
Biochemistry 2004;43(15):4439-46.
2004: Mayer Moriz; James Thomas L
NMR-based characterization of phenothiazines as a RNA binding scaffold.
Journal of the American Chemical Society 2004;126(13):4453-60.
2003: Kuwata Kazuo; Matumoto Tomoharu; Cheng Hong; Nagayama Kuniaki; James Thomas L; Roder Heinrich
NMR-detected hydrogen exchange and molecular dynamics simulations provide structural insight into fibril formation of prion protein fragment 106-126.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(25):14790-5.
2003: Tonelli Marco; Ulyanov Nikolai B; Billeci Todd M; Karwowski Boleslaw; Guga Piotr; Stec Wojciech J; James Thomas L
Dynamic NMR structures of [Rp]- and [Sp]-phosphorothioated DNA-RNA hybrids: is flexibility required for RNase H recognition?
Biophysical journal 2003;85(4):2525-38.
2003: Du Zhihua; Yu Jinghua; Andino Raul; James Thomas L
Extending the family of UNCG-like tetraloop motifs: NMR structure of a CACG tetraloop from coxsackievirus B3.
Biochemistry 2003;42(15):4373-83.
2003: Litt Lawrence; Hirai Kiyoshi; Basus Vladimir J; James Thomas L
Temperature control of respiring rat brain slices during high field NMR spectroscopy.
Brain research. Brain research protocols 2003;10(3):191-8.
2003: Hirai K; Hayashi T; Chan P H; Basus V J; James T L; Litt L
Akt phosphorylation and cell survival after hypoxia-induced cytochrome c release in superfused respiring neonatal rat cerebrocortical slices.
Acta neurochirurgica. Supplement 2003;86():227-30.
2003: Litt L; Hirai K; Basus V J; James T L
NTP and PCr responses to hypoxia by hypothermic and normothermic respiring, superfused, neonatal rat cerebrocortical slices: an NMR spectroscopy study at 14.1 Tesla.
Acta neurochirurgica. Supplement 2003;86():71-4.
2002: Comolli Luis R; Smirnov Ivan; Xu Lifeng; Blackburn Elizabeth H; James Thomas L
A molecular switch underlies a human telomerase disease.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(26):16998-7003.
2002: Mayer Moriz; James Thomas L
Detecting ligand binding to a small RNA target via saturation transfer difference NMR experiments in D(2)O and H(2)O.
Journal of the American Chemical Society 2002;124(45):13376-7.
2002: Hirai Kiyoshi; Sugawara Taku; Chan Pak H; Basus Vladimir J; James Thomas L; Litt Lawrence
Cytochrome c associated apoptosis during ATP recovery after hypoxia in neonatal rat cerebrocortical slices.
Journal of neurochemistry 2002;83(2):309-19.
2002: Comolli Luis R; Ulyanov Nikolai B; Soto Ana Maria; Marky Luis A; James Thomas L; Gmeiner William H
NMR structure of the 3' stem-loop from human U4 snRNA.
Nucleic acids research 2002;30(20):4371-9.
2002: Kuwata Kazuo; Li Hua; Yamada Hiroaki; Legname Giuseppe; Prusiner Stanley B; Akasaka Kazuyuki; James Thomas L
Locally disordered conformer of the hamster prion protein: a crucial intermediate to PrPSc?
Biochemistry 2002;41(41):12277-83.
2002: Macdonald Jeffrey M; Schmidlin Olga; James Thomas L
In vivo monitoring of hepatic glutathione in anesthetized rats by 13C NMR.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 2002;48(3):430-9.
2002: Du Zhihua; Lind Kenneth E; James Thomas L
Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening.
Chemistry & biology 2002;9(6):707-12.
2002: Ulyanov Nikolai B; Bauer William R; James Thomas L
High-resolution NMR structure of an AT-rich DNA sequence.
Journal of biomolecular NMR 2002;22(3):265-80.
2002: Lind Kenneth E; Du Zhihua; Fujinaga Koh; Peterlin B Matija; James Thomas L
Structure-based computational database screening, in vitro assay, and NMR assessment of compounds that target TAR RNA.
Chemistry & biology 2002;9(2):185-93.
2002: Konerding David; James Thomas L; Trump Eric; Soto Ana Maria; Marky Luis A; Gmeiner William H
NMR structure of a gemcitabine-substituted model Okazaki fragment.
Biochemistry 2002;41(3):839-46.
2001: Tonelli M; Peters R J; James T L; Agard D A
The solution structure of the viral binding domain of Tva, the cellular receptor for subgroup A avian leukosis and sarcoma virus.
FEBS letters 2001;509(2):161-8.
2001: Kojima C; Ulyanov N B; Kainosho M; James T L
Slow motion in the CAA*TTG sequence of a DNA decamer duplex studied by NMR.
Biochemistry 2001;40(24):7239-46.
2001: James T L
NMR determination of oligonucleotide structure.
Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.] 2001;Chapter 7():Unit 7.2.
2001: Song M; Shao H; Mujeeb A; James T L; Miller W L
Molten-globule structure and membrane binding of the N-terminal protease-resistant domain (63-193) of the steroidogenic acute regulatory protein (StAR).
The Biochemical journal 2001;356(Pt 1):151-8.
2000: Filikov A V; Mohan V; Vickers T A; Griffey R H; Cook P D; Abagyan R A; James T L
Identification of ligands for RNA targets via structure-based virtual screening: HIV-1 TAR.
Journal of computer-aided molecular design 2000;14(6):593-610.
2000: Görler A; Ulyanov N B; James T L
Determination of the populations and structures of multiple conformers in an ensemble from NMR data: multiple-copy refinement of nucleic acid structures using floating weights.
Journal of biomolecular NMR 2000;16(2):147-64.
2000: Serkova N; Litt L; Leibfritz D; Hausen B; Morris R E; James T L; Benet L Z; Christians U
The novel immunosuppressant SDZ-RAD protects rat brain slices from cyclosporine-induced reduction of high-energy phosphates.
British journal of pharmacology 2000;129(3):485-92.
1999: Schmitz U; Behrens S; Freymann D M; Keenan R J; Lukavsky P; Walter P; James T L
Structure of the phylogenetically most conserved domain of SRP RNA.
RNA (New York, N.Y.) 1999;5(11):1419-29.
1999: Mujeeb A; Parslow T G; Zarrinpar A; Das C; James T L
NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.
FEBS letters 1999;458(3):387-92.
1999: Schmitz U; James T L; Lukavsky P; Walter P
Structure of the most conserved internal loop in SRP RNA.
Nature structural biology 1999;6(7):634-8.
1999: Litt L; Espanol M T; Hasegawa K; Chang L H; Gregory G A; James T L; Beal M F; Chan P H
NOS inhibitors decrease hypoxia-induced ATP reductions in respiring cerebrocortical slices.
Anesthesiology 1999;90(5):1392-401.
1999: Serkova N; Litt L; James T L; Sadée W; Leibfritz D; Benet L Z; Christians U
Evaluation of individual and combined neurotoxicity of the immunosuppressants cyclosporine and sirolimus by in vitro multinuclear NMR spectroscopy.
The Journal of pharmacology and experimental therapeutics 1999;289(2):800-6.
1999: Liu H; Farr-Jones S; Ulyanov N B; Llinas M; Marqusee S; Groth D; Cohen F E; Prusiner S B; James T L
Solution structure of Syrian hamster prion protein rPrP(90-231).
Biochemistry 1999;38(17):5362-77.
1999: Konerding D E; Cheatham T E; Kollman P A; James T L
Restrained molecular dynamics of solvated duplex DNA using the particle mesh Ewald method.
Journal of biomolecular NMR 1999;13(2):119-31.
1999: Kojima C; Ono A; Kainosho M; James T L
Quantitative measurement of transverse and longitudinal cross-correlation between 13C-1H dipolar interaction and 13C chemical shift anisotropy: application to a 13C-labeled DNA duplex.
Journal of magnetic resonance (San Diego, Calif. : 1997) 1999;136(2):169-75.
1999: Gmeiner W H; Konerding D; James T L
Effect of cytarabine on the NMR structure of a model okazaki fragment from the SV40 genome.
Biochemistry 1999;38(4):1166-75.
1999: Furrer P; Billeci T M; Donati A; Kojima C; Karwowski B; Sierzchala A; Stec W; James T L
Structural effect of complete [Rp]-phosphorothioate and phosphorodithioate substitutions in the DNA strand of a model antisense inhibitor-target RNA complex.
Journal of molecular biology 1999;285(4):1609-22.
1998: Kojima C; Ono A; Kainosho M; James T L
DNA duplex dynamics: NMR relaxation studies of a decamer with uniformly 13C-labeled purine nucleotides.
Journal of magnetic resonance (San Diego, Calif. : 1997) 1998;135(2):310-33.
1998: Schmitz U; Donati A; James T L; Ulyanov N B; Yao L
Small structural ensembles for a 17-nucleotide mimic of the tRNA T psi C-loop via fitting dipolar relaxation rates with the quadratic programming algorithm.
Biopolymers 1998;46(5):329-42.
1998: Ulyanov N B; Ivanov V I; Minyat E E; Khomyakova E B; Petrova M V; Lesiak K; James T L
A pseudosquare knot structure of DNA in solution.
Biochemistry 1998;37(37):12715-26.
1998: Baldwin M A; James T L; Cohen F E; Prusiner S B
The three-dimensional structure of prion protein: implications for prion disease.
Biochemical Society transactions 1998;26(3):481-6.
1998: Tonelli M; Ragg E; Bianucci A M; Lesiak K; James T L
Nuclear magnetic resonance structure of d(GCATATGATAG). d(CTATCATATGC): a consensus sequence for promoters recognized by sigma K RNA polymerase.
Biochemistry 1998;37(34):11745-61.
1998: Tonelli M; James T L
Insights into the dynamic nature of DNA duplex structure via analysis of nuclear Overhauser effect intensities.
Biochemistry 1998;37(33):11478-87.
1998: Mujeeb A; Clever J L; Billeci T M; James T L; Parslow T G
Structure of the dimer initiation complex of HIV-1 genomic RNA.
Nature structural biology 1998;5(6):432-6.
1998: Filikov A V; James T L
Structure-based design of ligands for protein basic domains: application to the HIV-1 Tat protein.
Journal of computer-aided molecular design 1998;12(3):229-40.
1998: Macdonald J M; Grillo M; Schmidlin O; Tajiri D T; James T L
NMR spectroscopy and MRI investigation of a potential bioartificial liver.
NMR in biomedicine 1998;11(2):55-66.
1998: Espanol M T; Litt L; Hasegawa K; Chang L H; Macdonald J M; Gregory G; James T L; Chan P H
Fructose-1,6-bisphosphate preserves adenosine triphosphate but not intracellular pH during hypoxia in respiring neonatal rat brain slices.
Anesthesiology 1998;88(2):461-72.
1997: Donne D G; Viles J H; Groth D; Mehlhorn I; James T L; Cohen F E; Prusiner S B; Wright P E; Dyson H J
Structure of the recombinant full-length hamster prion protein PrP(29-231): the N terminus is highly flexible.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(25):13452-7.
1997: Peretz D; Williamson R A; Matsunaga Y; Serban H; Pinilla C; Bastidas R B; Rozenshteyn R; James T L; Houghten R A; Cohen F E; Prusiner S B; Burton D R
A conformational transition at the N terminus of the prion protein features in formation of the scrapie isoform.
Journal of molecular biology 1997;273(3):614-22.
1997: Kuwata K; Liu H; Schleich T; James T L
Rotational correlation times of internuclear vectors in a DNA duplex with G-A mismatch determined in aqueous solution by complete relaxation matrix analysis of off-resonance ROESY (O-ROESY) spectra.
Journal of magnetic resonance (San Diego, Calif. : 1997) 1997;128(1):70-81.
1997: James T L; Liu H; Ulyanov N B; Farr-Jones S; Zhang H; Donne D G; Kaneko K; Groth D; Mehlhorn I; Prusiner S B; Cohen F E
Solution structure of a 142-residue recombinant prion protein corresponding to the infectious fragment of the scrapie isoform.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(19):10086-91.
1997: Kaneko K; Zulianello L; Scott M; Cooper C M; Wallace A C; James T L; Cohen F E; Prusiner S B
Evidence for protein X binding to a discontinuous epitope on the cellular prion protein during scrapie prion propagation.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(19):10069-74.
1997: Sorensen M D; Bjorn S; Norris K; Olsen O; Petersen L; James T L; Led J J
Solution structure and backbone dynamics of the human alpha3-chain type VI collagen C-terminal Kunitz domain,.
Biochemistry 1997;36(34):10439-50.
1997: Yao L J; James T L; Kealey J T; Santi D V; Schmitz U
The dynamic NMR structure of the T psi C-loop: implications for the specificity of tRNA methylation.
Journal of biomolecular NMR 1997;9(3):229-44.
1997: Zhang H; Stockel J; Mehlhorn I; Groth D; Baldwin M A; Prusiner S B; James T L; Cohen F E
Physical studies of conformational plasticity in a recombinant prion protein.
Biochemistry 1997;36(12):3543-53.
1997: Mujeeb A; Reynolds M A; James T L
High-resolution NMR of an antisense DNA x RNA hybrid containing alternating chirally pure Rp methylphosphonates in the DNA backbone.
Biochemistry 1997;36(9):2371-9.
1996: Schmitz U; Freymann D M; James T L; Keenan R J; Vinayak R; Walter P
NMR studies of the most conserved RNA domain of the mammalian signal recognition particle (SRP).
RNA (New York, N.Y.) 1996;2(12):1213-27.
1996: Liu H; Tonelli M; James T L
Correcting NOESY cross-peak intensities for partial relaxation effects enabling accurate distance information.
Journal of magnetic resonance. Series B 1996;111(1):85-9.
1996: Mujeeb A; Parslow T G; Yuan Y C; James T L
Aqueous solution structure of a hybrid lentiviral Tat peptide and a model of its interaction with HIV-1 TAR RNA.
Journal of biomolecular structure & dynamics 1996;13(4):649-60.
1996: Espanol M T; Litt L; Chang L H; James T L; Weinstein P R; Chan P H
Adult rat brain-slice preparation for nuclear magnetic resonance spectroscopy studies of hypoxia.
Anesthesiology 1996;84(1):201-10.
1995: Liu H; Spielmann H P; Ulyanov N B; Wemmer D E; James T L
Interproton distance bounds from 2D NOE intensities: effect of experimental noise and peak integration errors.
Journal of biomolecular NMR 1995;6(4):390-402.
1995: Zhang H; Kaneko K; Nguyen J T; Livshits T L; Baldwin M A; Cohen F E; James T L; Prusiner S B
Conformational transitions in peptides containing two putative alpha-helices of the prion protein.
Journal of molecular biology 1995;250(4):514-26.
1995: Liu H; Banville D L; Basus V J; James T L
Deriving accurate interproton distances from ROESY spectra with limited knowledge of scalar coupling constants via the CARNIVAL algorithm. An iterative complete-relaxation-matrix approach.
Journal of magnetic resonance. Series B 1995;107(1):51-9.
1995: González C; Stec W; Reynolds M A; James T L
Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraints.
Biochemistry 1995;34(15):4969-82.
1995: Ulyanov N B; Schmitz U; Kumar A; James T L
Probability assessment of conformational ensembles: sugar repuckering in a DNA duplex in solution.
Biophysical journal 1995;68(1):13-24.
1995: Ulyanov N B; James T L
Statistical analysis of DNA duplex structural features.
Methods in enzymology 1995;261():90-120.
1995: Schmitz U; James T L
How to generate accurate solution structures of double-helical nucleic acid fragments using nuclear magnetic resonance and restrained molecular dynamics.
Methods in enzymology 1995;261():3-44.
1994: Ulyanov N B; Bishop K D; Ivanov V I; James T L
Tertiary base pair interactions in slipped loop-DNA: an NMR and model building study.
Nucleic acids research 1994;22(20):4242-9.
1994: González C; Stec W; Kobylanska A; Hogrefe R I; Reynolds M; James T L
Structural study of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety by NMR: extraction of distance and torsion angle constraints and imino proton exchange rates.
Biochemistry 1994;33(37):11062-72.
1994: Mujeeb A; Bishop K; Peterlin B M; Turck C; Parslow T G; James T L
NMR structure of a biologically active peptide containing the RNA-binding domain of human immunodeficiency virus type 1 Tat.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(17):8248-52.
1994: Espanol M T; Litt L; Xu Y; Chang L H; James T L; Weinstein P R; Chan P H
19F NMR calcium changes, edema and histology in neonatal rat brain slices during glutamate toxicity.
Brain research 1994;647(1):172-6.
1994: Espanol M T; Xu Y; Litt L; Yang G Y; Chang L H; James T L; Weinstein P; Chan P H
Modulation of glutamate-induced intracellular energy failure in neonatal cerebral cortical slices by kynurenic acid, dizocilpine, and NBQX.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 1994;14(2):269-78.
1994: Kurhanewicz J; Char D H; Stauffer P; Quivey J M; James T L
31P magnetic resonance spectroscopy after combined hyperthermia and radiation.
Current eye research 1994;13(2):151-6.
1994: Bishop K D; Blocker F J; Egan W; James T L
Hepatitis B virus direct repeat sequence: imino proton exchange rates and distance and torsion angle restraints from NMR.
Biochemistry 1994;33(2):427-38.
1994: Weisz K; Shafer R H; Egan W; James T L
Solution structure of the octamer motif in immunoglobulin genes via restrained molecular dynamics calculations.
Biochemistry 1994;33(1):354-66.
1994: Imaizumi S; Chang L; Cohen Y; Chan P H; Weinstein P R; Yoshimoto T; James T L
Reduction of superoxide dismutase activity correlates with visualization of edema by T2-weighted MR imaging in focal ischemic rat brain.
Neurologia medico-chirurgica 1994;34(1):1-9.
1994: Espanol M T; Xu Y; Litt L; Chang L H; James T L; Weinstein P R; Chan P H
Modulation of edema by dizocilpine, kynurenate, and NBQX in respiring brain slices after exposure to glutamate.
Acta neurochirurgica. Supplementum 1994;60():58-61.
1994: James T L
Assessment of quality of derived macromolecular structures.
Methods in enzymology 1994;239():416-39.
1993: Mujeeb A; Kerwin S M; Kenyon G L; James T L
Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra.
Biochemistry 1993;32(49):13419-31.
1993: Schmitz U; Ulyanov N B; Kumar A; James T L
Molecular dynamics with weighted time-averaged restraints for a DNA octamer. Dynamic interpretation of nuclear magnetic resonance data.
Journal of molecular biology 1993;234(2):373-89.
1993: Ulyanov N B; Schmitz U; James T L
Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure.
Journal of biomolecular NMR 1993;3(5):547-68.
1993: Litt L; Xu Y; Cohen Y; James T L
Nonmagnetic hyperbaric chamber for in vivo NMR spectroscopy studies of small animals.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1993;29(6):812-6.
1993: Bretan P N; Vigneron D B; Hricak H; Price D C; Yen T S; Luo J A; Tanagho E A; James T L
Assessment of in situ renal transplant viability by 31P-MRS: experimental study in canines.
The American surgeon 1993;59(3):182-7.
1993: Shimizu H; Graham S H; Chang L H; Mintorovitch J; James T L; Faden A I; Weinstein P R
Relationship between extracellular neurotransmitter amino acids and energy metabolism during cerebral ischemia in rats monitored by microdialysis and in vivo magnetic resonance spectroscopy.
Brain research 1993;605(1):33-42.
1993: Macdonald J M; Kurhanewicz J; Dahiya R; Espanol M T; Chang L H; Goldberg B; James T L; Narayan P
Effect of glucose and confluency on phosphorus metabolites of perfused human prostatic adenocarcinoma cells as determined by 31P MRS.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1993;29(2):244-8.
1993: Kurhanewicz J; Dahiya R; Macdonald J M; Chang L H; James T L; Narayan P
Citrate alterations in primary and metastatic human prostatic adenocarcinomas: 1H magnetic resonance spectroscopy and biochemical study.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1993;29(2):149-57.
1992: Mills P A; Rashid A; James T L
Monte Carlo calculations of ion distributions surrounding the oligonucleotide d(ATATATATAT)2 in the B, A, and wrinkled D conformations.
Biopolymers 1992;32(11):1491-501.
1992: Espanol M T; Litt L; Yang G Y; Chang L H; Chan P H; James T L; Weinstein P R
Tolerance of low intracellular pH during hypercapnia by rat cortical brain slices: A 31P/1H NMR study.
Journal of neurochemistry 1992;59(5):1820-8.
1992: Chang L H; Shimizu H; Abiko H; Swanson R A; Faden A I; James T L; Weinstein P R
Effect of dichloroacetate on recovery of brain lactate, phosphorus energy metabolites, and glutamate during reperfusion after complete cerebral ischemia in rats.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 1992;12(6):1030-8.
1992: Mujeeb A; Kerwin S M; Egan W; Kenyon G L; James T L
A potential gene target in HIV-1: rationale, selection of a conserved sequence, and determination of NMR distance and torsion angle constraints.
Biochemistry 1992;31(39):9325-38.
1992: Schmitz U; Sethson I; Egan W M; James T L
Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting.
Journal of molecular biology 1992;227(2):510-31.
1992: Stolarski R; Egan W; James T L
Solution structure of the EcoRI DNA octamer containing 5-fluorouracil via restrained molecular dynamics using distance and torsion angle constraints extracted from NMR spectral simulations.
Biochemistry 1992;31(31):7027-42.
1992: Weisz K; Shafer R H; Egan W; James T L
The octamer motif in immunoglobulin genes: extraction of structural constraints from two-dimensional NMR studies.
Biochemistry 1992;31(33):7477-87.
1992: Kurhanewicz J; Dahiya R; Macdonald J M; Jajodia P; Chang L H; James T L; Narayan P
Phosphorus metabolite characterization of human prostatic adenocarcinoma in a nude mouse model by 31P magnetic resonance spectroscopy and high pressure liquid chromatography.
NMR in biomedicine 1992;5(4):185-92.
1992: Wendland M F; Iyer S B; Fu K K; Lam K N; James T L
Correlations between in vivo 31P MRS measurements, tumor size, cell survival, and hypoxic fraction in the murine EMT6 tumor.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1992;25(2):217-32.
1992: Widmer H; Abiko H; Faden A I; James T L; Weinstein P R
Effects of hyperglycemia on the time course of changes in energy metabolism and pH during global cerebral ischemia and reperfusion in rats: correlation of 1H and 31P NMR spectroscopy with fatty acid and excitatory amino acid levels.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 1992;12(3):456-68.
1992: Hu S H; Weisz K; James T L; Shafer R H
H-NMR studies on d(GCTTAAGC)2 and its complex with berenil.
European journal of biochemistry / FEBS 1992;204(1):31-8.
1991: Kurhanewicz J; Thomas A; Jajodia P; Weiner M W; James T L; Vigneron D B; Narayan P
31P spectroscopy of the human prostate gland in vivo using a transrectal probe.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1991;22(2):404-13.
1991: Xu Y; Cohen Y; Litt L; Chang L H; James T L
Tolerance of low cerebral intracellular pH in rats during hyperbaric hypercapnia.
Stroke; a journal of cerebral circulation 1991;22(10):1303-8.
1991: Schmitz U; Pearlman D A; James T L
Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments.
Journal of molecular biology 1991;221(1):271-92.
1991: Winguth S; Kurhanewicz J; Wang M L; Quivey J M; James T L; Char D H
31P magnetic resonance spectroscopy (MRS) of experimental orbital myositis.
Investigative ophthalmology & visual science 1991;32(8):2417-22.
1991: Narayan P; Jajodia P; Kurhanewicz J; Thomas A; MacDonald J; Hubesch B; Hedgcock M; Anderson C M; James T L; Tanagho E A
Characterization of prostate cancer, benign prostatic hyperplasia and normal prostates using transrectal 31phosphorus magnetic resonance spectroscopy: a preliminary report.
The Journal of urology 1991;146(1):66-74.
1991: Kerwood D J; Zon G; James T L
Structure determination of [d(ATATATAUAT)]2 via two-dimensional NOE spectroscopy and molecular dynamics calculations.
European journal of biochemistry / FEBS 1991;197(3):583-95.
1991: Thomas P D; Basus V J; James T L
Protein solution structure determination using distances from two-dimensional nuclear Overhauser effect experiments: effect of approximations on the accuracy of derived structures.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(4):1237-41.
1991: Cohen Y; Sanada T; Pitts L H; Chang L H; Nishimura M C; Weinstein P R; Litt L; James T L
Surface coil spectroscopic imaging: time and spatial evolution of lactate production following fluid percussion brain injury.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1991;17(1):225-36.
1991: Chang L H; Cohen Y; Weinstein P R; Chileuitt L; James T L
Interleaved 1H and 31P spectroscopic imaging for studying regional brain injury.
Magnetic resonance imaging 1991;9(2):223-7.
1991: James T L; Basus V J
Generation of high-resolution protein structures in solution from multidimensional NMR.
Annual review of physical chemistry 1991;42():501-42.
1990: Gochin M; James T L
Solution structure studies of d(AC)4.d(GT)4 via restrained molecular dynamics simulations with NMR constraints derived from two-dimensional NOE and double-quantum-filtered COSY experiments.
Biochemistry 1990;29(51):11172-80.
1990: Gochin M; Zon G; James T L
Two-dimensional COSY and two-dimensional NOE spectroscopy of d(AC)4.d(GT)4: extraction of structural constraints.
Biochemistry 1990;29(51):11161-71.
1990: Faden A I; Shirane R; Chang L H; James T L; Lemke M; Weinstein P R
Opiate-receptor antagonist improves metabolic recovery and limits neurochemical alterations associated with reperfusion after global brain ischemia in rats.
The Journal of pharmacology and experimental therapeutics 1990;255(2):451-8.
1990: Lockhart S H; Cohen Y; Yasuda N; Kim F; Litt L; Eger E I; Chang L H; James T
Absence of abundant binding sites for anesthetics in rabbit brain: an in vivo NMR study.
Anesthesiology 1990;73(3):455-60.
1990: Fu K K; Wendland M F; Iyer S B; Lam K N; Engeseth H; James T L
Correlations between in vivo 31P NMR spectroscopy measurements, tumor size, hypoxic fraction and cell survival after radiotherapy.
International journal of radiation oncology, biology, physics 1990;18(6):1341-50.
1990: Schmitz U; Zon G; James T L
Deoxyribose conformation in [d(GTATATAC)]2: evaluation of sugar pucker by simulation of double-quantum-filtered COSY cross-peaks.
Biochemistry 1990;29(9):2357-68.
1990: Cohen Y; Chang L H; Litt L; Kim F; Severinghaus J W; Weinstein P R; Davis R L; Germano I; James T L
Stability of brain intracellular lactate and 31P-metabolite levels at reduced intracellular pH during prolonged hypercapnia in rats.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 1990;10(2):277-84.
1990: Chang L H; Shirane R; Weinstein P R; James T L
Cerebral metabolite dynamics during temporary complete ischemia in rats monitored by time-shared 1H and 31P NMR spectroscopy.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1990;13(1):6-13.
1990: James T L; Borgias B A; Bianucci A M; Zhou N
Determination of DNA and protein structures in solution via complete relaxation matrix analysis of 2D NOE spectra.
Basic life sciences 1990;56():135-54.
1989: Tzika A A; Vigneron D B; Hricak H; Moseley M E; James T L; Kogan B A
P-31 MR spectroscopy in assessing testicular torsion: rat model.
Radiology 1989;172(3):753-7.
1989: Vigneron D B; Hricak H; James T L; Jajodia P B; Nunes L; Narayan P
Androgen sensitivity of rat prostate carcinoma studied by 31P NMR spectroscopy, 1H MR imaging, and 23Na MR imaging.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1989;11(2):152-60.
1989: Narayan P; Vigneron D B; Jajodia P; Anderson C M; Hedgcock M W; Tanagho E A; James T L
Transrectal probe for 1H MRI and 31P MR spectroscopy of the prostate gland.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1989;11(2):209-20.
1989: Zhou N; James T L; Shafer R H
Binding of actinomycin D to [d(ATCGAT)]2: NMR evidence of multiple complexes.
Biochemistry 1989;28(12):5231-9.
1989: Watters T; Wikman-Coffelt J; Wu S; James T L; Sievers R; Parmley W W
Effects of perfusion pressure on energy and work of isolated rat hearts.
Hypertension 1989;13(5):480-8.
1989: Bretan P N; Vigneron D B; McClure R D; Hricak H; Tom R A; Moseley M; Tanagho E A; James T L
Assessment of male infertility: correlation between results of semen analysis and phosphorus-31 magnetic resonance spectroscopy.
Urology 1989;33(2):116-9.
1989: Borgias B A; James T L
Two-dimensional nuclear Overhauser effect: complete relaxation matrix analysis.
Methods in enzymology 1989;176():169-83.
1988: Delbarre A; Brown S C; James T L; Shafer R H
Spectrophotometric and NMR analysis of the interaction of fluorinated mono- and bifunctional intercalators with DNA, poly(dA-dT), and poly(dG-dC).
Biopolymers 1988;27(12):1953-75.
1988: Vigneron D B; Tzika A A; Hricak H; Price D C; Bretan P; Aboseif S; Müller S; James T L
Complete and partial ureteral obstruction: evaluation of renal effects with P-31 MR spectroscopy and Tc-DMSA scintigraphy.
Radiology 1988;168(3):645-50.
1988: Zhou N; Manogaran S; Zon G; James T L
Deoxyribose ring conformation of [d(GGTATACC)]2: an analysis of vicinal proton-proton coupling constants from two-dimensional proton nuclear magnetic resonance.
Biochemistry 1988;27(16):6013-20.
1988: Wikman-Coffelt J; Wu S T; Watters T; James T L; Parmley W W; Mason D T
Biochemical regulation of developed intraventricular systolic pressure.
American heart journal 1988;115(4):876-91.
1988: Camacho S A; Wikman-Coffelt J; Wu S T; Watters T A; Botvinick E H; Sievers R; James T L; Jasmin G; Parmley W W
Improvement in myocardial performance without a decrease in high-energy phosphate metabolites after isoproterenol in Syrian cardiomyopathic hamsters.
Circulation 1988;77(3):712-9.
1988: Camacho S A; Parmley W W; James T L; Abe H; Wu S T; Botvinick E H; Watters T A; Schiller N; Sievers R; Wikman-Coffelt J
Substrate regulation of the nucleotide pool during regional ischaemia and reperfusion in an isolated rat heart preparation: a phosphorus-31 magnetic resonance spectroscopy analysis.
Cardiovascular research 1988;22(3):193-203.
1988: Ishige N; Pitts L H; Berry I; Nishimura M C; James T L
The effects of hypovolemic hypotension on high-energy phosphate metabolism of traumatized brain in rats.
Journal of neurosurgery 1988;68(1):129-36.
1988: Markiewicz W; Wu S S; Sievers R; Parmley W W; Watters T A; James T L; Higgins C B; Wikman-Coffelt J
Beneficial effects of verapamil during metabolic acidosis in isolated perfused rat hearts.
Cardiovascular drugs and therapy / sponsored by the International Society of Cardiovascular Pharmacotherapy 1988;1(5):493-502.
1987: Zhou N; Bianucci A M; Pattabiraman N; James T L
Solution structure of [d(GGTATACC)]2: wrinkled D structure of the TATA moiety.
Biochemistry 1987;26(24):7905-13.
1987: Sessler D; Mills P; Gregory G; Litt L; James T
Effects of bicarbonate on arterial and brain intracellular pH in neonatal rabbits recovering from hypoxic lactic acidosis.
The Journal of pediatrics 1987;111(6 Pt 1):817-23.
1987: Watters T A; Wendland M F; Parmley W W; James T L; Botvinick E H; Wu S T; Sievers R; Wikman-Coffelt J
Factors influencing myocardial response to metabolic acidosis in isolated rat hearts.
The American journal of physiology 1987;253(5 Pt 2):H1261-70.
1987: Richards T L; Keniry M A; Weinstein P R; Pereira B M; Andrews B T; Murphy E J; James T L
Measurement of lactate accumulation by in vivo proton NMR spectroscopy during global cerebral ischemia in rats.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1987;5(4):353-7.
1987: Mills P; Sessler D I; Moseley M; Chew W; Pereira B; James T L; Litt L
An in vivo 19F nuclear magnetic resonance study of isoflurane elimination from the rabbit brain.
Anesthesiology 1987;67(2):169-73.
1987: Litt L; González-Méndez R; James T L; Sessler D I; Mills P; Chew W; Moseley M; Pereira B; Severinghaus J W; Hamilton W K
An in vivo study of halothane uptake and elimination in the rat brain with fluorine nuclear magnetic resonance spectroscopy.
Anesthesiology 1987;67(2):161-8.
1987: Markiewicz W; Wu S; Sievers R; Parmley W W; Higgins C B; James T L; Jasmin G; Wikman-Coffelt J
Influence of heart rate on metabolic and hemodynamic parameters in the Syrian hamster cardiomyopathy.
American heart journal 1987;114(2):362-8.
1987: Ishige N; Pitts L H; Pogliani L; Hashimoto T; Nishimura M C; Bartkowski H M; James T L
Effect of hypoxia on traumatic brain injury in rats: Part 2. Changes in high energy phosphate metabolism.
Neurosurgery 1987;20(6):854-8.
1987: Chang L H; Pereira B M; Weinstein P R; Keniry M A; Murphy-Boesch J; Litt L; James T L
Comparison of lactate concentration determinations in ischemic and hypoxic rat brains by in vivo and in vitro 1H NMR spectroscopy.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1987;4(6):575-81.
1987: Bretan P N; Vigneron D B; Hricak H; McClure R D; Yen T S; Moseley M; Tanagho E A; James T L
Assessment of testicular metabolic integrity with P-31 MR spectroscopy.
Radiology 1987;162(3):867-71.
1987: Benz C; Hollander C; Keniry M; James T L; Mitchell M
Lactic dehydrogenase isozymes, 31P magnetic resonance spectroscopy, and in vitro antimitochondrial tumor toxicity with gossypol and rhodamine-123.
The Journal of clinical investigation 1987;79(2):517-23.
1987: Kass D A; Banville D L; Gooding C A; James T L
31P magnetic resonance spectroscopy of mesenteric ischemia.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1987;4(1):83-7.
1987: Bretan P N; Vigneron D B; Hricak H; Collins G M; Price D C; Tanagho E A; James T L
Assessment of clinical renal preservation by phosphorus-31 magnetic resonance spectroscopy.
The Journal of urology 1987;137(1):146-50.
1987: Chew W M; Moseley M E; Mills P A; Sessler D; González-Méndez R; James T L; Litt L
Spin-echo fluorine magnetic resonance imaging at 2 T: in vivo spatial distribution of halothane in the rabbit head.
Magnetic resonance imaging 1987;5(1):51-6.
1987: James T L; Chang L H; Chew W; Gonzalez-Mendez R; Litt L; Mills P; Moseley M; Pereira B; Sessler D I; Weinstein P R
In situ brain metabolism.
Annals of the New York Academy of Sciences 1987;508():64-80.
1986: Markiewicz W; Wu S S; Parmley W W; Higgins C B; Sievers R; James T L; Wikman-Coffelt J; Jasmin G
Evaluation of the hereditary Syrian hamster cardiomyopathy by 31P nuclear magnetic resonance spectroscopy: improvement after acute verapamil therapy.
Circulation research 1986;59(6):597-604.
1986: Berman E; Lis H; James T L
Binding of [1-13C]galactose-enriched hen ovalbumin to Erythrina cristagalli agglutinin as studied by 13C-NMR spectroscopy.
European journal of biochemistry / FEBS 1986;161(3):589-94.
1986: Bretan P N; Vigneron D B; Hricak H; Juenemann K P; Williams R D; Tanagho E A; James T L
Assessment of renal preservation by phosphorus-31 magnetic resonance spectroscopy: in vivo normothermic blood perfusion.
The Journal of urology 1986;136(6):1356-9.
1986: Margulis A R; James T L
Localized tissue MR spectroscopy.
AJR. American journal of roentgenology 1986;147(6):1327-8.
1986: Suzuki E; Pattabiraman N; Zon G; James T L
Solution structure of [d(A-T)5]2 via complete relaxation matrix analysis of two-dimensional nuclear Overhauser effect spectra and molecular mechanics calculations: evidence for a hydration tunnel.
Biochemistry 1986;25(22):6854-65.
1986: LaPlanche L A; James T L; Powell C; Wilson W D; Uznanski B; Stec W J; Summers M F; Zon G
Phosphorothioate-modified oligodeoxyribonucleotides. III. NMR and UV spectroscopic studies of the Rp-Rp, Sp-Sp, and Rp-Sp duplexes, [d(GGSAATTCC)]2, derived from diastereomeric O-ethyl phosphorothioates.
Nucleic acids research 1986;14(22):9081-93.
1986: Litt L; González-Méndez R; Weinstein P R; Severinghaus J W; Hamilton W K; Shuleshko J; Murphy-Boesch J; James T L
An in vivo 31P NMR study of cerebral hypoxic hypoxia in rats.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1986;3(4):619-25.
1986: Litt L; González-Méndez R; Severinghaus J W; Hamilton W K; Rampil I J; Shuleshko J; Murphy-Boesch J; James T L
Cerebral intracellular ADP concentrations during hypercarbia: an in vivo 31P nuclear magnetic resonance study in rats.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 1986;6(3):389-92.
1986: Bretan P N; Vigneron D B; James T L; Williams R D; Hricak H; Juenemann K P; Yen T S; Tanagho E A
Assessment of renal viability by phosphorus-31 magnetic resonance spectroscopy.
The Journal of urology 1986;135(4):866-71.
1986: Keniry M; Benz C; Shafer R H; James T L
Noninvasive spectroscopic analysis of fluoropyrimidine metabolism in cultured tumor cells.
Cancer research 1986;46(4 Pt 1):1754-8.
1986: Schmidt H C; Gooding C A; James T L
In vivo 31P-MR spectroscopy of the liver in the infant rabbit to study the effect of hypoxia on the phosphorus metabolites and intracellular pH.
Investigative radiology 1986;21(2):156-61.
1986: Koretsky A P; Wang S; Klein M P; James T L; Weiner M W
31P NMR saturation transfer measurements of phosphorus exchange reactions in rat heart and kidney in situ.
Biochemistry 1986;25(1):77-84.
1986: Schmidt H C; Gooding C A; James T L; Gonzalez-Mendez R; James J L
Comparison of in vivo 31P-MR spectra of the brain, liver, and kidney of adult and infant animals.
Pediatric radiology 1986;16(2):144-9.
1985: Litt L; González-Méndez R; Severinghaus J W; Hamilton W K; Shuleshko J; Murphy-Boesch J; James T L
Cerebral intracellular changes during supercarbia: an in vivo 31P nuclear magnetic resonance study in rats.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 1985;5(4):537-44.
1985: González-Méndez R; McNeill A; Gregory G A; Wall S D; Gooding C A; Litt L; James T L
Effects of hypoxic hypoxia on cerebral phosphate metabolites and pH in the anesthetized infant rabbit.
Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism 1985;5(4):512-6.
1985: Koretsky A P; Basus V J; James T L; Klein M P; Weiner M W
Detection of exchange reactions involving small metabolite pools using NMR magnetization transfer techniques: relevance to subcellular compartmentation of creatine kinase.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1985;2(6):586-94.
1985: Chew W M; Moseley M E; Nishimura M C; Hashimoto T; Pitts L H; James T L
A novel double-surface coil approach to phosphorus-31 spectroscopy: a study of hemispheric brain injury in the rat.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1985;2(6):567-75.
1985: Berman E; Brown S C; James T L; Shafer R H
NMR studies of chromomycin A3 interaction with DNA.
Biochemistry 1985;24(24):6887-93.
1985: Jamin N; James T L; Zon G
Two-dimensional nuclear Overhauser enhancement investigation of the solution structure and dynamics of the DNA octamer [d(GGTATACC)]2.
European journal of biochemistry / FEBS 1985;152(1):157-66.
1985: Brody A S; Sorette M P; Gooding C A; Listerud J; Clark M R; Mentzer W C; Brasch R C; James T L
AUR memorial Award. Induced alignment of flowing sickle erythrocytes in a magnetic field. A preliminary report.
Investigative radiology 1985;20(6):560-6.
1985: Shine N R; Bubienko E; James T L
Interactions of diastereomeric tripeptides of lysyl-5-fluorotryptophyllysine with DNA. 2. Optical, 19F NMR, and strand cleavage studies of apurinic DNA complexes.
Biochemistry 1985;24(16):4341-5.
1985: Shine N R; James T L
Interactions of diastereomeric tripeptides of lysyl-5-fluorotryptophyllysine with DNA. 1. Optical and 19F NMR studies of native DNA complexes.
Biochemistry 1985;24(16):4333-41.
1985: Broido M S; James T L; Zon G; Keepers J W
Investigation of the solution structure of a DNA octamer [d(GGAATTCC)]2 using two-dimensional nuclear Overhauser enhancement spectroscopy.
European journal of biochemistry / FEBS 1985;150(1):117-28.
1985: Wolff S; James T L; Young G B; Margulis A R; Bodycote J; Afzal V
Magnetic resonance imaging: absence of in vitro cytogenetic damage.
Radiology 1985;155(1):163-5.
1985: Stark D D; Moseley M E; Bacon B R; Moss A A; Goldberg H I; Bass N M; James T L
Magnetic resonance imaging and spectroscopy of hepatic iron overload.
Radiology 1985;154(1):137-42.
1985: Moseley M E; Chew W M; Nishimura M C; Richards T L; Murphy-Boesch J; Young G B; Marschner T M; Pitts L H; James T L
In vivo sodium-23 magnetic resonance surface coil imaging: observing experimental cerebral ischemia in the rat.
Magnetic resonance imaging 1985;3(4):383-7.
1985: James T L
Phosphorus-31 NMR as a probe for phosphoproteins.
CRC critical reviews in biochemistry 1985;18(1):1-30.
1984: Keepers J W; Schmidt P; James T L; Kollman P A
Molecular-mechanical studies of the mismatched base analogs of d(CGCGAATTCGCG)2:d(CGTGAATTCGCG)2, d(CGAGAATTCGCG)2, d(CGCGAATTCACG)2, d(CGCGAATTCTCG)2, and d(CGCAGAATTCGCG).d(CGCGAATTCGCG).
Biopolymers 1984;23(12):2901-29.
1984: Keepers J; Kollman P A; James T L
Molecular mechanical studies of base-pair opening in d(CGCGC):d(GCGCG), dG5 . dC5, d(TATAT):d(ATATA), and dA5 . dT5 in the B and Z forms of DNA.
Biopolymers 1984;23(11 Pt 2):2499-511.
1984: Sherry A D; Keepers J; James T L; Teherani J
Methyl motions in 13C-methylated concanavalin as studied by 13C magnetic resonance relaxation techniques.
Biochemistry 1984;23(14):3181-5.
1984: Gochin M; James T L; Shafer R H
In vivo 19F-NMR of 5-fluorouracil incorporation into RNA and metabolites in Escherichia coli cells.
Biochimica et biophysica acta 1984;804(1):118-24.
1984: Broido M S; Zon G; James T L
Complete assignment of the non-exchangeable proton nmr resonances of [d-(GGAATTCC)]2 using two-dimensional nuclear overhauser effect spectra.
Biochemical and biophysical research communications 1984;119(2):663-70.
1984: Moseley M E; Nishimura M C; Pitts L H; Bartkowski H M; James T L
Proton nuclear magnetic resonance spectroscopy of normal and edematous brain tissue in vitro: changes in relaxation during tissue storage.
Magnetic resonance imaging 1984;2(3):205-9.
1983: Delbarre A; Shafer R H; James T L
19F-NMR study of DNA bis-intercalation.
Biopolymers 1983;22(12):2497-500.
1983: Koretsky A P; Wang S; Murphy-Boesch J; Klein M P; James T L; Weiner M W
31P NMR spectroscopy of rat organs, in situ, using chronically implanted radiofrequency coils.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(24):7491-5.
1983: Bendel P; Murphy-Boesch J; James T L
Deuterium NMR in the solid-state and in solution of the molecular motion of the bases in poly(I) and poly(I) . poly(C).
Biochimica et biophysica acta 1983;759(3):205-13.
1983: Düzgünes N; Wilschut J; Hong K; Fraley R; Perry C; Friend D S; James T L; Papahadjopoulos D
Physicochemical characterization of large unilamellar phospholipid vesicles prepared by reverse-phase evaporation.
Biochimica et biophysica acta 1983;732(1):289-99.
1983: Bendel P; James T L
Structural and dynamic differences between supercoiled and linear DNA from proton NMR.
Proceedings of the National Academy of Sciences of the United States of America 1983;80(11):3284-6.
1983: Berman E; James T L
13C-n.m.r.-spectral study of galactosyltransferase specificity with regard to the carbohydrate side-chain of native ovalbumin.
Carbohydrate research 1983;113(1):141-50.
1982: Bolton P H; Clawson G; Basus V J; James T L
Comparison of ribonucleic acid-protein interactions in messenger ribonucleoproteins, ribosomes, MS2 virus, and Q beta virus examined via phosphorus-31 nuclear magnetic resonance relaxation.
Biochemistry 1982;21(24):6073-81.
1982: Taylor A; Sawan S; James T L
Structural aspects of the inhibitor complex formed by N-(leucyl)-o-aminobenzenesulfonate and manganese with Zn2+-Mn2+ leucine aminopeptidase (EC 3.4.11.1). Studies by NMR.
The Journal of biological chemistry 1982;257(19):11571-6.
1982: Keepers J W; Kollman P A; Weiner P K; James T L
Molecular mechanical studies of DNA flexibility: coupled backbone torsion angles and base-pair openings.
Proceedings of the National Academy of Sciences of the United States of America 1982;79(18):5537-41.
1982: Mirau P A; Shafer R H; James T L; Bolton P H
Fluoroquinacrine binding to nucleic acids: investigation of the 19F-NMR, optical, and fluorescence properties in the presence of DNA, poly(A), and tRNA.
Biopolymers 1982;21(5):909-21.
1982: Mirau P A; Shafer R H; James T L
Binding of 5-fluorotryptamine to polynucleotides as a model for protein-nucleic acid interactions: fluorine-19 nuclear magnetic resonance, absorption, and fluorescence studies.
Biochemistry 1982;21(4):615-20.
1982: Goux W J; Perry C; James T L
An NMR study of 13C-enriched galactose attached to the single carbohydrate chain of hen ovalbumin. Motions of the carbohydrates of glycoproteins.
The Journal of biological chemistry 1982;257(4):1829-35.
1981: Bolton P H; Mirau P A; Shafer R H; James T L
Interaction of the antimalarial drug fluoroquine with DNA, tRNA, and poly(A): 19F-NMR chemical-shift and relaxation, optical absorption, and fluorescence studies.
Biopolymers 1981;20(3):435-49.
1981: James T L; Edmondson D E; Husain M
Glucose oxidase contains a disubstituted phosphorus residue. Phosphorus-31 nuclear magnetic resonance studies of the flavin and nonflavin phosphate residues.
Biochemistry 1981;20(3):617-21.
1980: Nuss M E; James T L; Apple M A; Kollman P A
An NMR study of the interaction of daunomycin with dinucleotides and dinucleoside phosphates.
Biochimica et biophysica acta 1980;609(1):136-47.
1980: Bolton P H; James T L
Conformational mobility of deoxyribonucleic acid, transfer ribonucleic acid, and poly(adenylic acid) as monitored by carbon-13 nuclear magnetic resonance relaxation.
Biochemistry 1980;19(7):1388-92.
1979: Harkey M R; Settle W L; James T L; Trevor A J
Spectral studies on the interaction of dichloromethane with hemoglobin.
Molecular pharmacology 1979;16(3):1065-74.
1979: Edmondson D E; James T L
Covalently bound non-coenzyme phosphorus residues in flavoproteins: 31P nuclear magnetic resonance studies of Azotobacter flavodoxin.
Proceedings of the National Academy of Sciences of the United States of America 1979;76(8):3786-9.
1979: James T L; Matthews R; Matson G B
Hemoglobin aggregation in oxygenated sickle cells studies by carbon-13 rotating frame spin-lattice relaxation in the presence of an off-resonance radiofrequency field.
Biopolymers 1979;18(7):1763-8.
1978: Fisher R W; James T L
Lateral diffusion of the phospholipid molecule in dipalmitoylphosphatidylcholine bilayers. An investigation using nuclear spin--lattice relaxation in the rotating frame.
Biochemistry 1978;17(7):1177-83.
1978: Matthews R M; James T L
Effect of dichloromethane on sickle cells. An in vitro water proton magnetic resonance relaxation study.
Biochemical and biophysical research communications 1978;80(4):879-85.
1977: Zipp A; Kuntz I D; James T L
Hemoglobin-water interactions in normal and sickle erythrocytes by proton magnetic resonance T1p measurements.
Archives of biochemistry and biophysics 1977;178(2):435-41.
1977: James T L
Measurements of water proton NMR spin-lattice relaxation time in the rotating frame (T1p) for studying motions in solutions of giant macro-molecules and supramolecular particles (T2 virus).
Physiological chemistry and physics 1977;9(2):161-6.
1976: James T L
Binding of adenosine 5'-diphosphate to creatine kinase. An investigation using intermolecular nuclear Overhauser effect measurements.
Biochemistry 1976;15(21):4724-30.
1976: James T L; Pogolotti A L; Ivanetich K M; Wataya Y; Lam S S; Santi D V
Thymidylate synthetase: fluorine-19 nmr characterization of the active site peptide covalently bound to 5-fluoro-2'-deoxyuridylate and 5,10-methylenetetrahydrofolate.
Biochemical and biophysical research communications 1976;72(2):404-10.
1976: Zipp A; James T L; Kuntz I D; Shohet S B
Water proton magnetic resonance studies of normal and sickle erythrocytes. Temperature and volume dependence.
Biochimica et biophysica acta 1976;428(2):291-303.
1974: James T L; Cohn M
Structural aspects of manganese-pyruvate kinase substrate and inhibitor complexes deduced from proton magnetic relaxation rates of pyruvate and a phosphoenolpyruvate analog.
The Journal of biological chemistry 1974;249(11):3519-26.
1974: Ostroy F; James T L; Noggle J H; Sarrif A; Hokin L E
Studies on the characterization of the sodium-potassium transport adenosinetriphosphatase. Nuclear magnetic resonance studies of 23Na binding to the purified and partially purified enzyme.
Archives of biochemistry and biophysics 1974;162(2):421-5.
1974: James T L; Cohn M
The role of the lysyl residue at the active site of creatine kinase. Nuclear Overhauser effect studies.
The Journal of biological chemistry 1974;249(8):2599-604.
1973: James T L; Ludwig M L; Cohn M
Dependence of the proton magnetic resonance spectra on the oxidation state of flavodoxin from Clostridium MP and from Peptostreptococcus elsdenii.
Proceedings of the National Academy of Sciences of the United States of America 1973;70(12):3292-5.
1973: James T L; Reuben J; Cohn M
Nuclear magnetic resonance study of the binding of phosphoenolpyruvate and phosphoenol-alpha-ketobutyrate to manganese pyruvate kinase. Temperature, frequency,and monovalent cation dependence of water proton nuclear magnetic resonance relaxation rates.
The Journal of biological chemistry 1973;248(18):6443-9.
1972: James T L; Gillen K T
Nuclear magnetic resonance relaxation time and self-diffusion constant of water in hen egg white and yolk.
Biochimica et biophysica acta 1972;286(1):10-5.
1972: James T L; Noggle J H
23 Na NMR studies of sodium ion interactions: phosphatidyl serine, phosphoserine, and phosphoethanolamine.
Analytical biochemistry 1972;49(1):208-17.
1972: Mild K H; James T L; Gillen K T
Nuclear magnetic resonance relaxation time and self-diffusion coefficient measurements of water in frog ovarian eggs (Rana pipiens).
Journal of cellular physiology 1972;80(1):155-8.
1969: James T L; Noggle J H
23Na nuclear magnetic resonance relaxation studies of sodium ion interaction with soluble RNA.
Proceedings of the National Academy of Sciences of the United States of America 1969;62(3):644-9.

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