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Christos Ouzounis
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Research Profile (preview)
Occupations
Genes & Molecular Sequences
Chemicals & Drugs
Concepts & Ideas
Procedures
Phenomena
Activities & Behaviors
Living Beings
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Network (preview)
25
Sander, Chris
19
Kyrpides, Nikos
18
Kunin, Victor
18
Enright, Anton
17
Tsoka, Sophia
16
Goldovsky, Leon
14
Galvez, Carmen
12
Audit, Benjamin
9
Darzentas, Nikos
9
Tamames, Javier
8
Andrade, Miguel
8
Bork, Peer
7
Schneider, Reinhard
6
Pereira-Leal, Jose
6
Cases, Ildefonso
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All Publications
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2009: Freilich Shiri; Goldovsky Leon; Gottlieb Assaf; Blanc Eric; Tsoka Sophia; Ouzounis Christos A
Stratification of co-evolving genomic groups using ranked phylogenetic profiles.
BMC bioinformatics 2009;10():355.
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2009: Huminiecki Lukasz; Goldovsky Leon; Freilich Shiri; Moustakas Aristidis; Ouzounis Christos; Heldin Carl-Henrik
Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom.
BMC evolutionary biology 2009;9():28.
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2008: Theodosiou T; Darzentas N; Angelis L; Ouzounis C A
PuReD-MCL: a graph-based PubMed document clustering methodology.
Bioinformatics (Oxford, England) 2008;24(17):1935-41.
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2008: Murray Fiona; Darzentas Nikos; Hadzidimitriou Anastasia; Tobin Gerard; Boudjogra Myriam; Scielzo Cristina; Laoutaris Nikolaos; Karlsson Karin; Baran-Marzsak Fanny; Tsaftaris Athanasios; Moreno Carol; Anagnostopoulos Achilles; Caligaris-Cappio Federico; Vaur Dominique; Ouzounis Christos; Belessi Chrysoula; Ghia Paolo; Davi Fred; Rosenquist Richard; Stamatopoulos Kostas
Stereotyped patterns of somatic hypermutation in subsets of patients with chronic lymphocytic leukemia: implications for the role of antigen selection in leukemogenesis.
Blood 2008;111(3):1524-33.
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2008: Freilich Shiri; Goldovsky Leon; Ouzounis Christos A; Thornton Janet M
Metabolic innovations towards the human lineage.
BMC evolutionary biology 2008;8():247.
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2007: Darzentas Nikos; Goldovsky Leon; Ouzounis Christos A; Karapiperis Kleanthis; Karapiperis Christos
Science communication media for scientists and the public.
EMBO reports 2007;8(10):886-7.
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2007: Coulson Richard M R; Touboul Nathalie; Ouzounis Christos A
Lineage-specific partitions in archaeal transcription.
Archaea (Vancouver, B.C.) 2007;2(2):117-25.
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2007: Peregrín-Alvarez José M; Ouzounis Christos A
The comparative genomics of protein interactions.
Genome informatics. International Conference on Genome Informatics 2007;19():131-41.
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2007: Kamburov Atanas; Goldovsky Leon; Freilich Shiri; Kapazoglou Aliki; Kunin Victor; Enright Anton J; Tsaftaris Athanasios; Ouzounis Christos A
Denoising inferred functional association networks obtained by gene fusion analysis.
BMC genomics 2007;8():460.
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2007: Audit Benjamin; Levy Emmanuel D; Gilks Wally R; Goldovsky Leon; Ouzounis Christos A
CORRIE: enzyme sequence annotation with confidence estimates.
BMC bioinformatics 2007;8 Suppl 4():S3.
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2006: Ouzounis Christos; Mazière Pierre
Maps, books and other metaphors for systems biology.
Bio Systems 2006;85(1):6-10.
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2006: López-Bigas Núria; Blencowe Benjamin J; Ouzounis Christos A
Highly consistent patterns for inherited human diseases at the molecular level.
Bioinformatics (Oxford, England) 2006;22(3):269-77.
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2006: Ouzounis Christos A; Kunin Victor; Darzentas Nikos; Goldovsky Leon
A minimal estimate for the gene content of the last universal common ancestor--exobiology from a terrestrial perspective.
Research in microbiology 2006;157(1):57-68.
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2006: Tiffin Nicki; Adie Euan; Turner Frances; Brunner Han G; van Driel Marc A; Oti Martin; Lopez-Bigas Nuria; Ouzounis Christos; Perez-Iratxeta Carolina; Andrade-Navarro Miguel A; Adeyemo Adebowale; Patti Mary Elizabeth; Semple Colin A M; Hide Winston
Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes.
Nucleic acids research 2006;34(10):3067-81.
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2006: Furney Simon J; Higgins Desmond G; Ouzounis Christos A; López-Bigas Núria
Structural and functional properties of genes involved in human cancer.
BMC genomics 2006;7():3.
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2005: Darzentas Nikos; Rigoutsos Isidore; Ouzounis Christos A
Sensitive detection of sequence similarity using combinatorial pattern discovery: a challenging study of two distantly related protein families.
Proteins 2005;61(4):926-37.
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2005: Ouzounis Christos A
Ancestral state reconstructions for genomes.
Current opinion in genetics & development 2005;15(6):595-600.
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2005: Goldovsky Leon; Janssen Paul; Ahrén Dag; Audit Benjamin; Cases Ildefonso; Darzentas Nikos; Enright Anton J; López-Bigas Núria; Peregrin-Alvarez José M; Smith Mike; Tsoka Sophia; Kunin Victor; Ouzounis Christos A
CoGenT++: an extensive and extensible data environment for computational genomics.
Bioinformatics (Oxford, England) 2005;21(19):3806-10.
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2005: Smith Mike; Kunin Victor; Goldovsky Leon; Enright Anton J; Ouzounis Christos A
MagicMatch--cross-referencing sequence identifiers across databases.
Bioinformatics (Oxford, England) 2005;21(16):3429-30.
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2005: Kunin Victor; Goldovsky Leon; Darzentas Nikos; Ouzounis Christos A
The net of life: reconstructing the microbial phylogenetic network.
Genome research 2005;15(7):954-9.
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2005: Kunin Victor; Teichmann Sarah A; Huynen Martijn A; Ouzounis Christos A
The properties of protein family space depend on experimental design.
Bioinformatics (Oxford, England) 2005;21(11):2618-22.
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2005: Janssen Paul; Goldovsky Leon; Kunin Victor; Darzentas Nikos; Ouzounis Christos A
Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications.
EMBO reports 2005;6(5):397-9.
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2005: López-Bigas Núria; Audit Benjamin; Ouzounis Christos; Parra Genís; Guigó Roderic
Are splicing mutations the most frequent cause of hereditary disease?
FEBS letters 2005;579(9):1900-3.
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2005: Pereira-Leal José B; Audit Benjamin; Peregrin-Alvarez José M; Ouzounis Christos A
An exponential core in the heart of the yeast protein interaction network.
Molecular biology and evolution 2005;22(3):421-5.
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2005: Gilks Walter R; Audit Benjamin; de Angelis Daniela; Tsoka Sophia; Ouzounis Christos A
Percolation of annotation errors through hierarchically structured protein sequence databases.
Mathematical biosciences 2005;193(2):223-34.
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2005: Levy Emmanuel D; Ouzounis Christos A; Gilks Walter R; Audit Benjamin
Probabilistic annotation of protein sequences based on functional classifications.
BMC bioinformatics 2005;6():302.
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2005: Karp Peter D; Ouzounis Christos A; Moore-Kochlacs Caroline; Goldovsky Leon; Kaipa Pallavi; Ahrén Dag; Tsoka Sophia; Darzentas Nikos; Kunin Victor; López-Bigas Núria
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.
Nucleic acids research 2005;33(19):6083-9.
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2005: Goldovsky Leon; Cases Ildefonso; Enright Anton J; Ouzounis Christos A
BioLayout(Java): versatile network visualisation of structural and functional relationships.
Applied bioinformatics 2005;4(1):71-4.
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2005: Kunin Victor; Ouzounis Christos A
Clustering the annotation space of proteins.
BMC bioinformatics 2005;6():24.
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2005: Kunin Victor; Ahren Dag; Goldovsky Leon; Janssen Paul; Ouzounis Christos A
Measuring genome conservation across taxa: divided strains and united kingdoms.
Nucleic acids research 2005;33(2):616-21.
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2004: Tsoka Sophia; Simon David; Ouzounis Christos A
Automated metabolic reconstruction for Methanococcus jannaschii.
Archaea (Vancouver, B.C.) 2004;1(4):223-9.
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2004: Ahren Dag G; Ouzounis Christos A
Robustness of metabolic map reconstruction.
Journal of bioinformatics and computational biology 2004;2(3):589-93.
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2004: Coulson Richard M R; Hall Neil; Ouzounis Christos A
Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum.
Genome research 2004;14(8):1548-54.
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2004: Kunin Victor; Pereira-Leal José B; Ouzounis Christos A
Functional evolution of the yeast protein interaction network.
Molecular biology and evolution 2004;21(7):1171-6.
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2004: Pereira-Leal Jose B; Enright Anton J; Ouzounis Christos A
Detection of functional modules from protein interaction networks.
Proteins 2004;54(1):49-57.
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2004: López-Bigas Núria; Ouzounis Christos A
Genome-wide identification of genes likely to be involved in human genetic disease.
Nucleic acids research 2004;32(10):3108-14.
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2003: Tsoka Sophia; Ouzounis Christos A
Metabolic database systems for the analysis of genome-wide function.
Biotechnology and bioengineering 2003;84(7):750-5.
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2003: von Mering Christian; Zdobnov Evgeny M; Tsoka Sophia; Ciccarelli Francesca D; Pereira-Leal Jose B; Ouzounis Christos A; Bork Peer
Genome evolution reveals biochemical networks and functional modules.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(26):15428-33.
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2003: Ouzounis Christos A; Valencia Alfonso
Early bioinformatics: the birth of a discipline--a personal view.
Bioinformatics (Oxford, England) 2003;19(17):2176-90.
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2003: Kreil David P; Ouzounis Christos A
Comparison of sequence masking algorithms and the detection of biased protein sequence regions.
Bioinformatics (Oxford, England) 2003;19(13):1672-81.
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2003: Audit Benjamin; Ouzounis Christos A
From genes to genomes: universal scale-invariant properties of microbial chromosome organisation.
Journal of molecular biology 2003;332(3):617-33.
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2003: Weinel Christian; Ermolaeva Maria D; Ouzounis Christos
PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1.
Bioinformatics (Oxford, England) 2003;19(12):1457-60.
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2003: Enright Anton J; Kunin Victor; Ouzounis Christos A
Protein families and TRIBES in genome sequence space.
Nucleic acids research 2003;31(15):4632-8.
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2003: Janssen Paul; Enright Anton J; Audit Benjamin; Cases Ildefonso; Goldovsky Leon; Harte Nicola; Kunin Victor; Ouzounis Christos A
COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics.
Bioinformatics (Oxford, England) 2003;19(11):1451-2.
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2003: Kunin Victor; Ouzounis Christos A
GeneTRACE-reconstruction of gene content of ancestral species.
Bioinformatics (Oxford, England) 2003;19(11):1412-6.
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2003: Kunin Victor; Ouzounis Christos A
The balance of driving forces during genome evolution in prokaryotes.
Genome research 2003;13(7):1589-94.
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2003: Ouzounis Christos A; Coulson Richard M R; Enright Anton J; Kunin Victor; Pereira-Leal José B
Classification schemes for protein structure and function.
Nature reviews. Genetics 2003;4(7):508-19.
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2003: Cases Ildefonso; de Lorenzo Victor; Ouzounis Christos A
Transcription regulation and environmental adaptation in bacteria.
Trends in microbiology 2003;11(6):248-53.
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2003: Iliopoulos Ioannis; Tsoka Sophia; Andrade Miguel A; Enright Anton J; Carroll Mark; Poullet Patrick; Promponas Vassilis; Liakopoulos Theodore; Palaios Giorgos; Pasquier Claude; Hamodrakas Stavros; Tamames Javier; Yagnik Asutosh T; Tramontano Anna; Devos Damien; Blaschke Christian; Valencia Alfonso; Brett David; Martin David; Leroy Christophe; Rigoutsos Isidore; Sander Chris; Ouzounis Christos A
Evaluation of annotation strategies using an entire genome sequence.
Bioinformatics (Oxford, England) 2003;19(6):717-26.
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2003: Peregrin-Alvarez José Manuel; Tsoka Sophia; Ouzounis Christos A
The phylogenetic extent of metabolic enzymes and pathways.
Genome research 2003;13(3):422-7.
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2003: Coulson Richard M R; Ouzounis Christos A
The phylogenetic diversity of eukaryotic transcription.
Nucleic acids research 2003;31(2):653-60.
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2003: Iliopoulos Ioannis; Enright Anton J; Poullet Patrick; Ouzounis Christos A
Mapping Functional Associations in the Entire Genome of Drosophila melanogaster Using Fusion Analysis.
Comparative and functional genomics 2003;4(3):337-41.
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2003: Janssen Paul; Audit Benjamin; Cases Ildefonso; Darzentas Nikos; Goldovsky Leon; Kunin Victor; Lopez-Bigas Nuria; Peregrin-Alvarez José Manuel; Pereira-Leal José B; Tsoka Sophia; Ouzounis Christos A
Beyond 100 genomes.
Genome biology 2003;4(5):402.
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2003: Kunin Victor; Cases Ildefonso; Enright Anton J; de Lorenzo Victor; Ouzounis Christos A
Myriads of protein families, and still counting.
Genome biology 2003;4(2):401.
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2002: Gilks Walter R; Audit Benjamin; De Angelis Daniela; Tsoka Sophia; Ouzounis Christos A
Modeling the percolation of annotation errors in a database of protein sequences.
Bioinformatics (Oxford, England) 2002;18(12):1641-9.
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2002: Garcia-Vallvé Santiago; Janssen Paul J; Ouzounis Christos A
Genetic variation between Helicobacter pylori strains: gene acquisition or loss?
Trends in microbiology 2002;10(10):445-7.
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2002: Enright A J; Van Dongen S; Ouzounis C A
An efficient algorithm for large-scale detection of protein families.
Nucleic acids research 2002;30(7):1575-84.
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2002: Harte Rachel; Ouzounis Christos A
Genome-wide detection and family clustering of ion channels.
FEBS letters 2002;514(2-3):129-34.
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2002: Ouzounis Christos
Bioinformatics and the theoretical foundations of molecular biology.
Bioinformatics (Oxford, England) 2002;18(3):377-8.
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2002: Ouzounis Christos A; Karp Peter D
The past, present and future of genome-wide re-annotation.
Genome biology 2002;3(2):COMMENT2001.
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2001: Boucher L; Ouzounis C A; Enright A J; Blencowe B J
A genome-wide survey of RS domain proteins.
RNA (New York, N.Y.) 2001;7(12):1693-701.
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2001: Janssen P J; Audit B; Ouzounis C A
Strain-specific genes of Helicobacter pylori: distribution, function and dynamics.
Nucleic acids research 2001;29(21):4395-404.
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2001: Enright A J; Ouzounis C A
BioLayout--an automatic graph layout algorithm for similarity visualization.
Bioinformatics (Oxford, England) 2001;17(9):853-4.
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2001: Tsoka S; Ouzounis C A
Functional versatility and molecular diversity of the metabolic map of Escherichia coli.
Genome research 2001;11(9):1503-10.
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2001: Kreil D P; Ouzounis C A
Identification of thermophilic species by the amino acid compositions deduced from their genomes.
Nucleic acids research 2001;29(7):1608-15.
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2001: Coulson R M; Enright A J; Ouzounis C A
Transcription-associated protein families are primarily taxon-specific.
Bioinformatics (Oxford, England) 2001;17(1):95-7.
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2001: Enright A J; Ouzounis C A
Functional associations of proteins in entire genomes by means of exhaustive detection of gene fusions.
Genome biology 2001;2(9):RESEARCH0034.
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2001: Iliopoulos I; Enright A J; Ouzounis C A
Textquest: document clustering of Medline abstracts for concept discovery in molecular biology.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():384-95.
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2001: Iliopoulos I; Tsoka S; Andrade M A; Janssen P; Audit B; Tramontano A; Valencia A; Leroy C; Sander C; Ouzounis C A
Genome sequences and great expectations.
Genome biology 2001;2(1):INTERACTIONS0001.
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2000: Kyrpides N C; Ouzounis C A; Iliopoulos I; Vonstein V; Overbeek R
Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools.
Nucleic acids research 2000;28(22):4573-6.
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2000: Promponas V J; Enright A J; Tsoka S; Kreil D P; Leroy C; Hamodrakas S; Sander C; Ouzounis C A
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.
Bioinformatics (Oxford, England) 2000;16(10):915-22.
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2000: Tsoka S; Ouzounis C A
Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion.
Nature genetics 2000;26(2):141-2.
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2000: Tsoka S; Ouzounis C A
Recent developments and future directions in computational genomics.
FEBS letters 2000;480(1):42-8.
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2000: Enright A J; Ouzounis C A
GeneRAGE: a robust algorithm for sequence clustering and domain detection.
Bioinformatics (Oxford, England) 2000;16(5):451-7.
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2000: Ouzounis C A; Karp P D
Global properties of the metabolic map of Escherichia coli.
Genome research 2000;10(4):568-76.
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2000: Ouzounis C
Two or three myths about bioinformatics.
Bioinformatics (Oxford, England) 2000;16(3):187-9.
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2000: Thomas J; Milward D; Ouzounis C; Pulman S; Carroll M
Automatic extraction of protein interactions from scientific abstracts.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2000;():541-52.
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1999: Rigoutsos I; Floratos A; Ouzounis C; Gao Y; Parida L
Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins.
Proteins 1999;37(2):264-77.
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1999: Enright A J; Iliopoulos I; Kyrpides N C; Ouzounis C A
Protein interaction maps for complete genomes based on gene fusion events.
Nature 1999;402(6757):86-90.
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1999: Andrade M A; Ouzounis C; Sander C; Tamames J; Valencia A
Functional classes in the three domains of life.
Journal of molecular evolution 1999;49(5):551-7.
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1999: Raghavan S; Ouzounis C A
Novel coding regions in four complete archaeal genomes.
Nucleic acids research 1999;27(22):4405-8.
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1999: Ouzounis C
Orthology: another terminology muddle.
Trends in genetics : TIG 1999;15(11):445.
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1999: Kyrpides N; Overbeek R; Ouzounis C
Universal protein families and the functional content of the last universal common ancestor.
Journal of molecular evolution 1999;49(4):413-23.
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1999: Kyrpides N C; Ouzounis C A
Transcription in archaea.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(15):8545-50.
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1999: Tsoka S; Promponas V; Ouzounis C A
Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case.
FEBS letters 1999;451(3):354-5.
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1999: Andrade M A; Brown N P; Leroy C; Hoersch S; de Daruvar A; Reich C; Franchini A; Tamames J; Valencia A; Ouzounis C; Sander C
Automated genome sequence analysis and annotation.
Bioinformatics (Oxford, England) 1999;15(5):391-412.
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1999: Kyrpides N C; Ouzounis C A
Whole-genome sequence annotation: 'Going wrong with confidence'.
Molecular microbiology 1999;32(4):886-7.
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1999: Blencowe B J; Ouzounis C A
The PWI motif: a new protein domain in splicing factors.
Trends in biochemical sciences 1999;24(5):179-80.
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1999: Blaschke C; Andrade M A; Ouzounis C; Valencia A
Automatic extraction of biological information from scientific text: protein-protein interactions.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1999;():60-7.
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1998: Kyrpides N C; Ouzounis C A
Errors in genome reviews.
Science (New York, N.Y.) 1998;281(5382):1457.
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1998: Rodriguez-Monge L; Ouzounis C A; Kyrpides N C
A ferredoxin-like domain in RNA polymerase 30/40-kDa subunits.
Trends in biochemical sciences 1998;23(5):169-70.
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1998: Papadopoulos G K; Ouzounis C; Eliopoulos E
RGD sequences in several receptor proteins: novel cell adhesion function of receptors?
International journal of biological macromolecules 1998;22(1):51-7.
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1998: Ouzounis C; Pérez-Irratxeta C; Sander C; Valencia A
Are binding residues conserved?
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1998;():401-12.
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1998: Tamames J; Ouzounis C; Casari G; Sander C; Valencia A
EUCLID: automatic classification of proteins in functional classes by their database annotations.
Bioinformatics (Oxford, England) 1998;14(6):542-3.
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1997: Ouzounis C A; Kyrpides N C
ThiD-TenA: a gene pair fusion in eukaryotes.
Journal of molecular evolution 1997;45(6):708-11.
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1997: Kyrpides N C; Ouzounis C A
Bacterial sigma 70 transcription factor DNA-binding domains in the archaeon Methanococcus jannaschii.
Journal of molecular evolution 1997;45(6):706-7.
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1997: Andrade M; Casari G; de Daruvar A; Sander C; Schneider R; Tamames J; Valencia A; Ouzounis C
Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function.
Computer applications in the biosciences : CABIOS 1997;13(4):481-3.
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1997: Tamames J; Casari G; Ouzounis C; Valencia A
Conserved clusters of functionally related genes in two bacterial genomes.
Journal of molecular evolution 1997;44(1):66-73.
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1997: Perrakis A; Ouzounis C; Wilson K S
Evolution of immunoglobulin-like modules in chitinases: their structural flexibility and functional implications.
Folding & design 1997;2(5):291-4.
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1997: des Jardins M; Karp P D; Krummenacker M; Lee T J; Ouzounis C A
Prediction of enzyme classification from protein sequence without the use of sequence similarity.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():92-9.
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1996: Ouzounis C A; Kyrpides N C
The core histone fold: limits to functional versatility.
Journal of molecular evolution 1996;43(6):541-2.
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1996: Kyrpides N C; Woese C R; Ouzounis C A
KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins.
Trends in biochemical sciences 1996;21(11):425-6.
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1996: Paliakasis K; Routsias J; Petratos K; Ouzounis C; Kokkinidis M; Papadopoulos G K
Novel structural features of the human histocompatibility molecules HLA-DQ as revealed by modeling based on the published structure of the related molecule HLA-DR.
Journal of structural biology 1996;117(2):145-63.
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1996: Ouzounis C; Casari G; Sander C; Tamames J; Valencia A
Computational comparisons of model genomes.
Trends in biotechnology 1996;14(8):280-5.
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1996: Ouzounis C; Kyrpides N
The emergence of major cellular processes in evolution.
FEBS letters 1996;390(2):119-23.
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1996: Tamames J; Ouzounis C; Sander C; Valencia A
Genomes with distinct function composition.
FEBS letters 1996;389(1):96-101.
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1996: Ouzounis C; Casari G; Valencia A; Sander C
Novelties from the complete genome of Mycoplasma genitalium.
Molecular microbiology 1996;20(4):898-900.
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1996: Ouzounis C A; Kyrpides N C
Parallel origins of the nucleosome core and eukaryotic transcription from Archaea.
Journal of molecular evolution 1996;42(2):234-9.
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1996: Karp P D; Ouzounis C; Paley S
HinCyc: a knowledge base of the complete genome and metabolic pathways of H. influenzae.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1996;4():116-24.
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1995: Ouzounis C; Bork P; Casari G; Sander C
New protein functions in yeast chromosome VIII.
Protein science : a publication of the Protein Society 1995;4(11):2424-8.
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1995: Konstantopoulou I; Ouzounis C A; Drosopoulou E; Yiangou M; Sideras P; Sander C; Scouras Z G
A Drosophila hsp70 gene contains long, antiparallel, coupled open reading frames (LAC ORFs) conserved in homologous loci.
Journal of molecular evolution 1995;41(4):414-20.
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1995: Casari G; Andrade M A; Bork P; Boyle J; Daruvar A; Ouzounis C; Schneider R; Tamames J; Valencia A; Sander C
Challenging times for bioinformatics.
Nature 1995;376(6542):647-8.
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1995: Kyrpides N C; Ouzounis C A
Nucleic acid-binding metabolic enzymes: living fossils of stereochemical interactions?
Journal of molecular evolution 1995;40(6):564-9.
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1995: Bork P; Ouzounis C; Casari G; Schneider R; Sander C; Dolan M; Gilbert W; Gillevet P M
Exploring the Mycoplasma capricolum genome: a minimal cell reveals its physiology.
Molecular microbiology 1995;16(5):955-67.
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1995: Kyrpides N C; Ouzounis C A
The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosus.
Trends in biochemical sciences 1995;20(4):140-1.
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1995: Bork P; Ouzounis C; McEntyre J
Ready for a motif submission? A proposed checklist.
Trends in biochemical sciences 1995;20(3):104.
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1995: Ouzonis C; Kyrpides N; Sander C
Novel protein families in archaean genomes.
Nucleic acids research 1995;23(4):565-70.
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1994: Ouzounis C A; Kyrpides N C
On the evolution of arginases and related enzymes.
Journal of molecular evolution 1994;39(1):101-4.
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1994: Ouzounis C; Bork P; Sander C
The modular structure of NifU proteins.
Trends in biochemical sciences 1994;19(5):199-200.
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1994: Ouzounis C A; Kyrpides N C
Reverse interpretation: a hypothetical selection mechanism for adaptive mutagenesis based on autoregulated mRNA stability.
Journal of theoretical biology 1994;167(4):373-9.
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1994: Simos G; Panagiotidis C A; Skoumbas A; Choli D; Ouzounis C; Georgatsos J G
Barley beta-glucosidase: expression during seed germination and maturation and partial amino acid sequences.
Biochimica et biophysica acta 1994;1199(1):52-8.
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1994: Scharf M; Schneider R; Casari G; Bork P; Valencia A; Ouzounis C; Sander C
GeneQuiz: a workbench for sequence analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():348-53.
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1993: Ouzounis C; Sander C; Scharf M; Schneider R
Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures.
Journal of molecular biology 1993;232(3):805-25.
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1993: Kyrpides N C; Ouzounis C A
Mechanisms of specificity in mRNA degradation: autoregulation and cognate interactions.
Journal of theoretical biology 1993;163(3):373-92.
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1993: Gounari F; Merdes A; Quinlan R; Hess J; FitzGerald P G; Ouzounis C A; Georgatos S D
Bovine filensin possesses primary and secondary structure similarity to intermediate filament proteins.
The Journal of cell biology 1993;121(4):847-53.
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1993: Ouzounis C; Sander C
Homology of the NifS family of proteins to a new class of pyridoxal phosphate-dependent enzymes.
FEBS letters 1993;322(2):159-64.
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1992: Holm L; Ouzounis C; Sander C; Tuparev G; Vriend G
A database of protein structure families with common folding motifs.
Protein science : a publication of the Protein Society 1992;1(12):1691-8.
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1992: Bork P; Ouzounis C; Sander C; Scharf M; Schneider R; Sonnhammer E
Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.
Protein science : a publication of the Protein Society 1992;1(12):1677-90.
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1992: Ouzounis C; Sander C
TFIIB, an evolutionary link between the transcription machineries of archaebacteria and eukaryotes.
Cell 1992;71(2):189-90.
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1992: Bork P; Ouzounis C; Sander C; Scharf M; Schneider R; Sonnhammer E
What's in a genome?
Nature 1992;358(6384):287.
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1991: Ouzounis C A; Blencowe B J
Bacterial DNA replication initiation factor priA is related to proteins belonging to the 'DEAD-box' family.
Nucleic acids research 1991;19(24):6953.
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1991: Ouzounis C A; Melvin W T
Primary and secondary structural patterns in eukaryotic cytochrome P-450 families correspond to structures of the helix-rich domain of Pseudomonas putida cytochrome P-450cam. Indications for a similar overall topology.
European journal of biochemistry / FEBS 1991;198(2):307-15.
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1991: Ouzounis C; Sander C
A structure-derived sequence pattern for the detection of type I copper binding domains in distantly related proteins.
FEBS letters 1991;279(1):73-8.
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