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Sung-Huo Kim
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64
Kim, Rosalind
43
Yokota, Hisao
23
Jancarik, Jaru
14
Choi, In-Geol
13
Shin, Dong Hae
10
Holbrook, Stephen
9
Lou, Yun
8
Chen, Shengfeng
8
Adams, Paul
8
Pufan, Ramona
7
Schulze-Gahmen, Ursula
7
Dubchak, Inna
7
Liu, Jinyu
6
Kim, Kyeong Kyu
6
Ames, GF
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All Publications
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2008: Shin Dong Hae; Proudfoot Michael; Lim Hyo Jin; Choi In-Kyu; Yokota Hisao; Yakunin Alexander F; Kim Rosalind; Kim Sung-Hou
Structural and enzymatic characterization of DR1281: A calcineurin-like phosphoesterase from Deinococcus radiodurans.
Proteins 2008;70(3):1000-9.
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2007: Xu Qian Steven; Ankoudinova Irina; Lou Yun; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a transcriptional activator of comK gene from Bacillus halodurans.
Proteins 2007;69(2):409-14.
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2007: Shin Dong Hae; Hou Jingtong; Chandonia John-Marc; Das Debanu; Choi In-Geol; Kim Rosalind; Kim Sung-Hou
Structure-based inference of molecular functions of proteins of unknown function from Berkeley Structural Genomics Center.
Journal of structural and functional genomics 2007;8(2-3):99-105.
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2007: Das Debanu; Xu Qian Steven; Lee Jonas Y; Ankoudinova Irina; Huang Candice; Lou Yun; DeGiovanni Andy; Kim Rosalind; Kim Sung-Hou
Crystal structure of the multidrug efflux transporter AcrB at 3.1A resolution reveals the N-terminal region with conserved amino acids.
Journal of structural biology 2007;158(3):494-502.
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2007: Oganesyan Vaheh; Adams Paul D; Jancarik Jarmila; Kim Rosalind; Kim Sung-Hou
Structure of O67745_AQUAE, a hypothetical protein from Aquifex aeolicus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2007;63(Pt 5):369-74.
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2007: Das Debanu; Hyun Hannah; Lou Yun; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a novel single-stranded DNA binding protein from Mycoplasma pneumoniae.
Proteins 2007;67(3):776-82.
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2007: Oganesyan Natalia; Ankoudinova Irina; Kim Sung-Hou; Kim Rosalind
Effect of osmotic stress and heat shock in recombinant protein overexpression and crystallization.
Protein expression and purification 2007;52(2):280-5.
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2007: Choi In-Geol; Kim Sung-Hou
Global extent of horizontal gene transfer.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(11):4489-94.
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2006: Choi In-Geol; Kim Sung-Hou
Evolution of protein structural classes and protein sequence families.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(38):14056-61.
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2006: Shin Dong Hae; Kim Jeong-Sun; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae.
Protein science : a publication of the Protein Society 2006;15(4):921-8.
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2006: Sims Gregory E; Kim Sung-Hou
A method for evaluating the structural quality of protein models by using higher-order phi-psi pairs scoring.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(12):4428-32.
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2006: Kim Jeong-Sun; Shin Dong Hae; Pufan Ramona; Huang Candice; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning.
Proteins 2006;62(2):322-8.
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2006: Chandonia John-Marc; Kim Sung-Hou; Brenner Steven E
Target selection and deselection at the Berkeley Structural Genomics Center.
Proteins 2006;62(2):356-70.
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2006: Chandonia John-Marc; Kim Sung-Hou
Structural proteomics of minimal organisms: conservation of protein fold usage and evolutionary implications.
BMC structural biology 2006;6():7.
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2005: Xu Qian Steven; Jancarik Jarmila; Lou Yun; Kuznetsova Kate; Yakunin Alexander F; Yokota Hisao; Adams Paul; Kim Rosalind; Kim Sung-Hou
Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate.
Journal of structural and functional genomics 2005;6(4):269-79.
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2005: Shin Dong Hae; Lou Yun; Jancarik Jaru; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of TM1457 from Thermotoga maritima.
Journal of structural biology 2005;152(2):113-7.
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2005: Liu Jinyu; Lou Yun; Yokota Hisao; Adams Paul D; Kim Rosalind; Kim Sung-Hou
Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP.
Journal of molecular biology 2005;354(2):289-303.
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2005: Chen Shengfeng; Yakunin Alexander F; Proudfoot Michael; Kim Rosalind; Kim Sung-Hou
Structural and functional characterization of a 5,10-methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087).
Proteins 2005;61(2):433-43.
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2005: Schulze-Gahmen Ursula; Aono Shelly; Chen Shengfeng; Yokota Hisao; Kim Rosalind; Kim Sung Hou
Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function.
Acta crystallographica. Section D, Biological crystallography 2005;61(Pt 10):1343-7.
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2005: Oganesyan Vaheh; Huang Candice; Adams Paul D; Jancarik Jaru; Yokota Hisao A; Kim Rosalind; Kim Sung-Hou
Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 7):640-6.
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2005: Liu Jinyu; Huang Candice; Shin Dong-Hae; Yokota Hisao; Jancarik Jaru; Kim Jeong-Sun; Adams Paul D; Kim Rosalind; Kim Sung-Hou
Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization.
Journal of molecular biology 2005;350(5):987-96.
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2005: Oganesyan Vaheh; Oganesyan Natalia; Adams Paul D; Jancarik Jaru; Yokota Hisao A; Kim Rosalind; Kim Sung-Hou
Crystal structure of the "PhoU-like" phosphate uptake regulator from Aquifex aeolicus.
Journal of bacteriology 2005;187(12):4238-44.
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2005: Liu Jinyu; Oganesyan Natalia; Shin Dong-Hae; Jancarik Jarmila; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Structural characterization of an iron-sulfur cluster assembly protein IscU in a zinc-bound form.
Proteins 2005;59(4):875-81.
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2005: Shin Dong Hae; Oganesyan Natalia; Jancarik Jaru; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum.
The Journal of biological chemistry 2005;280(18):18326-35.
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2005: Liu Jinyu; Lou Yun; Yokota Hisao; Adams Paul D; Kim Rosalind; Kim Sung-Hou
Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters.
The Journal of biological chemistry 2005;280(16):15960-6.
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2005: Kim Jeong-Sun; DeGiovanni Andy; Jancarik Jaru; Adams Paul D; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(9):3248-53.
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2005: Hou Jingtong; Jun Se-Ran; Zhang Chao; Kim Sung-Hou
Global mapping of the protein structure space and application in structure-based inference of protein function.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(10):3651-6.
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2005: Card Graeme L; Blasdel Landy; England Bruce P; Zhang Chao; Suzuki Yoshihisa; Gillette Sam; Fong Daniel; Ibrahim Prabha N; Artis Dean R; Bollag Gideon; Milburn Michael V; Kim Sung-Hou; Schlessinger Joseph; Zhang Kam Y J
A family of phosphodiesterase inhibitors discovered by cocrystallography and scaffold-based drug design.
Nature biotechnology 2005;23(2):201-7.
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2005: Das Debanu; Oganesyan Natasha; Yokota Hisao; Pufan Ramona; Kim Rosalind; Kim Sung-Hou
Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae.
Proteins 2005;58(2):504-8.
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2005: Sims Gregory E; Choi In-Geol; Kim Sung-Hou
Protein conformational space in higher order phi-Psi maps.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(3):618-21.
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2005: Wang Weiru; Kim Rosalind; Yokota Hisao; Kim Sung-Hou
Crystal structure of flavin binding to FAD synthetase of Thermotoga maritima.
Proteins 2005;58(1):246-8.
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2005: Oganesyan Natalia; Kim Sung-Hou; Kim Rosalind
On-column protein refolding for crystallization.
Journal of structural and functional genomics 2005;6(2-3):177-82.
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2005: Kim Sung-Hou; Shin Dong Hae; Liu Jinyu; Oganesyan Vaheh; Chen Shengfeng; Xu Qian Steven; Kim Jeong-Sun; Das Debanu; Schulze-Gahmen Ursula; Holbrook Stephen R; Holbrook Elizabeth L; Martinez Bruno A; Oganesyan Natalia; DeGiovanni Andy; Lou Yun; Henriquez Marlene; Huang Candice; Jancarik Jaru; Pufan Ramona; Choi In-Geol; Chandonia John-Marc; Hou Jingtong; Gold Barbara; Yokota Hisao; Brenner Steven E; Adams Paul D; Kim Rosalind
Structural genomics of minimal organisms and protein fold space.
Journal of structural and functional genomics 2005;6(2-3):63-70.
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2004: Card Graeme L; England Bruce P; Suzuki Yoshihisa; Fong Daniel; Powell Ben; Lee Byunghun; Luu Catherine; Tabrizizad Maryam; Gillette Sam; Ibrahim Prabha N; Artis Dean R; Bollag Gideon; Milburn Michael V; Kim Sung-Hou; Schlessinger Joseph; Zhang Kam Y J
Structural basis for the activity of drugs that inhibit phosphodiesterases.
Structure (London, England : 1993) 2004;12(12):2233-47.
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2004: Jancarik Jarmila; Pufan Ramona; Hong Connie; Kim Sung Hou; Kim Rosalind
Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 9):1670-3.
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2004: Shin Dong Hae; Lou Yun; Jancarik Jaru; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(36):13198-203.
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2004: Chen Shengfeng; Shin Dong-Hae; Pufan Ramona; Kim Rosalind; Kim Sung-Hou
Crystal structure of methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087) at 2.2 A resolution.
Proteins 2004;56(4):839-43.
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2004: Shin Dong Hae; Brandsen Jeroen; Jancarik Jaru; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome.
Journal of molecular biology 2004;341(1):227-39.
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2004: Zhang Kam Y J; Card Graeme L; Suzuki Yoshihisa; Artis D Richard; Fong Daniel; Gillette Sam; Hsieh Davin; Neiman Joshua; West Brian L; Zhang Chao; Milburn Michael V; Kim Sung-Hou; Schlessinger Joseph; Bollag Gideon
A glutamine switch mechanism for nucleotide selectivity by phosphodiesterases.
Molecular cell 2004;15(2):279-86.
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2004: Oganesyan Vaheh; Pufan Ramona; DeGiovanni Andrew; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Structure of the putative DNA-binding protein SP_1288 from Streptococcus pyogenes.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 7):1266-71.
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2004: Chen Shengfeng; Yakunin Alexander F; Kuznetsova Ekaterina; Busso Didier; Pufan Ramona; Proudfoot Michael; Kim Rosalind; Kim Sung-Hou
Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii.
The Journal of biological chemistry 2004;279(30):31854-62.
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2004: Liu Jinyu; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to nusb proteins.
Proteins 2004;55(4):1082-6.
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2004: Chen Shengfeng; Jancrick Jaru; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif.
Proteins 2004;55(4):785-91.
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2004: Shin Dong Hae; Choi In-Geol; Busso Didier; Jancarik Jaru; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Structure of OsmC from Escherichia coli: a salt-shock-induced protein.
Acta crystallographica. Section D, Biological crystallography 2004;60(Pt 5):903-11.
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2004: Xu Qian Steven; Shin Dong-Hae; Pufan Ramona; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a phosphotransacetylase from Streptococcus pyogenes.
Proteins 2004;55(2):479-81.
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2004: Choi In-Geol; Kwon Jaimyoung; Kim Sung-Hou
Local feature frequency profile: a method to measure structural similarity in proteins.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(11):3797-802.
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2004: Busso Didier; Kim Rosalind; Kim Sung-Hou
Using an Escherichia coli cell-free extract to screen for soluble expression of recombinant proteins.
Journal of structural and functional genomics 2004;5(1-2):69-74.
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2003: Shin Dong Hae; Nguyen Henry Huy; Jancarik Jaru; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain.
Biochemistry 2003;42(46):13429-37.
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2003: Liu Jinyu; Wang Weiru; Shin Dong Hae; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6 A resolution: a novel methyltransferase fold.
Proteins 2003;53(2):326-8.
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2003: Moshinsky Deborah J; Bellamacina Cornelia R; Boisvert David C; Huang Ping; Hui Terence; Jancarik Jaru; Kim Sung-Hou; Rice Audie G
SU9516: biochemical analysis of cdk inhibition and crystal structure in complex with cdk2.
Biochemical and biophysical research communications 2003;310(3):1026-31.
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2003: Sims Gregory E; Kim Sung-Hou
Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes.
Nucleic acids research 2003;31(19):5607-16.
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2003: Wang Weiru; Kim Rosalind; Jancarik Jaru; Yokota Hisao; Kim Sung-Hou
Crystal structure of a flavin-binding protein from Thermotoga maritima.
Proteins 2003;52(4):633-5.
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2003: Oganesyan Vaheh; Busso Didier; Brandsen Jeroen; Chen Shengfeng; Jancarik Jaru; Kim Rosalind; Kim Sung-Hou
Structure of the hypothetical protein AQ_1354 from Aquifex aeolicus.
Acta crystallographica. Section D, Biological crystallography 2003;59(Pt 7):1219-23.
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2003: Shin Dong Hae; Roberts Anne; Jancarik Jaru; Yokota Hisao; Kim Rosalind; Wemmer David E; Kim Sung-Hou
Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima.
Protein science : a publication of the Protein Society 2003;12(7):1464-72.
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2003: Kim Rosalind; Lai Luhua; Lee Hi-Hong; Cheong Gang-Won; Kim Kyeong Kyu; Wu Zheng; Yokota Hisao; Marqusee Susan; Kim Sung-Hou
On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(14):8151-5.
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2003: Busso Didier; Kim Rosalind; Kim Sung-Hou
Expression of soluble recombinant proteins in a cell-free system using a 96-well format.
Journal of biochemical and biophysical methods 2003;55(3):233-40.
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2003: Hou Jingtong; Sims Gregory E; Zhang Chao; Kim Sung-Hou
A global representation of the protein fold space.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(5):2386-90.
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2003: Schulze-Gahmen Ursula; Pelaschier Joanne; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein.
Proteins 2003;50(4):526-30.
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2003: Zhang Chao; Kim Sung-Hou
Overview of structural genomics: from structure to function.
Current opinion in chemical biology 2003;7(1):28-32.
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2003: Kim Sung-Hou; Shin Dong Hae; Choi In-Geol; Schulze-Gahmen Ursula; Chen Shengfeng; Kim Rosalind
Structure-based functional inference in structural genomics.
Journal of structural and functional genomics 2003;4(2-3):129-35.
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2003: Choi In-Geol; Shin Dong Hae; Brandsen Jeroen; Jancarik Jaru; Busso Didier; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution.
Journal of structural and functional genomics 2003;4(1):31-4.
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2002: Kim Sung-Hou; Wang Weiru; Kim Kyeong Kyu
Dynamic and clustering model of bacterial chemotaxis receptors: structural basis for signaling and high sensitivity.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(18):11611-5.
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2002: Shin Dong Hae; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(12):7980-5.
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2002: Wang Weiru; Cho Ho S; Kim Rosalind; Jancarik Jaru; Yokota Hisao; Nguyen Henry H; Grigoriev Igor V; Wemmer David E; Kim Sung-Hou
Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states.
Journal of molecular biology 2002;319(2):421-31.
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2002: Zhang Chao; Hou Jingtong; Kim Sung-Hou
Fold prediction of helical proteins using torsion angle dynamics and predicted restraints.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(6):3581-5.
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2002: Schulze-Gahmen Ursula; Kim Sung-Hou
Structural basis for CDK6 activation by a virus-encoded cyclin.
Nature structural biology 2002;9(3):177-81.
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2002: Martinez-Cruz Luis Alfonso; Dreyer Matthias K; Boisvert David C; Yokota Hisao; Martinez-Chantar Maria Luz; Kim Rosalind; Kim Sung-Hou
Crystal structure of MJ1247 protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase.
Structure (London, England : 1993) 2002;10(2):195-204.
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2002: Huang Lan; Hung Liwei; Odell Mark; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii.
Journal of structural and functional genomics 2002;2(3):121-7.
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2002: Shin Dong Hae; Yokota Hisao; Kim Rosalind; Kim Sung-Hou
Crystal structure of a conserved hypothetical protein from Escherichia coli.
Journal of structural and functional genomics 2002;2(1):53-66.
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2001: Du X; Wang W; Kim R; Yakota H; Nguyen H; Kim S H
Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii.
Biochemistry 2001;40(47):14166-72.
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2001: Schulze-Gahmen U; Kim S H
Crystallization of a complex between human CDK6 and a virus-encoded cyclin is critically dependent on the addition of small charged organic molecules.
Acta crystallographica. Section D, Biological crystallography 2001;57(Pt 9):1287-9.
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2001: Kaminker P G; Kim S H; Taylor R D; Zebarjadian Y; Funk W D; Morin G B; Yaswen P; Campisi J
TANK2, a new TRF1-associated poly(ADP-ribose) polymerase, causes rapid induction of cell death upon overexpression.
The Journal of biological chemistry 2001;276(38):35891-9.
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2001: Grigoriev I V; Zhang C; Kim S H
Sequence-based detection of distantly related proteins with the same fold.
Protein engineering 2001;14(7):455-8.
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2001: Cho H; Wang W; Kim R; Yokota H; Damo S; Kim S H; Wemmer D; Kustu S; Yan D
BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(15):8525-30.
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2001: Dreyer M K; Borcherding D R; Dumont J A; Peet N P; Tsay J T; Wright P S; Bitonti A J; Shen J; Kim S H
Crystal structure of human cyclin-dependent kinase 2 in complex with the adenine-derived inhibitor H717.
Journal of medicinal chemistry 2001;44(4):524-30.
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2001: Wang W; Kim R; Jancarik J; Yokota H; Kim S H
Crystal structure of phosphoserine phosphatase from Methanococcus jannaschii, a hyperthermophile, at 1.8 A resolution.
Structure (London, England : 1993) 2001;9(1):65-71.
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2001: Du X; Frei H; Kim S H
Comparison of nitrophenylethyl and hydroxyphenacyl caging groups.
Biopolymers 2001;62(3):147-9.
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2000: Du X; Choi I G; Kim R; Wang W; Jancarik J; Yokota H; Kim S H
Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(26):14079-84.
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2000: Hsu H L; Gilley D; Galande S A; Hande M P; Allen B; Kim S H; Li G C; Campisi J; Kohwi-Shigematsu T; Chen D J
Ku acts in a unique way at the mammalian telomere to prevent end joining.
Genes & development 2000;14(22):2807-12.
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2000: Lai L; Yokota H; Hung L W; Kim R; Kim S H
Crystal structure of archaeal RNase HII: a homologue of human major RNase H.
Structure (London, England : 1993) 2000;8(8):897-904.
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2000: Kim R; Yokota H; Kim S H
Electrophoresis of proteins and protein-protein complexes in a native agarose gel.
Analytical biochemistry 2000;282(1):147-9.
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2000: Kim S H
Structural genomics of microbes: an objective.
Current opinion in structural biology 2000;10(3):380-3.
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2000: Du X; Frei H; Kim S H
The mechanism of GTP hydrolysis by Ras probed by Fourier transform infrared spectroscopy.
The Journal of biological chemistry 2000;275(12):8492-500.
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2000: Zhang C; Kim S H
Environment-dependent residue contact energies for proteins.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(6):2550-5.
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2000: Wang H; Boisvert D; Kim K K; Kim R; Kim S H
Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution.
The EMBO journal 2000;19(3):317-23.
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2000: Zhang Z; Berry E A; Huang L S; Kim S H
Mitochondrial cytochrome bc1 complex.
Sub-cellular biochemistry 2000;35():541-80.
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2000: Zhang C; Kim S H
The effect of dynamic receptor clustering on the sensitivity of biochemical signaling.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000;():353-64.
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1999: Müller-Dieckmann H J; Grantz A A; Kim S H
The structure of the signal receiver domain of the Arabidopsis thaliana ethylene receptor ETR1.
Structure (London, England : 1993) 1999;7(12):1547-56.
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1999: Grigoriev I V; Kim S H
Detection of protein fold similarity based on correlation of amino acid properties.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(25):14318-23.
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1999: Kim S H; Kaminker P; Campisi J
TIN2, a new regulator of telomere length in human cells.
Nature genetics 1999;23(4):405-12.
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1999: Berry E A; Zhang Z; Huang L S; Kim S H
Structures of quinone-binding sites in bc complexes: functional implications.
Biochemical Society transactions 1999;27(4):565-72.
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1999: Kim S S; Choi I G; Kim S H; Yu Y G
Molecular cloning, expression, and characterization of a thermostable glutamate racemase from a hyperthermophilic bacterium, Aquifex pyrophilus.
Extremophiles : life under extreme conditions 1999;3(3):175-83.
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1999: Kim K K; Yokota H; Kim S H
Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor.
Nature 1999;400(6746):787-92.
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1999: Hwang K Y; Chung J H; Kim S H; Han Y S; Cho Y
Structure-based identification of a novel NTPase from Methanococcus jannaschii.
Nature structural biology 1999;6(7):691-6.
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1999: Berry E A; Huang L S; Zhang Z; Kim S H
Structure of the avian mitochondrial cytochrome bc1 complex.
Journal of bioenergetics and biomembranes 1999;31(3):177-90.
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1999: Dubchak I; Muchnik I; Mayor C; Dralyuk I; Kim S H
Recognition of a protein fold in the context of the Structural Classification of Proteins (SCOP) classification.
Proteins 1999;35(4):401-7.
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1999: Kim S Y; Hwang K Y; Kim S H; Sung H C; Han Y S; Cho Y
Structural basis for cold adaptation. Sequence, biochemical properties, and crystal structure of malate dehydrogenase from a psychrophile Aquaspirillium arcticum.
The Journal of biological chemistry 1999;274(17):11761-7.
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1999: Hwang K Y; Cho C S; Kim S S; Baek K; Kim S H; Yu Y G; Cho Y
Crystallization and preliminary x-ray analysis of glutamate racemase from Aquifex pyrophilus, a hyperthermophilic bacterium.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 4):927-8.
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1999: Schulze-Gahmen U; Jung J U; Kim S H
Crystal structure of a viral cyclin, a positive regulator of cyclin-dependent kinase 6.
Structure (London, England : 1993) 1999;7(3):245-54.
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1999: Chi Y I; Martinez-Cruz L A; Jancarik J; Swanson R V; Robertson D E; Kim S H
Crystal structure of the beta-glycosidase from the hyperthermophile Thermosphaera aggregans: insights into its activity and thermostability.
FEBS letters 1999;445(2-3):375-83.
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1999: Wang H; Yokota H; Kim R; Kim S H
Expression, purification and preliminary X-ray analysis of a fibrillarin homolog from Methanococcus jannaschii, a hyperthermophile.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 1):338-40.
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1999: Hung L W; Kohmura M; Ariyoshi Y; Kim S H
Structural differences in D and L-monellin in the crystals of racemic mixture.
Journal of molecular biology 1999;285(1):311-21.
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1999: Choi I G; Bang W G; Kim S H; Yu Y G
Extremely thermostable serine-type protease from Aquifex pyrophilus. Molecular cloning, expression, and characterization.
The Journal of biological chemistry 1999;274(2):881-8.
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1998: Hung L W; Wang I X; Nikaido K; Liu P Q; Ames G F; Kim S H
Crystal structure of the ATP-binding subunit of an ABC transporter.
Nature 1998;396(6712):703-7.
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1998: Zarembinski T I; Hung L W; Mueller-Dieckmann H J; Kim K K; Yokota H; Kim R; Kim S H
Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(26):15189-93.
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1998: Goldman S; Kim R; Hung L W; Jancarik J; Kim S H
Purification, crystallization and preliminary X-ray crystallographic analysis of Pyrococcus furiosus DNA polymerase.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 5):986-8.
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1998: Kim K K; Hung L W; Yokota H; Kim R; Kim S H
Crystal structures of eukaryotic translation initiation factor 5A from Methanococcus jannaschii at 1.8 A resolution.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(18):10419-24.
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1998: Kim K K; Kim R; Kim S H
Crystal structure of a small heat-shock protein.
Nature 1998;394(6693):595-9.
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1998: Kim R; Kim K K; Yokota H; Kim S H
Small heat shock protein of Methanococcus jannaschii, a hyperthermophile.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(16):9129-33.
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1998: Hung L W; Kohmura M; Ariyoshi Y; Kim S H
Structure of an enantiomeric protein, D-monellin at 1.8 A resolution.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 4):494-500.
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1998: Gray N S; Wodicka L; Thunnissen A M; Norman T C; Kwon S; Espinoza F H; Morgan D O; Barnes G; LeClerc S; Meijer L; Kim S H; Lockhart D J; Schultz P G
Exploiting chemical libraries, structure, and genomics in the search for kinase inhibitors.
Science (New York, N.Y.) 1998;281(5376):533-8.
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1998: Kamata K; Kawamoto H; Honma T; Iwama T; Kim S H
Structural basis for chemical inhibition of human blood coagulation factor Xa.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(12):6630-5.
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1998: Zhang Z; Huang L; Shulmeister V M; Chi Y I; Kim K K; Hung L W; Crofts A R; Berry E A; Kim S H
Electron transfer by domain movement in cytochrome bc1.
Nature 1998;392(6677):677-84.
-
1998: Kim K K; Yokota H; Santoso S; Lerner D; Kim R; Kim S H
Purification, crystallization, and preliminary X-ray crystallographic data analysis of small heat shock protein homolog from Methanococcus jannaschii, a hyperthermophile.
Journal of structural biology 1998;121(1):76-80.
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1998: Dubchak I; Muchnik I; Kim S H
Assignment of folds for proteins of unknown function in three microbial genomes.
Microbial & comparative genomics 1998;3(3):171-5.
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1997: Kim K K; Yokota H; Kim R; Kim S H
Cloning, expression, and crystallization of a hyperthermophilic protein that is homologous to the eukaryotic translation initiation factor, eIF5A.
Protein science : a publication of the Protein Society 1997;6(10):2268-70.
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1997: Chi Y I; Yokota H; Kim S H
Apo structure of the ligand-binding domain of aspartate receptor from Escherichia coli and its comparison with ligand-bound or pseudoligand-bound structures.
FEBS letters 1997;414(2):327-32.
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1997: Choi I G; Kim S S; Ryu J R; Han Y S; Bang W G; Kim S H; Yu Y G
Random sequence analysis of genomic DNA of a hyperthermophile: Aquifex pyrophilus.
Extremophiles : life under extreme conditions 1997;1(3):125-34.
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1997: Lim J H; Yu Y G; Han Y S; Cho S; Ahn B Y; Kim S H; Cho Y
The crystal structure of an Fe-superoxide dismutase from the hyperthermophile Aquifex pyrophilus at 1.9 A resolution: structural basis for thermostability.
Journal of molecular biology 1997;270(2):259-74.
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1997: Hung L W; Kohmura M; Ariyoshi Y; Kim S H
Crystallization and preliminary X-ray analysis of D-monellin.
Acta crystallographica. Section D, Biological crystallography 1997;53(Pt 3):327-8.
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1997: Lim J H; Yu Y G; Choi I G; Ryu J R; Ahn B Y; Kim S H; Han Y S
Cloning and expression of superoxide dismutase from Aquifex pyrophilus, a hyperthermophilic bacterium.
FEBS letters 1997;406(1-2):142-6.
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1997: De Azevedo W F; Leclerc S; Meijer L; Havlicek L; Strnad M; Kim S H
Inhibition of cyclin-dependent kinases by purine analogues: crystal structure of human cdk2 complexed with roscovitine.
European journal of biochemistry / FEBS 1997;243(1-2):518-26.
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1997: Dubchak I; Muchnik I; Kim S H
Protein folding class predictor for SCOP: approach based on global descriptors.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():104-7.
-
1997: Holbrook S R; Kim S H
RNA crystallography.
Biopolymers 1997;44(1):3-21.
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1996: Schulze-Gahmen U; De Bondt H L; Kim S H
High-resolution crystal structures of human cyclin-dependent kinase 2 with and without ATP: bound waters and natural ligand as guides for inhibitor design.
Journal of medicinal chemistry 1996;39(23):4540-6.
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1996: Jamieson A C; Wang H; Kim S H
A zinc finger directory for high-affinity DNA recognition.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(23):12834-9.
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1996: Kim K K; Chamberlin H M; Morgan D O; Kim S H
Three-dimensional structure of human cyclin H, a positive regulator of the CDK-activating kinase.
Nature structural biology 1996;3(10):849-55.
-
1996: Huang L; Jancarik J; Kim S H; Hofer F; Martin G S
Crystallization and preliminary crystallographic analysis of the Ras binding domain of RalGDS, a guanine nucleotide dissociation stimulator of the Ral protein.
Acta crystallographica. Section D, Biological crystallography 1996;52(Pt 5):1033-5.
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1996: Yeh J I; Biemann H P; Privé G G; Pandit J; Koshland D E; Kim S H
High-resolution structures of the ligand binding domain of the wild-type bacterial aspartate receptor.
Journal of molecular biology 1996;262(2):186-201.
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1996: De Azevedo W F; Mueller-Dieckmann H J; Schulze-Gahmen U; Worland P J; Sausville E; Kim S H
Structural basis for specificity and potency of a flavonoid inhibitor of human CDK2, a cell cycle kinase.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(7):2735-40.
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1996: Kim S H; Schulze-Gahmen U; Brandsen J; de Azevedo Júnior W F
Structural basis for chemical inhibition of CDK2.
Progress in cell cycle research 1996;2():137-45.
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1995: Dubchak I; Muchnik I; Holbrook S R; Kim S H
Prediction of protein folding class using global description of amino acid sequence.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(19):8700-4.
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1995: Schulze-Gahmen U; Brandsen J; Jones H D; Morgan D O; Meijer L; Vesely J; Kim S H
Multiple modes of ligand recognition: crystal structures of cyclin-dependent protein kinase 2 in complex with ATP and two inhibitors, olomoucine and isopentenyladenine.
Proteins 1995;22(4):378-91.
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1995: Kim R; Holbrook E L; Jancarik J; Kim S H
Synthesis and purification of milligram quantities of short RNA transcripts.
BioTechniques 1995;18(6):992-4.
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1995: Berry E A; Shulmeister V M; Huang L S; Kim S H
A new crystal form of bovine heart ubiquinol: cytochrome c oxidoreductase: determination of space group and unit-cell parameters.
Acta crystallographica. Section D, Biological crystallography 1995;51(Pt 2):235-9.
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1995: Somoza J R; Cho J M; Kim S H
The taste-active regions of monellin, a potently sweet protein.
Chemical senses 1995;20(1):61-8.
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1994: Taylor E W; Fear A L; Bohm A; Kim S H; Koths K
Structure-function studies on recombinant human macrophage colony-stimulating factor (M-CSF).
The Journal of biological chemistry 1994;269(49):31171-7.
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1994: Oh B H; Ames G F; Kim S H
Structural basis for multiple ligand specificity of the periplasmic lysine-, arginine-, ornithine-binding protein.
The Journal of biological chemistry 1994;269(42):26323-30.
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1994: Kim R; Holbrook E L; Jancarik J; Pandit J; Weng X; Bohm A; Kim S H
High-resolution crystals and preliminary X-ray diffraction studies of a catalytic RNA.
Acta crystallographica. Section D, Biological crystallography 1994;50(Pt 3):290-2.
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1994: Oh B H; Kang C H; De Bondt H; Kim S H; Nikaido K; Joshi A K; Ames G F
The bacterial periplasmic histidine-binding protein. structure/function analysis of the ligand-binding site and comparison with related proteins.
The Journal of biological chemistry 1994;269(6):4135-43.
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1994: Kim S H
"Frozen" dynamic dimer model for transmembrane signaling in bacterial chemotaxis receptors.
Protein science : a publication of the Protein Society 1994;3(2):159-65.
-
1993: Somoza J R; Jiang F; Tong L; Kang C H; Cho J M; Kim S H
Two crystal structures of a potently sweet protein. Natural monellin at 2.75 A resolution and single-chain monellin at 1.7 A resolution.
Journal of molecular biology 1993;234(2):390-404.
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1993: Scott W G; Milligan D L; Milburn M V; Privé G G; Yeh J; Koshland D E; Kim S H
Refined structures of the ligand-binding domain of the aspartate receptor from Salmonella typhimurium.
Journal of molecular biology 1993;232(2):555-73.
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1993: De Bondt H L; Rosenblatt J; Jancarik J; Jones H D; Morgan D O; Kim S H
Crystal structure of cyclin-dependent kinase 2.
Nature 1993;363(6430):595-602.
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1993: Holbrook S R; Dubchak I; Kim S H
PROBE: a computer program employing an integrated neural network approach to protein structure prediction.
BioTechniques 1993;14(6):984-9.
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1993: Dubchak I; Holbrook S R; Kim S H
Prediction of protein folding class from amino acid composition.
Proteins 1993;16(1):79-91.
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1993: Oh B H; Pandit J; Kang C H; Nikaido K; Gokcen S; Ames G F; Kim S H
Three-dimensional structures of the periplasmic lysine/arginine/ornithine-binding protein with and without a ligand.
The Journal of biological chemistry 1993;268(15):11348-55.
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1993: Yeh J I; Biemann H P; Pandit J; Koshland D E; Kim S H
The three-dimensional structure of the ligand-binding domain of a wild-type bacterial chemotaxis receptor. Structural comparison to the cross-linked mutant forms and conformational changes upon ligand binding.
The Journal of biological chemistry 1993;268(13):9787-92.
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1993: Rosenblatt J; De Bondt H; Jancarik J; Morgan D O; Kim S H
Purification and crystallization of human cyclin-dependent kinase 2.
Journal of molecular biology 1993;230(4):1317-9.
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1993: Weng X; Luecke H; Song I S; Kang D S; Kim S H; Huber R
Crystal structure of human annexin I at 2.5 A resolution.
Protein science : a publication of the Protein Society 1993;2(3):448-58.
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1993: Dubchak I; Holbrook S R; Kim S H
Comparison of two variations of neural network approach to the prediction of protein folding pattern.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1993;1():118-26.
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1992: Tomic M T; Somoza J R; Wemmer D E; Park Y W; Cho J M; Kim S H
1H resonance assignments, secondary structure and general topology of single-chain monellin in solution as determined by 1H 2D-NMR.
Journal of biomolecular NMR 1992;2(6):557-72.
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1992: Pandit J; Bohm A; Jancarik J; Halenbeck R; Koths K; Kim S H
Three-dimensional structure of dimeric human recombinant macrophage colony-stimulating factor.
Science (New York, N.Y.) 1992;258(5086):1358-62.
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1992: Muskal S M; Kim S H
Predicting protein secondary structure content. A tandem neural network approach.
Journal of molecular biology 1992;225(3):713-27.
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1992: Privé G G; Milburn M V; Tong L; de Vos A M; Yamaizumi Z; Nishimura S; Kim S H
X-ray crystal structures of transforming p21 ras mutants suggest a transition-state stabilization mechanism for GTP hydrolysis.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(8):3649-53.
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1992: Chung H H; Kim R; Kim S H
Biochemical and biological activity of phosphorylated and non-phosphorylated ras p21 mutants.
Biochimica et biophysica acta 1992;1129(3):278-86.
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1992: Kim S H; Privé G G; Yeh J; Scott W G; Milburn M V
A model for transmembrane signaling in a bacterial chemotaxis receptor.
Cold Spring Harbor symposia on quantitative biology 1992;57():17-24.
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1991: Kang C H; Shin W C; Yamagata Y; Gokcen S; Ames G F; Kim S H
Crystal structure of the lysine-, arginine-, ornithine-binding protein (LAO) from Salmonella typhimurium at 2.7-A resolution.
The Journal of biological chemistry 1991;266(35):23893-9.
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1991: Milburn M V; Privé G G; Milligan D L; Scott W G; Yeh J; Jancarik J; Koshland D E; Kim S H
Three-dimensional structures of the ligand-binding domain of the bacterial aspartate receptor with and without a ligand.
Science (New York, N.Y.) 1991;254(5036):1342-7.
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1991: Jancarik J; Scott W G; Milligan D L; Koshland D E; Kim S H
Crystallization and preliminary X-ray diffraction study of the ligand-binding domain of the bacterial chemotaxis-mediating aspartate receptor of Salmonella typhimurium.
Journal of molecular biology 1991;221(1):31-4.
-
1991: Tamura T; Holbrook S R; Kim S H
A Macintosh computer program for designing DNA sequences that code for specific peptides and proteins.
BioTechniques 1991;10(6):782-4.
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1991: Jiang F; Kim S H
"Soft docking": matching of molecular surface cubes.
Journal of molecular biology 1991;219(1):79-102.
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1991: Tong L A; de Vos A M; Milburn M V; Kim S H
Crystal structures at 2.2 A resolution of the catalytic domains of normal ras protein and an oncogenic mutant complexed with GDP.
Journal of molecular biology 1991;217(3):503-16.
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1990: Schafer W R; Trueblood C E; Yang C C; Mayer M P; Rosenberg S; Poulter C D; Kim S H; Rine J
Enzymatic coupling of cholesterol intermediates to a mating pheromone precursor and to the ras protein.
Science (New York, N.Y.) 1990;249(4973):1133-9.
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1990: Muskal S M; Holbrook S R; Kim S H
Prediction of the disulfide-bonding state of cysteine in proteins.
Protein engineering 1990;3(8):667-72.
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1990: Holbrook S R; Muskal S M; Kim S H
Predicting surface exposure of amino acids from protein sequence.
Protein engineering 1990;3(8):659-65.
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1990: Brünger A T; Milburn M V; Tong L; deVos A M; Jancarik J; Yamaizumi Z; Nishimura S; Ohtsuka E; Kim S H
Crystal structure of an active form of RAS protein, a complex of a GTP analog and the HRAS p21 catalytic domain.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(12):4849-53.
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1990: Milburn M V; Tong L; deVos A M; Brünger A; Yamaizumi Z; Nishimura S; Kim S H
Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins.
Science (New York, N.Y.) 1990;247(4945):939-45.
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1990: Pearlman D A; Kim S H
Atomic charges for DNA constituents derived from single-crystal X-ray diffraction data.
Journal of molecular biology 1990;211(1):171-87.
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1989: Kim S H; Kang C H; Kim R; Cho J M; Lee Y B; Lee T K
Redesigning a sweet protein: increased stability and renaturability.
Protein engineering 1989;2(8):571-5.
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1989: Tong L; Milburn M V; de Vos A M; Kim S H
Structure of ras proteins.
Science (New York, N.Y.) 1989;245(4915):244.
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1989: Schafer W R; Kim R; Sterne R; Thorner J; Kim S H; Rine J
Genetic and pharmacological suppression of oncogenic mutations in ras genes of yeast and humans.
Science (New York, N.Y.) 1989;245(4916):379-85.
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1989: Kang C H; Kim S H; Nikaido K; Gokcen S; Ames G F
Crystallization and preliminary X-ray studies of HisJ and LAO periplasmic proteins from Salmonella typhimurium.
Journal of molecular biology 1989;207(3):643-4.
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1989: Holbrook S R; Kim S H
Molecular model of the G protein alpha subunit based on the crystal structure of the HRAS protein.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(6):1751-5.
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1989: Tong L A; de Vos A M; Milburn M V; Jancarik J; Noguchi S; Nishimura S; Miura K; Ohtsuka E; Kim S H
Structural differences between a ras oncogene protein and the normal protein.
Nature 1989;337(6202):90-3.
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1988: Hou Y M; Kim R; Kim S H
Expression of the mouse metallothionein-I gene in Escherichia coli: increased tolerance to heavy metals.
Biochimica et biophysica acta 1988;951(1):230-4.
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1988: Kim S H; Tomic M T; Wemmer D E; Pearlman D; Holbrook S
Structure of DNA damaged by UV and psoralen.
Biochemical pharmacology 1988;37(9):1791.
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1988: Jancarik J; de Vos A; Kim S H; Miura K; Ohtsuka E; Noguchi S; Nishimura S
Crystallization of human c-H-ras oncogene products.
Journal of molecular biology 1988;200(1):205-7.
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1988: de Vos A M; Tong L; Milburn M V; Matias P M; Jancarik J; Noguchi S; Nishimura S; Miura K; Ohtsuka E; Kim S H
Three-dimensional structure of an oncogene protein: catalytic domain of human c-H-ras p21.
Science (New York, N.Y.) 1988;239(4842):888-93.
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1988: Kim S H; de Vos A M; Tong L; Milburn M V; Matias P M; Jancarik J; Ohtsuka E; Nishimura S
ras oncogene proteins: three-dimensional structures, functional implications, and a model for signal transducer.
Cold Spring Harbor symposia on quantitative biology 1988;53 Pt 1():273-81.
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1987: Tomic M T; Wemmer D E; Kim S H
Structure of a psoralen cross-linked DNA in solution by nuclear magnetic resonance.
Science (New York, N.Y.) 1987;238(4834):1722-5.
-
1987: Kim S H; Cech T R
Three-dimensional model of the active site of the self-splicing rRNA precursor of Tetrahymena.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(24):8788-92.
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1986: Pearlman D A; Kim S H
Conformational studies of nucleic acids: III. Empirical multiple correlation functions for nucleic acid torsion angles.
Journal of biomolecular structure & dynamics 1986;4(1):49-67.
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1986: Pearlman D A; Kim S H
Conformational studies of nucleic acids: IV. The conformational energetics of oligonucleotides: d(ApApApA) and ApApApA.
Journal of biomolecular structure & dynamics 1986;4(1):69-98.
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1985: Pearlman D A; Kim S H
Conformational studies of nucleic acids. II. The conformational energetics of commonly occurring nucleosides.
Journal of biomolecular structure & dynamics 1985;3(1):99-125.
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1985: Pearlman D A; Kim S H
Conformational studies of nucleic acids. I. A rapid and direct method for generating furanose coordinates from the pseudorotation angle.
Journal of biomolecular structure & dynamics 1985;3(1):85-98.
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