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Nikos Kyrpides

Research Profile

Genes & Molecular Sequences

Concepts & Ideas

Occupations

Chemicals & Drugs

Procedures

Sequence Analysis, DNA

Living Beings

Phenomena

Evolution, Molecular

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Publications

TOP 3
I-Min A Chen; Ken Chu; Nikos Kyrpides; Victor M Markowitz; Konstantinos Mavromatis; Iain Anderson; Natalia N Ivanova
Improving microbial genome annotations in an integrated database context.
Senthil K Murugapiran; Ioanna Pagani; Amrita Pati; Lin Peters; Sam Pitluck; Ernest Szeto; Hazuki Teshima; Chia-Lin Wei; Tanja Woyke; Amy Chen; John C Detter; Jeremy A Dodsworth; Tracy H Erkkila; Lynne Goodwin; Cliff S Han; James Han; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Jenny Lam; Victor Markowitz; Konstantinos Mavrommatis; Austin I McDonald; Brian P Hedlund
Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.
Weibing Shi; Su Sun; Shangxian Xie; Xueyan Chen; Peng Gao; Nikos Kyrpides; Lantao Liu; En-Gyu No; Xin Zhou; Joshua S Yuan
Comparative genomic analysis of the endosymbionts of herbivorous insects reveals eco-environmental adaptations: biotechnology applications.

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All Publications

2013: I-Min A Chen; Ken Chu; Nikos Kyrpides; Victor M Markowitz; Konstantinos Mavromatis; Iain Anderson; Natalia N Ivanova
Improving microbial genome annotations in an integrated database context.
PloS one 2013;8(2):e54859.
2013: Senthil K Murugapiran; Ioanna Pagani; Amrita Pati; Lin Peters; Sam Pitluck; Ernest Szeto; Hazuki Teshima; Chia-Lin Wei; Tanja Woyke; Amy Chen; John C Detter; Jeremy A Dodsworth; Tracy H Erkkila; Lynne Goodwin; Cliff S Han; James Han; Marcel Huntemann; Natalia Ivanova; Nikos Kyrpides; Jenny Lam; Victor Markowitz; Konstantinos Mavrommatis; Austin I McDonald; Brian P Hedlund
Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.
Genome announcements 2013;1(1):.
2013: Weibing Shi; Su Sun; Shangxian Xie; Xueyan Chen; Peng Gao; Nikos Kyrpides; Lantao Liu; En-Gyu No; Xin Zhou; Joshua S Yuan
Comparative genomic analysis of the endosymbionts of herbivorous insects reveals eco-environmental adaptations: biotechnology applications.
PLoS genetics 2013;9(1):e1003131.
2012: Susan Lucas; Natalia Mikhailova; Kenneth M Noll; Phil Oger; Ioanna Pagani; Lin Peters; Sam Pitluck; Roxanne Tapia; Hazuki Teshima; Pauline Vannier; Tanja Woyke; Douglas H Bartlett; Jan-Fang Cheng; John C Detter; Lynne A Goodwin; Cliff Han; James Han; Loren Hauser; Natalia Ivanova; Nikos Kyrpides; Miriam Land; Alla Lapidus; Mohamed Jebbar
Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.
Journal of bacteriology 2012;194(21):5974-5.
2012: Andreas Desiniotis; Chris Detter; Lynne A Goodwin; Cliff Han; Vassili N Kouvelis; Nikos Kyrpides; David Bruce; Karen Davenport; Roxanne Tapia; Milton A Typas; Tanja Woyke; Katherine M Pappas
Complete genome sequence of the ethanol-producing Zymomonas mobilis subsp. mobilis centrotype ATCC 29191.
Journal of bacteriology 2012;194(21):5966-7.
2012: Konstantinos Mavromatis; Daniel J Quest; Tanja Woyke; Miriam L Land; Alla Lapidus; Thomas S Brettin; Alicia Clum; Alex Copeland; Robert W Cottingham; Lynne Goodwin; Hans Peter Klenk; Nikos Kyrpides
The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation.
PloS one 2012;7(12):e48837.
2012: Victor M Markowitz; Konstantinos Mavromatis; Ioanna Pagani; Krishna Palaniappan; Anna Ratner; Ernest Szeto; I-Min A Chen; Ken Chu; Marcel Huntemann; Natalia N Ivanova; Biju Jacob; Konstantinos Liolios; Nikos Kyrpides
IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project.
PloS one 2012;7(7):e40151.
2011: Rich Boden; Jan-Fang Cheng; Michael Cunliffe; Lynne Goodwin; Cliff Han; James Han; Loren Hauser; Natalia Ivanova; Mike S.M. Jetten; K Dimitri Kits; Martin Klotz; Nikos Kyrpides; Miriam L Land; Alla Lapidus; Susan Lucas; Natalia Mikhailova; Hélène Moussard; Ioanna Pagani; Lin Peters; Sam Pitluck; Julie Scanlan; Lisa Stein; Roxanne Tapia; Hazuki Teshima; Stéphane Vuilleumier; Tanja Woyke; J Colin Murrell
Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.
Journal of bacteriology 2011;193(24):7001-2.
2011: Dawn Field; George M Garrity; Jack Gilbert; Frank Oliver Glöckner; Lynette Hirschman; Ilene Karsch-Mizrachi; Hans-Peter Klenk; Rob Knight; Renzo Kottmann; Nikos Kyrpides; Folker Meyer; Inigo San Gil; Susanna-Assunta Sansone; Lynn M Schriml; Peter Sterk; Tatiana Tatusova; David W Ussery; Owen R White; Linda Amaral-Zettler; Guy Cochrane; James R Cole; Peter Dawyndt; John Wooley
The Genomic Standards Consortium.
PLoS biology 2011;9(6):e1001088.
2011: Norman Morrison; Goran Nenadic; Peter Sterk; Bert Verslyppe; Pelin Yilmaz; Frank Oliver Glöckner; Jeff Grethe; David Hancock; Lynette Hirschman; Renzo Kottmann; Nikos Kyrpides; Tim Booth; Peter Dawyndt; Dawn Field
Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets.
Standards in genomic sciences 2011;4(2):286-92.
2011: Amanda Birmingham; Jose C Clemente; Narayan Desai; Jack Gilbert; Antonio Gonzalez; Rob Knight; Nikos Kyrpides; Neocles B Leontis; Folker Meyer; Eric Nawrocki; Peter Sterk; Jesse Stombaugh; Zasha Weinberg; Doug Wendel; Craig Zirbel; Alain Laederach
Meeting report of the RNA Ontology Consortium January 8-9, 2011.
Standards in genomic sciences 2011;4(2):252-6.
2011: Sara E Blumer-Schuette; Inci Ozdemir; Dhaval Mistry; Susan Lucas; Alla Lapidus; Jan-Fang Cheng; Lynne A Goodwin; Samuel Pitluck; Miriam L Land; Loren J Hauser; Tanja Woyke; Natalia Mikhailova; Amrita Pati; Nikos Kyrpides; Natalia Ivanova; John C Detter; Karen Walston-Davenport; Shunsheng Han; Michael W W Adams; Robert M Kelly
Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus.
Journal of bacteriology 2011;193(6):1483-4.
2011: Steven A Frese; Andrew K Benson; Gerald W Tannock; Diane M Loach; Jaehyoung Kim; Min Zhang; Phaik Lyn Oh; Nicholas C K Heng; Prabhu B Patil; Nathalie Juge; Donald A Mackenzie; Bruce M Pearson; Alla Lapidus; Eileen Dalin; Hope Tice; Eugene Goltsman; Miriam Land; Loren Hauser; Natalia Ivanova; Nikos Kyrpides; Jens Walter
The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri.
PLoS genetics 2011;7(2):e1001314.
2011: Iain Anderson; Carmen Scheuner; Markus Göker; Kostas Mavromatis; Sean D Hooper; Iris Porat; Hans-Peter Klenk; Natalia Ivanova; Nikos Kyrpides
Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomes.
PloS one 2011;6(5):e20237.
2011: George M Garrity; Dawn Field; Nikos Kyrpides
Alive and well at 100.
Standards in genomic sciences 2011;4(1):1.
2011: Athanasios Lykidis; Chia-Lung Chen; Susannah G Tringe; Alice C McHardy; Alex Copeland; Nikos Kyrpides; Philip Hugenholtz; Hervé Macarie; Alejandro Olmos; Oscar Monroy; Wen-Tso Liu
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.
The ISME journal 2011;5(1):122-30.
2010: Christopher L Hemme; Housna Mouttaki; Yong-Jin Lee; Gengxin Zhang; Lynne Goodwin; Susan Lucas; Alex Copeland; Alla Lapidus; Tijana Glavina del Rio; Hope Tice; Elizabeth Saunders; Thomas Brettin; John C Detter; Cliff S Han; Sam Pitluck; Miriam L Land; Loren J Hauser; Nikos Kyrpides; Natalia Mikhailova; Zhili He; Liyou Wu; Joy D Van Nostrand; Bernard Henrissat; Qiang He; Paul A Lawson; Ralph S Tanner; Lee R Lynd; Juergen Wiegel; matthew w fields; Adam P Arkin; Christopher W Schadt; Bradley S Stevenson; Michael J McInerney; Yunfeng Yang; Hailiang Dong; Defeng Xing; Nanqi Ren; Aijie Wang; Raymond L Huhnke; Jonathan R Mielenz; Shi-You Ding; Michael E Himmel; Safiyh Taghavi; Daniël van der Lelie; Edward M Rubin; Jizhong Zhou
Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production.
Journal of bacteriology 2010;192(24):6494-6.
2010: Natalia Ivanova; Susannah G Tringe; Konstantinos Liolios; Wen-Tso Liu; Norman Morrison; Philip Hugenholtz; Nikos Kyrpides
A call for standardized classification of metagenome projects.
Environmental microbiology 2010;12(7):1803-5.
2010: Amrita Pati; Natalia N Ivanova; Natalia Mikhailova; Galina Ovchinnikova; Sean D Hooper; Athanasios Lykidis; Nikos Kyrpides
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.
Nature methods 2010;7(6):455-7.
2010: Karen E Nelson; George M Weinstock; Sarah Katherine Highlander; Kim C Worley; Heather Huot Creasy; Jennifer Wortman; Douglas B Rusch; Makedonka Mitreva; Erica Sodergren; Asif T Chinwalla; Michael Feldgarden; Dirk Gevers; Brian J Haas; Ramana Madupu; Doyle V Ward; Bruce W Birren; Richard A Gibbs; Barbara Methe; Joseph F Petrosino; Robert L Strausberg; Granger G Sutton; Owen R White; Richard K Wilson; Scott Durkin; Michelle G Giglio; Sharvari Gujja; Clint Howarth; Chinnappa D Kodira; Nikos Kyrpides; Teena Mehta; Donna M Muzny; Matthew Pearson; Kymberlie Pepin; Amrita Pati; Xiang Qin; Chandri Yandava; Qiandong Zeng; Lan Zhang; Aaron M Berlin; Lei Chen; Theresa A Hepburn; Justin Johnson; Jamison McCorrison; Jason Miller; Pat Minx; Chad Nusbaum; Carsten Russ; Sean M Sykes; Chad M Tomlinson; Sarah Young; Wesley C Warren; Jonathan Badger; Jonathan Crabtree; Victor M Markowitz; Joshua Orvis; Andrew Cree; Steve Ferriera; Lucinda L Fulton; Robert S Fulton; Marcus Gillis; Lisa D Hemphill; Vandita Joshi; Christie Kovar; Manolito Torralba; Kris A Wetterstrand; Amr Abouellleil; Aye M Wollam; Christian J Buhay; Yan Ding; Shannon Dugan; Michael G FitzGerald; Mike Holder; Jessica Hostetler; Sandra W Clifton; Emma Allen-Vercoe; Ashlee M Earl; Candace N Farmer; Konstantinos Liolios; Michael G Surette; Qiang Xu; Craig Pohl; Katarzyna Wilczek-Boney; Dianhui Zhu
A catalog of reference genomes from the human microbiome.
Science (New York, N.Y.) 2010;328(5981):994-9.
2010: Sean D Hooper; Daniel Dalevi; Amrita Pati; Konstantinos Mavromatis; Natalia N Ivanova; Nikos Kyrpides
Estimating DNA coverage and abundance in metagenomes using a gamma approximation.
Bioinformatics (Oxford, England) 2010;26(3):295-301.
2010: Michael Young; Vladislav Artsatbanov; Harry R Beller; Govind Chandra; Keith F Chater; Lynn G Dover; Ee-Been Goh; Tamar Kahan; Arseny S Kaprelyants; Nikos Kyrpides; Alla Lapidus; Stephen R Lowry; Athanasios Lykidis; Jacques Mahillon; Victor Markowitz; Konstantinos Mavromatis; Galina V Mukamolova; Aharon Oren; Stefan Rokem; Margaret C M Smith; Danielle I Young; Charles L Greenblatt
Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium.
Journal of bacteriology 2010;192(3):841-60.
2010: Evelyne Brambilla; Olivier Duplex Ngatchou Djao; Hajnalka Daligault; Alla Lapidus; Susan Lucas; Nancy Hammon; Matt Nolan; Hope Tice; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Stefan Spring; Johannes Sikorski; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847).
Standards in genomic sciences 2010;3(2):203-11.
2010: Johannes Sikorski; Christine Munk; Alla Lapidus; Olivier Duplex Ngatchou Djao; Susan Lucas; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Cliff Han; Jan-Fang Cheng; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; David Sims; Linda Meincke; Thomas Brettin; John C Detter; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Elke Lang; Stefan Spring; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).
Standards in genomic sciences 2010;3(2):194-202.
2010: Matt Nolan; Johannes Sikorski; Karen Davenport; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Roxanne Tapia; Thomas Brettin; John C Detter; Cliff Han; Montri Yasawong; Manfred Rohde; Brian J Tindall; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Ferrimonas balearica type strain (PAT).
Standards in genomic sciences 2010;3(2):174-82.
2010: Hajnalka Kiss; David Cleland; Alla Lapidus; Susan Lucas; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Megan Lu; Thomas Brettin; John C Detter; Markus Göker; Brian J Tindall; Brian Beck; Timothy R McDermott; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Jan-Fang Cheng
Complete genome sequence of 'Thermobaculum terrenum' type strain (YNP1).
Standards in genomic sciences 2010;3(2):153-62.
2010: Konstantinos Mavromatis; Montri Yasawong; Olga Chertkov; Alla Lapidus; Susan Lucas; Matt Nolan; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Roxanne Tapia; Cliff Han; David Bruce; Lynne Goodwin; Amrita Pati; Ami Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; John C Detter; Manfred Rohde; Evelyne Brambilla; Stefan Spring; Markus Göker; Johannes Sikorski; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228).
Standards in genomic sciences 2010;3(2):136-44.
2010: Montri Yasawong; Hazuki Teshima; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Johannes Sikorski; Rüdiger Pukall; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Arcanobacterium haemolyticum type strain (11018).
Standards in genomic sciences 2010;3(2):126-35.
2010: Konstantinos Mavromatis; Johannes Sikorski; Elke Pabst; Hazuki Teshima; Alla Lapidus; Susan Lucas; Matt Nolan; Tijana Glavina Del Rio; Jan-Fang Cheng; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Stefan Spring; Markus Göker; Reinhard Wirth; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Vulcanisaeta distributa type strain (IC-017).
Standards in genomic sciences 2010;3(2):117-25.
2010: Sam Pitluck; Montri Yasawong; Christine Munk; Matt Nolan; Alla Lapidus; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Lynne Goodwin; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Stefan Spring; Johannes Sikorski; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P).
Standards in genomic sciences 2010;3(2):108-16.
2010: Cliff Han; Wei Gu; Xiaojing Zhang; Alla Lapidus; Matt Nolan; Alex Copeland; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Roxane Tapia; Lynne Goodwin; Sam Pitluck; Ioanna Pagani; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Susanne Schneider; Manfred Rohde; Markus Göker; Rüdiger Pukall; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; John C Detter
Complete genome sequence of Thermaerobacter marianensis type strain (7p75a).
Standards in genomic sciences 2010;3(3):337-45.
2010: Hui Sun; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Roxane Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Ioanna Pagani; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Olivier Duplex Ngatchou Djao; Manfred Rohde; Johannes Sikorski; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509).
Standards in genomic sciences 2010;3(3):325-36.
2010: Iain Anderson; Olivier Duplex Ngatchou Djao; Monica Misra; Olga Chertkov; Matt Nolan; Susan Lucas; Alla Lapidus; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Evelyne Brambilla; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Johannes Sikorski; Stefan Spring; Manfred Rohde; Konrad Eichinger; Harald Huber; Reinhard Wirth; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Methanothermus fervidus type strain (V24S).
Standards in genomic sciences 2010;3(3):315-24.
2010: Johannes Sikorski; Olga Chertkov; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Roxane Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Evelyne Brambilla; Montri Yasawong; Manfred Rohde; Rüdiger Pukall; Stefan Spring; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1).
Standards in genomic sciences 2010;3(3):304-14.
2010: Tijana Glavina Del Rio; Olga Chertkov; Montri Yasawong; Susan Lucas; Shweta Deshpande; Jan-Fang Cheng; Chris Detter; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Rüdiger Pukall; Johannes Sikorski; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Intrasporangium calvum type strain (7 KIP).
Standards in genomic sciences 2010;3(3):294-303.
2010: Sam Pitluck; Montri Yasawong; Brittany Held; Alla Lapidus; Matt Nolan; Alex Copeland; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Olga Chertkov; Lynne Goodwin; Roxane Tapia; Cliff Han; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Rüdiger Pukall; Stefan Spring; Manfred Rohde; Johannes Sikorski; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3).
Standards in genomic sciences 2010;3(3):285-93.
2010: Hui Sun; Stefan Spring; Alla Lapidus; Karen Davenport; Tijana Glavina Del Rio; Hope Tice; Matt Nolan; Alex Copeland; Jan-Fang Cheng; Susan Lucas; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Ionna Pagani; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; John C Detter; Cliff Han; Manfred Rohde; Evelyne Brambilla; Markus Göker; Tanja Woyke; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Miriam Land
Complete genome sequence of Desulfarculus baarsii type strain (2st14).
Standards in genomic sciences 2010;3(3):276-84.
2010: Olivier Duplex Ngatchou Djao; Xiaojing Zhang; Susan Lucas; Alla Lapidus; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Jan-Fang Cheng; Cliff Han; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Galina Ovchinnikova; Amrita Pati; Evelyne Brambilla; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Johannes Sikorski; Stefan Spring; Markus Göker; John C Detter; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1).
Standards in genomic sciences 2010;3(3):268-75.
2010: Jack A Gilbert; Folker Meyer; Janet Jansson; Jeff Gordon; Norman Pace; James M Tiedje; Ruth Ley; Noah Fierer; Dawn Field; Nikos Kyrpides; Frank Oliver Glöckner; Hans-Peter Klenk; K Eric Wommack; Elizabeth Glass; Kathryn Docherty; Rachel Gallery; Rick Stevens; Rob Knight
The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.
Standards in genomic sciences 2010;3(3):249-53.
2010: Jack A Gilbert; Folker Meyer; Dion Antonopoulos; Pavan Balaji; C Titus Brown; Christopher T Brown; Narayan Desai; Jonathan Eisen; Dirk Evers; Dawn Field; Wu Feng; Daniel Huson; Janet Jansson; Rob Knight; James Knight; Eugene Kolker; Kostas Konstantindis; Joel Kostka; Nikos Kyrpides; Rachel Mackelprang; Alice McHardy; Christopher Quince; Jeroen Raes; Alexander Sczyrba; Ashley Shade; Rick Stevens
Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.
Standards in genomic sciences 2010;3(3):243-8.
2010: Owen R White; Nikos Kyrpides
Meeting Report: Towards a Critical Assessment of Functional Annotation Experiment (CAFAE) for bacterial genome annotation.
Standards in genomic sciences 2010;3(3):240-2.
2010: Jack A Gilbert; Folker Meyer; Rob Knight; Dawn Field; Nikos Kyrpides; Pelin Yilmaz; John Wooley
Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010.
Standards in genomic sciences 2010;3(3):235-9.
2010: Elizabeth Glass; Folker Meyer; Jack A Gilbert; Dawn Field; Sarah Hunter; Renzo Kottmann; Nikos Kyrpides; Susanna Sansone; Lynn M Schriml; Peter Sterk; Owen R White; John Wooley
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10.
Standards in genomic sciences 2010;3(3):225-31.
2010: Tanja Davidsen; Ramana Madupu; Peter Sterk; Dawn Field; George M Garrity; Jack Gilbert; Frank Oliver Glöckner; Lynette Hirschman; Eugene Kolker; Renzo Kottmann; Nikos Kyrpides; Folker Meyer; Norman Morrison; Lynn M Schriml; Tatiana Tatusova; John Wooley
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9.
Standards in genomic sciences 2010;3(3):216-24.
2010: Alex Copeland; Johannes Sikorski; Alla Lapidus; Matt Nolan; Tijana Glavina; Susan Lucas; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Rüdiger Pukall; Olga Chertkov; Thomas Brettin; Cliff Han; Cheryl Kuske; David Bruce; Lynne Goodwin; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Patrick Chain; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; John C Detter
Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246).
Standards in genomic sciences 2010;2(3):361-2.
2010: Lynette Hirschman; Peter Sterk; Dawn Field; John Wooley; Guy Cochrane; Jack Gilbert; Eugene Kolker; Nikos Kyrpides; Folker Meyer; Ilene Mizrachi; Yasukazu Nakamura; Susanna-Assunta Sansone; Lynn M Schriml; Tatiana Tatusova; Owen R White; Pelin Yilmaz
Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.
Standards in genomic sciences 2010;2(3):357-60.
2010: Wayne Reeve; Graham O'Hara; Patrick Chain; Julie Ardley; Lambert Bräu; Kemanthi Nandesena; Ravi Tiwari; Alex Copeland; Matt Nolan; Cliff Han; Thomas Brettin; Miriam Land; Galina Ovchinikova; Natalia Ivanova; Konstantinos Mavromatis; Victor Markowitz; Nikos Kyrpides; Vanessa Melino; Matthew Denton; Ron Yates; John Howieson
Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers.
Standards in genomic sciences 2010;2(3):347-56.
2010: Mathias von Jan; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; Lynne Goodwin; Cliff Han; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Olga Chertkov; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Elizabeth Saunders; Thomas Brettin; John C Detter; Patrick Chain; Konrad Eichinger; Harald Huber; Stefan Spring; Manfred Rohde; Markus Göker; Reinhard Wirth; Tanja Woyke; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Archaeoglobus profundus type strain (AV18).
Standards in genomic sciences 2010;2(3):327-46.
2010: Konstantinos Liolios; Johannes Sikorski; Marlen Jando; Alla Lapidus; Alex Copeland; Tijana Glavina; Matt Nolan; Susan Lucas; Hope Tice; Jan-Fang Cheng; Cliff Han; Tanja Woyke; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Olga Chertkov; Cheryl Kuske; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Thermobispora bispora type strain (R51).
Standards in genomic sciences 2010;2(3):318-26.
2010: Amrita Pati; Sabine Gronow; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Hope Tice; Jan-Fang Cheng; Cliff Han; Olga Chertkov; David Bruce; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; John C Detter; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Arcobacter nitrofigilis type strain (CI).
Standards in genomic sciences 2010;2(3):300-8.
2010: Konstantinos Mavromatis; Birte Abt; Evelyne Brambilla; Alla Lapidus; Alex Copeland; Shweta Deshpande; Matt Nolan; Susan Lucas; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; Tanja Woyke; Lynne Goodwin; Sam Pitluck; Brittany Held; Thomas Brettin; Roxanne Tapia; Natalia Ivanova; Natalia Mikhailova; Amrita Pati; Konstantinos Liolios; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24).
Standards in genomic sciences 2010;2(3):290-9.
2010: Olga Chertkov; Johannes Sikorski; Evelyne Brambilla; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; David Bruce; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Stefan Spring; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1).
Standards in genomic sciences 2010;2(3):280-9.
2010: Hajnalka Kiss; Elke Lang; Alla Lapidus; Alex Copeland; Matt Nolan; Tijana Glavina Del Rio; Feng Chen; Susan Lucas; Hope Tice; Jan-Fang Cheng; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; John C Detter; Thomas Brettin; Stefan Spring; Manfred Rohde; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460).
Standards in genomic sciences 2010;2(3):270-9.
2010: Amrita Pati; Johannes Sikorski; Sabine Gronow; Christine Munk; Alla Lapidus; Alex Copeland; Tijana Glavina Del Tio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; David Bruce; Roxanne Tapia; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Stefan Spring; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Brachyspira murdochii type strain (56-150).
Standards in genomic sciences 2010;2(3):260-9.
2010: Stefan Spring; Reinhard Rachel; Alla Lapidus; Karen Davenport; Hope Tice; Alex Copeland; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia C Jeffries; Thomas Brettin; John C Detter; Roxanne Tapia; Cliff Han; Thomas Heimerl; Fabian Weikl; Evelyne Brambilla; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Thermosphaera aggregans type strain (M11TL).
Standards in genomic sciences 2010;2(3):245-59.
2010: Alicia Clum; Brian J Tindall; Johannes Sikorski; Natalia Ivanova; Konstantinos Mavromatis; Susan Lucas; Tijana Glavina Del Rio; Matt Nolan; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Olga Chertkov; Thomas Brettin; Cliff Han; John C Detter; Cheryl Kuske; David Bruce; Lynne Goodwin; Galina Ovchinikova; Amrita Pati; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377).
Standards in genomic sciences 2010;2(2):228-88.
2010: Miranda Harmon-Smith; Laura Celia; Olga Chertkov; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; David Bruce; Lynne Goodwin; Sam Pitluck; Amrita Pati; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; Markus Göker; Brian Beck; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Feng Chen
Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).
Standards in genomic sciences 2010;2(2):220-7.
2010: Rüdiger Pukall; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Mavromatis; Natalia Ivanova; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Linda Meincke; David Sims; Thomas Brettin; John C Detter; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Nikos Kyrpides; Hans-Peter Klenk; Philip Hugenholtz
Complete genome sequence of Conexibacter woesei type strain (ID131577).
Standards in genomic sciences 2010;2(2):212-9.
2010: Johannes Sikorski; Alla Lapidus; Alex Copeland; Monica Misra; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Marlen Jando; Susanne Schneider; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Mikhailova; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Olga Chertkov; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; John C Detter; Cliff Han; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076).
Standards in genomic sciences 2010;2(2):203-11.
2010: Reinhard Wirth; Johannes Sikorski; Evelyne Brambilla; Monica Misra; Alla Lapidus; Alex Copeland; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; Roxane Tapia; David Bruce; Lynne Goodwin; Sam Pitluck; Amrita Pati; Iain Anderson; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Yvonne Bilek; Thomas Hader; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Brian J Tindall; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Thermocrinis albus type strain (HI 11/12).
Standards in genomic sciences 2010;2(2):194-202.
2010: Rüdiger Pukall; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; Kurt Labutti; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Sam Pitluck; David Bruce; Lynne Goodwin; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Amy Chen; Krishna Palaniappan; Patrick Chain; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Thomas Brettin
Complete genome sequence of Kribbella flavida type strain (IFO 14399).
Standards in genomic sciences 2010;2(2):186-93.
2010: Kathleen Lail; Johannes Sikorski; Elizabeth Saunders; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Thomas Brettin; John C Detter; Andrea Schütze; Manfred Rohde; Brian J Tindall; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Feng Chen
Complete genome sequence of Spirosoma linguale type strain (1).
Standards in genomic sciences 2010;2(2):176-85.
2010: Hope Tice; Shanmugam Mayilraj; David Sims; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Alex Copeland; Jan-Fang Cheng; Linda Meincke; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Feng Chen
Complete genome sequence of Nakamurella multipartita type strain (Y-104).
Standards in genomic sciences 2010;2(2):168-75.
2010: Natalia Ivanova; Johannes Sikorski; Marlen Jando; Christine Munk; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Linda Meincke; Thomas Brettin; John C Detter; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Geodermatophilus obscurus type strain (G-20).
Standards in genomic sciences 2010;2(2):158-67.
2010: Johannes Sikorski; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Elizabeth Saunders; David Bruce; Lynne Goodwin; Sam Pitluck; Galina Ovchinnikova; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Patrick Chain; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; John C Detter; Cliff Han; Manfred Rohde; Elke Lang; Stefan Spring; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Sulfurospirillum deleyianum type strain (5175).
Standards in genomic sciences 2010;2(2):149-57.
2010: Nikos Kyrpides; Dawn Field; Peter Sterk; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; Guy Cochrane; John Wooley
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8.
Standards in genomic sciences 2010;3(1):93-6.
2010: Kurt Labutti; Shanmugam Mayilraj; Alicia Clum; Susan Lucas; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Jan-Fang Cheng; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Lynne Goodwin; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Stefan Spring; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 4207).
Standards in genomic sciences 2010;3(1):85-92.
2010: Markus Göker; Brittany Held; Susan Lucas; Matt Nolan; Montri Yasawong; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; David Bruce; John C Detter; Roxanne Tapia; Cliff Han; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Johannes Sikorski; Rüdiger Pukall; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Olsenella uli type strain (VPI D76D-27C).
Standards in genomic sciences 2010;3(1):76-84.
2010: Markus Göker; Brittany Held; Alla Lapidus; Matt Nolan; Stefan Spring; Montri Yasawong; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Lynne Goodwin; Roxanne Tapia; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Evelyne Brambilla; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; John C Detter; Cliff Han; Manfred Rohde; Johannes Sikorski; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1).
Standards in genomic sciences 2010;3(1):66-75.
2010: Johannes Sikorski; Alla Lapidus; Olga Chertkov; Susan Lucas; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Jan-Fang Cheng; Cliff Han; Evelyne Brambilla; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; David Bruce; Chris Detter; Roxanne Tapia; Lynne Goodwin; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Markus Göker; Stefan Spring; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288).
Standards in genomic sciences 2010;3(1):57-65.
2010: Kurt Labutti; Johannes Sikorski; Susanne Schneider; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Lynne Goodwin; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Brian J Tindall; Manfred Rohde; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Planctomyces limnophilus type strain (Mü 290).
Standards in genomic sciences 2010;3(1):47-56.
2010: Johannes Sikorski; Brian J Tindall; Stephen Lowry; Susan Lucas; Matt Nolan; Alex Copeland; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Cliff Han; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Lynne Goodwin; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Meiothermus silvanus type strain (VI-R2).
Standards in genomic sciences 2010;3(1):37-46.
2010: Brian J Tindall; Johannes Sikorski; Susan Lucas; Eugene Goltsman; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Jan-Fang Cheng; Cliff Han; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Regine Fähnrich; Lynne Goodwin; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Meiothermus ruber type strain (21).
Standards in genomic sciences 2010;3(1):26-36.
2010: Birte Abt; Brian Foster; Alla Lapidus; Alicia Clum; Hui Sun; Rüdiger Pukall; Susan Lucas; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Jan-Fang Cheng; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Lynne Goodwin; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Markus Göker; Tanja Woyke; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Cellulomonas flavigena type strain (134).
Standards in genomic sciences 2010;3(1):15-25.
2010: Yun-Juan Chang; Rüdiger Pukall; Elizabeth Saunders; Alla Lapidus; Alex Copeland; Matt Nolan; Tijana Glavina Del Rio; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Mikhailova; Konstantinos Liolios; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Cynthia D Jeffries; Thomas Brettin; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Acidaminococcus fermentans type strain (VR4).
Standards in genomic sciences 2010;3(1):1-14.
2010: Elisabeth Saunders; Brian J Tindall; Regine Fähnrich; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; David Bruce; Lynne Goodwin; Patrick Chain; Sam Pitluck; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; Manfred Rohde; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Haloterrigena turkmenica type strain (4k).
Standards in genomic sciences 2010;2(1):107-16.
2010: Natalia Ivanova; Chris Daum; Elke Lang; Birte Abt; Markus Kopitz; Elizabeth Saunders; Alla Lapidus; Susan Lucas; Tijana Glavina Del Rio; Matt Nolan; Hope Tice; Alex Copeland; Jan-Fang Cheng; Feng Chen; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Mavromatis; Amrita Pati; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Jim Bristow; Victor Markowitz; Jonathan Eisen; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Haliangium ochraceum type strain (SMP-2).
Standards in genomic sciences 2010;2(1):96-106.
2010: Tijana Glavina Del Rio; Birte Abt; Stefan Spring; Alla Lapidus; Matt Nolan; Hope Tice; Alex Copeland; Jan-Fang Cheng; Feng Chen; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Susan Lucas
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).
Standards in genomic sciences 2010;2(1):87-95.
2010: Wayne Reeve; Patrick Chain; Graham O'Hara; Julie Ardley; Kemanthi Nandesena; Lambert Bräu; Ravi Tiwari; Stephanie Malfatti; Hajnalka Kiss; Alla Lapidus; Alex Copeland; Matt Nolan; Miriam Land; Loren Hauser; Yun-Juan Chang; Natalia Ivanova; Konstantinos Mavromatis; Victor Markowitz; Nikos Kyrpides; Margaret Gollagher; Ron Yates; Michael Dilworth; John Howieson
Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419.
Standards in genomic sciences 2010;2(1):77-86.
2010: Wayne Reeve; Graham O'Hara; Patrick Chain; Julie Ardley; Lambert Bräu; Kemanthi Nandesena; Ravi Tiwari; Stephanie Malfatti; Hajnalka Kiss; Alla Lapidus; Alex Copeland; Matt Nolan; Miriam Land; Natalia Ivanova; Konstantinos Mavromatis; Victor Markowitz; Nikos Kyrpides; Vanessa Melino; Matthew Denton; Ron Yates; John Howieson
Complete genome sequence of Rhizobium leguminosarum bv trifolii strain WSM2304, an effective microsymbiont of the South American clover Trifolium polymorphum.
Standards in genomic sciences 2010;2(1):66-76.
2010: Sabine Gronow; Sabine Welnitz; Alla Lapidus; Matt Nolan; Natalia Ivanova; Tijana Glavina Del Rio; Alex Copeland; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Elizabeth Saunders; Thomas Brettin; Cliff Han; John C Detter; David Bruce; Lynne Goodwin; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Amrita Pati; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Patrick Chain; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Susan Lucas
Complete genome sequence of Veillonella parvula type strain (Te3).
Standards in genomic sciences 2010;2(1):57-65.
2010: Amrita Pati; Kurt Labutti; Rüdiger Pukall; Matt Nolan; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Alex Copeland; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Sam Pitluck; David Bruce; Lynne Goodwin; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Amy Chen; Krishna Palaniappan; Patrick Chain; Thomas Brettin; Johannes Sikorski; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022).
Standards in genomic sciences 2010;2(1):49-56.
2010: Stefan Spring; Matt Nolan; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Miriam Land; Feng Chen; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Christine Munk; Hajnalka Kiss; Patrick Chain; Cliff Han; Thomas Brettin; John C Detter; Esther Schüler; Markus Göker; Manfred Rohde; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Desulfohalobium retbaense type strain (HR(100)).
Standards in genomic sciences 2010;2(1):38-48.
2010: Matt Nolan; Johannes Sikorski; Marlen Jando; Susan Lucas; Alla Lapidus; Tijana Glavina Del Rio; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Olga Chertkov; David Sims; Linda Meincke; Thomas Brettin; Cliff Han; John C Detter; David Bruce; Lynne Goodwin; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Patrick Chain; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Streptosporangium roseum type strain (NI 9100).
Standards in genomic sciences 2010;2(1):29-37.
2010: Natalia Ivanova; Johannes Sikorski; Marlen Jando; Alla Lapidus; Matt Nolan; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Alex Copeland; Jan-Fang Cheng; Feng Chen; David Bruce; Lynne Goodwin; Sam Pitluck; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; Cliff Han; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Gordonia bronchialis type strain (3410).
Standards in genomic sciences 2010;2(1):19-28.
2010: Konstantinos Mavromatis; Johannes Sikorski; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Linda Meincke; David Sims; Olga Chertkov; Cliff Han; Thomas Brettin; John C Detter; Claudia Wahrenburg; Manfred Rohde; Rüdiger Pukall; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides
Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA).
Standards in genomic sciences 2010;2(1):9-18.
2010: Brian Foster; Rüdiger Pukall; Birte Abt; Matt Nolan; Tijana Glavina Del Rio; Feng Chen; Susan Lucas; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Olga Chertkov; Thomas Brettin; Cliff Han; John C Detter; David Bruce; Lynne Goodwin; Natalia Ivanova; Konstantinos Mavromatis; Amrita Pati; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07).
Standards in genomic sciences 2010;2(1):1-8.
2010: Stefan Spring; Carmen Scheuner; Alla Lapidus; Susan Lucas; Tijana Glavina Del Rio; Hope Tice; Alex Copeland; Jan-Fang Cheng; Feng Chen; Matt Nolan; Elizabeth Saunders; Sam Pitluck; Konstantinos Liolios; Natalia Ivanova; Konstantinos Mavromatis; Athanasios Lykidis; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Lynne Goodwin; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Tanja Woyke; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments.
Archaea (Vancouver, B.C.) 2010;2010():690737.
2010: Athanasios Lykidis; Danilo Pérez-Pantoja; Thomas Ledger; Kostantinos Mavromatis; Iain J Anderson; Natalia N Ivanova; Sean D Hooper; Alla Lapidus; Susan Lucas; Bernardo González; Nikos Kyrpides
The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader.
PloS one 2010;5(3):e9729.
2010: Konstantinos Liolios; I-Min A Chen; Konstantinos Mavromatis; Nektarios Tavernarakis; Philip Hugenholtz; Victor M Markowitz; Nikos Kyrpides
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.
Nucleic acids research 2010;38(Database issue):D346-54.
2010: Victor M Markowitz; I-Min A Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Yuri Grechkin; Anna Ratner; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia N Ivanova; Nikos Kyrpides
The integrated microbial genomes system: an expanding comparative analysis resource.
Nucleic acids research 2010;38(Database issue):D382-90.
2010: Irene Wagner-Döbler; Britta Ballhausen; Martine Berger; Thorsten Brinkhoff; Ina Buchholz; Boyke Bunk; Heribert Cypionka; Rolf Daniel; Thomas Drepper; Gunnar Gerdts; Sarah Hahnke; Cliff Han; Dieter Jahn; Daniela Kalhoefer; Hajnalka Kiss; Hans-Peter Klenk; Nikos Kyrpides; Wolfgang Liebl; Heiko Liesegang; Linda Meincke; Amrita Pati; Jörn Petersen; Tanja Piekarski; Claudia Pommerenke; Silke Pradella; Rüdiger Pukall; Ralf Rabus; Erko Stackebrandt; Sebastian Thole; Linda Thompson; Petra Tielen; Jürgen Tomasch; Mathias von Jan; Nittaya Wanphrut; Antje Wichels; Hajo Zech; Meinhard Simon
The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea.
The ISME journal 2010;4(1):61-77.
2009: Dongying Wu; Philip Hugenholtz; Konstantinos Mavromatis; Rüdiger Pukall; Eileen Dalin; Natalia N Ivanova; Victor Kunin; Lynne Goodwin; Martin Wu; Brian J Tindall; Sean D Hooper; Amrita Pati; Athanasios Lykidis; Stefan Spring; Iain J Anderson; Patrik D'haeseleer; Adam Zemla; Mitchell Singer; Alla Lapidus; Matt Nolan; Alex Copeland; Cliff Han; Feng Chen; Jan-Fang Cheng; Susan Lucas; Cheryl Kerfeld; Elke Lang; Sabine Gronow; Patrick Chain; David Bruce; Edward M Rubin; Nikos Kyrpides; Hans-Peter Klenk; Jonathan Eisen
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Nature 2009;462(7276):1056-60.
2009: P S G Chain; D V Grafham; R S Fulton; M G Fitzgerald; J Hostetler; D Muzny; J Ali; B Birren; D C Bruce; C Buhay; J R Cole; Y Ding; S Dugan; D Field; George M Garrity; R Gibbs; T Graves; C S Han; S H Harrison; S Highlander; P Hugenholtz; H M Khouri; C D Kodira; E Kolker; Nikos Kyrpides; D Lang; A Lapidus; S A Malfatti; V Markowitz; T Metha; K E Nelson; J Parkhill; S Pitluck; X Qin; T D Read; J Schmutz; S Sozhamannan; P Sterk; R L Strausberg; G Sutton; N R Thomson; James M Tiedje; G Weinstock; A Wollam; J C Detter
Genomics. Genome project standards in a new era of sequencing.
Science (New York, N.Y.) 2009;326(5950):236-7.
2009: Federico M Lauro; Diane McDougald; Torsten Thomas; Timothy J Williams; Suhelen Egan; Scott Rice; Matthew Z DeMaere; Lily Ting; Haluk Ertan; Justin Johnson; Steve Ferriera; Alla Lapidus; Iain Anderson; Nikos Kyrpides; A Christine Munk; Chris Detter; Cliff S Han; Mark V Brown; Frank Thomson Robb; Staffan Kjelleberg; Ricardo Cavicchioli
The genomic basis of trophic strategy in marine bacteria.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(37):15527-33.
2009: Ewan Birney; Thomas J Hudson; Eric D Green; Chris Gunter; Sean Eddy; Jane Rogers; Jennifer R Harris; S Dusko Ehrlich; Rolf Apweiler; Christopher P Austin; Lisa Berglund; Martin Bobrow; Chas Bountra; Anthony J Brookes; Anne Cambon-Thomsen; Nigel P Carter; Rex Chisholm; Jorge L Contreras; Robert M Cooke; William L Crosby; Ken Dewar; Richard Durbin; Stephanie O M Dyke; Joseph R Ecker; Khaled El Emam; Lars Feuk; Stacey B Gabriel; John Gallacher; William M Gelbart; Antoni Granell; Francisco Guarner; Tim Hubbard; Scott A Jackson; Jennifer L Jennings; Yann Joly; Steven M Jones; Jane Kaye; Karen L Kennedy; Bartha Maria Knoppers; Nikos Kyrpides; William W Lowrance; Jingchu Luo; John J MacKay; Luis Martín-Rivera; W Richard McCombie; John D McPherson; Linda Miller; Webb Miller; Don Moerman; Vincent Mooser; Cynthia C Morton; James M Ostell; B F Francis Ouellette; Julian Parkhill; Parminder S Raina; Christopher Rawlings; Steven E Scherer; Stephen W Scherer; Paul N Schofield; Christoph Wilhelm Sensen; Victoria C Stodden; Michael R Sussman; Toshihiro Tanaka; Janet Thornton; Tatsuhiko Tsunoda; David Valle; Eero I Vuorio; Neil M Walker; Susan Wallace; George Weinstock; William B Whitman; Kim C Worley; Cathy Wu; Jiayan Wu; Jun Yu
Prepublication data sharing.
Nature 2009;461(7261):168-70.
2009: Victor M Markowitz; Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ken Chu; Nikos Kyrpides
IMG ER: a system for microbial genome annotation expert review and curation.
Bioinformatics (Oxford, England) 2009;25(17):2271-8.
2009: Nikos Kyrpides
Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream.
Nature biotechnology 2009;27(7):627-32.
2009: Philip Hugenholtz; Sean D Hooper; Nikos Kyrpides
Focus: Synergistetes.
Environmental microbiology 2009;11(6):1327-9.
2009: Sean D Hooper; Iain J Anderson; Amrita Pati; Daniel Dalevi; Konstantinos Mavromatis; Nikos Kyrpides
Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach.
Nucleic acids research 2009;37(7):2096-104.
2009: Philip Hugenholtz; Nikos Kyrpides
A changing of the guard.
Environmental microbiology 2009;11(3):551-3.
2009: Alicia Clum; Brian J Tindall; Johannes Sikorski; Natalia Ivanova; Konstantinos Mavrommatis; Susan Lucas; Tijana Glavina; Matt Nolan; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Olga Chertkov; Thomas Brettin; Cliff Han; John C Detter; Cheryl Kuske; David Bruce; Lynne Goodwin; Galina Ovchinikova; Amrita Pati; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Pirellula staleyi type strain (ATCC 27377).
Standards in genomic sciences 2009;1(3):308-16.
2009: Matt Nolan; Sabine Gronow; Alla Lapidus; Natalia Ivanova; Alex Copeland; Susan Lucas; Tijana Glavina Del Rio; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; David Sims; Linda Meincke; David Bruce; Lynne Goodwin; Thomas Brettin; Cliff Han; John C Detter; Galina Ovchinikova; Amrita Pati; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Manfred Rohde; Cathrin Spröer; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Patrick Chain
Complete genome sequence of Streptobacillus moniliformis type strain (9901).
Standards in genomic sciences 2009;1(3):300-7.
2009: Matt Nolan; Brian J Tindall; Helga Pomrenke; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Elizabeth Saunders; Cliff Han; David Bruce; Lynne Goodwin; Patrick Chain; Sam Pitluck; Galina Ovchinikova; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; John C Detter
Complete genome sequence of Rhodothermus marinus type strain (R-10).
Standards in genomic sciences 2009;1(3):283-90.
2009: Brian J Tindall; Susanne Schneider; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Elizabeth Saunders; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Mikhailova; Amrita Pati; Natalia Ivanova; Konstantinos Mavrommatis; Amy Chen; Krishna Palaniappan; Patrick Chain; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Thomas Brettin; Cliff Han; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Hans-Peter Klenk; Nikos Kyrpides; John C Detter
Complete genome sequence of Halomicrobium mukohataei type strain (arg-2).
Standards in genomic sciences 2009;1(3):270-7.
2009: Rüdiger Pukall; Gabriele Gehrich-Schröter; Alla Lapidus; Matt Nolan; Tijana Glavina Del Rio; Susan Lucas; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Alex Copeland; Elizabeth Saunders; Thomas Brettin; John C Detter; David Bruce; Lynne Goodwin; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Cliff Han
Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134).
Standards in genomic sciences 2009;1(3):262-9.
2009: Mansi Chovatia; Johannes Sikorski; Maren Schröder; Alla Lapidus; Matt Nolan; Hope Tice; Tijana Glavina Del Rio; Alex Copeland; Jan-Fang Cheng; Susan Lucas; Feng Chen; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; John C Detter; Thomas Brettin; Manfred Rohde; Markus Göker; Stefan Spring; Jim Bristow; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Jonathan Eisen
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).
Standards in genomic sciences 2009;1(3):254-61.
2009: Stefan Spring; Alla Lapidus; Maren Schröder; Dorothea Gleim; David Sims; Linda Meincke; Tijana Glavina Del Rio; Hope Tice; Alex Copeland; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; Thomas Brettin; John C Detter; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Cliff Han
Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575).
Standards in genomic sciences 2009;1(3):242-53.
2009: Rüdiger Pukall; Alla Lapidus; Matt Nolan; Alex Copeland; Tijana Glavina Del Rio; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Olga Chertkov; David Bruce; Lynne Goodwin; Cheryl Kuske; Thomas Brettin; John C Detter; Cliff Han; Sam Pitluck; Amrita Pati; Konstantinos Mavrommatis; Natalia Ivanova; Galina Ovchinnikova; Amy Chen; Krishna Palaniappan; Susanne Schneider; Manfred Rohde; Patrick Chain; Patrik D'haeseleer; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Nikos Kyrpides; Hans-Peter Klenk; Philip Hugenholtz
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1).
Standards in genomic sciences 2009;1(3):234-41.
2009: Chris Munk; Alla Lapidus; Alex Copeland; Marlen Jando; Shanmugam Mayilraj; Tijana Glavina Del Rio; Matt Nolan; Feng Chen; Susan Lucas; Hope Tice; Jan-Fang Cheng; Cliff Han; John C Detter; David Bruce; Lynne Goodwin; Patrick Chain; Sam Pitluck; Markus Göker; Galina Ovchinikova; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21).
Standards in genomic sciences 2009;1(3):234-41.
2009: Cliff Han; Johannes Sikorski; Alla Lapidus; Matt Nolan; Tijana Glavina Del Rio; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Alex Copeland; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; David Bruce; Lynne Goodwin; Sam Pitluck; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; Thomas Brettin; Markus Göker; Brian J Tindall; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; John C Detter
Complete genome sequence of Kangiella koreensis type strain (SW-125).
Standards in genomic sciences 2009;1(3):226-33.
2009: Iain Anderson; Brian J Tindall; Helga Pomrenke; Markus Göker; Alla Lapidus; Matt Nolan; Alex Copeland; Tijana Glavina Del Rio; Feng Chen; Hope Tice; Jan-Fang Cheng; Susan Lucas; Olga Chertkov; David Bruce; Thomas Brettin; John C Detter; Cliff Han; Lynne Goodwin; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Sam Pitluck; Amrita Pati; Konstantinos Mavromatis; Natalia Ivanova; Galina Ovchinnikova; Amy Chen; Krishna Palaniappan; Patrick Chain; Manfred Rohde; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Halorhabdus utahensis type strain (AX-2).
Standards in genomic sciences 2009;1(3):218-25.
2009: Iain J Anderson; Magdalena Sieprawska-Lupa; Eugene Goltsman; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Hope Tice; Eileen Dalin; Kerrie Barry; Sam Pitluck; Loren Hauser; Miriam Land; Susan Lucas; Paul Richardson; William B Whitman; Nikos Kyrpides
Complete genome sequence of Methanocorpusculum labreanum type strain Z.
Standards in genomic sciences 2009;1(2):197-203.
2009: Iain J Anderson; Magdalena Sieprawska-Lupa; Alla Lapidus; Matt Nolan; Alex Copeland; Tijana Glavina Del Rio; Hope Tice; Eileen Dalin; Kerrie Barry; Elizabeth Saunders; Cliff Han; Thomas Brettin; John C Detter; David Bruce; Natalia Mikhailova; Sam Pitluck; Loren Hauser; Miriam Land; Susan Lucas; Paul Richardson; William B Whitman; Nikos Kyrpides
Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1.
Standards in genomic sciences 2009;1(2):189-96.
2009: Iain J Anderson; Hui Sun; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Hope Tice; Eileen Dalin; Susan Lucas; Kerrie Barry; Miriam Land; Paul Richardson; Harald Huber; Nikos Kyrpides
Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1.
Standards in genomic sciences 2009;1(2):183-8.
2009: Elizabeth Saunders; Rüdiger Pukall; Birte Abt; Alla Lapidus; Tijana Glavina Del Rio; Alex Copeland; Hope Tice; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Linda Meincke; David Sims; Thomas Brettin; John C Detter; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Cliff Han
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).
Standards in genomic sciences 2009;1(2):174-82.
2009: Alex Copeland; Johannes Sikorski; Alla Lapidus; Matt Nolan; Tijana Glavina Del Rio; Susan Lucas; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Rüdiger Pukall; Olga Chertkov; Thomas Brettin; Cliff Han; John C Detter; Cheryl Kuske; David Bruce; Lynne Goodwin; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Amy Chen; Krishna Palaniappan; Patrick Chain; Manfred Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; John C Detter
Complete genome sequence of Atopobium parvulum type strain (IPP 1246).
Standards in genomic sciences 2009;1(2):166-73.
2009: Kurt Labutti; Rudiger Pukall; Katja Steenblock; Tijana Glavina Del Rio; Hope Tice; Alex Copeland; Jan-Fang Cheng; Susan Lucas; Feng Chen; Matt Nolan; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Ivanova; Konstantinos Mavromatis; Galina Ovchinnikova; Amrita Pati; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Elizabeth Saunders; Thomas Brettin; John C Detter; Cliff Han; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Alla Lapidus
Complete genome sequence of Anaerococcus prevotii type strain (PC1).
Standards in genomic sciences 2009;1(2):159-65.
2009: Stephanie Malfatti; Brian J Tindall; Susanne Schneider; Regine Fähnrich; Alla Lapidus; Kurt Labuttii; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Feng Chen; Susan Lucas; Hope Tice; Jan-Fang Cheng; David Bruce; Lynne Goodwin; Sam Pitluck; Iain Anderson; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Patrik D'haeseleer; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk; Patrick Chain
Complete genome sequence of Halogeometricum borinquense type strain (PR3).
Standards in genomic sciences 2009;1(2):150-9.
2009: Amrita Pati; Johannes Sikorski; Matt Nolan; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Susan Lucas; Feng Chen; Hope Tice; Sam Pitluck; Jan-Fang Cheng; Olga Chertkov; Thomas Brettin; Cliff Han; John C Detter; Cheryl Kuske; David Bruce; Lynne Goodwin; Patrick Chain; Patrik D'haeseleer; Amy Chen; Krishna Palaniappan; Natalia Ivanova; Konstantinos Mavromatis; Natalia Mikhailova; Manfred Rohde; Brian J Tindall; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Saccharomonospora viridis type strain (P101).
Standards in genomic sciences 2009;1(2):141-9.
2009: Elke Lang; Alla Lapidus; Olga Chertkov; Thomas Brettin; John C Detter; Cliff Han; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Feng Chen; Susan Lucas; Hope Tice; Jan-Fang Cheng; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Marcus Kopitz; David Bruce; Lynne Goodwin; Sam Pitluck; Galina Ovchinnikova; Amrita Pati; Natalia Ivanova; Konstantinos Mavrommatis; Amy Chen; Krishna Palaniappan; Patrick Chain; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Markus Göker; Manfred Rohde; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Dyadobacter fermentans type strain (NS114).
Standards in genomic sciences 2009;1(2):133-40.
2009: Natalia Ivanova; Sabine Gronow; Alla Lapidus; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; Elizabeth Saunders; David Bruce; Lynne Goodwin; Thomas Brettin; John C Detter; Cliff Han; Sam Pitluck; Natalia Mikhailova; Amrita Pati; Konstantinos Mavrommatis; Amy Chen; Krishna Palaniappan; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Patrick Chain; Christine Rohde; Markus Göker; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Leptotrichia buccalis type strain (C-1013-b).
Standards in genomic sciences 2009;1(2):126-32.
2009: Alex Copeland; Alla Lapidus; Tijana Glavina Del Rio; Matt Nolan; Susan Lucas; Feng Chen; Hope Tice; Jan-Fang Cheng; David Bruce; Lynne Goodwin; Sam Pitluck; Natalia Mikhailova; Amrita Pati; Natalia Ivanova; Konstantinos Mavromatis; Amy Chen; Krishna Palaniappan; Patrick Chain; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Olga Chertkov; Thomas Brettin; John C Detter; Cliff Han; Zahid Ali; Brian J Tindall; Markus Göker; James Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).
Standards in genomic sciences 2009;1(2):119-25.
2009: Dawn Field; Peter Sterk; Nikos Kyrpides; Renzo Kottmann; Frank Oliver Glöckner; Lynette Hirschman; George M Garrity; John Wooley; Paul Gilna
Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7.
Standards in genomic sciences 2009;1(1):68-71.
2009: Konstantinos Mavromatis; Natalia N Ivanova; I-Min A Chen; Ernest Szeto; Victor M Markowitz; Nikos Kyrpides
The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes.
Standards in genomic sciences 2009;1(1):63-7.
2009: Alla Lapidus; Rüdiger Pukall; Kurt Labuttii; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Feng Chen; Susan Lucas; Hope Tice; Jan-Fang Cheng; David Bruce; Lynne Goodwin; Sam Pitluck; Manfred Rohde; Markus Göker; Amrita Pati; Natalia Ivanova; Konstantinos Mavrommatis; Amy Chen; Krishna Palaniappan; Patrik D'haeseleer; Patrick Chain; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).
Standards in genomic sciences 2009;1(1):3-11.
2009: Konstantinos Mavromatis; Ken Chu; Natalia Ivanova; Sean D Hooper; Victor M Markowitz; Nikos Kyrpides
Gene context analysis in the Integrated Microbial Genomes (IMG) data management system.
PloS one 2009;4(11):e7979.
2009: Iain Anderson; Luke E Ulrich; Boguslaw Lupa; Dwi Susanti; Iris Porat; Sean D Hooper; Athanasios Lykidis; Magdalena Sieprawska-Lupa; Lakshmi Dharmarajan; Eugene Goltsman; Alla Lapidus; Elizabeth Saunders; Cliff Han; Miriam Land; Susan Lucas; Biswarup Mukhopadhyay; William B Whitman; Carl Woese; James Bristow; Nikos Kyrpides
Genomic characterization of methanomicrobiales reveals three classes of methanogens.
PloS one 2009;4(6):e5797.
2009: Sean D Hooper; Konstantinos Mavromatis; Nikos Kyrpides
Microbial co-habitation and lateral gene transfer: what transposases can tell us.
Genome biology 2009;10(4):R45.
2009: Iain J Anderson; Lakshmi Dharmarajan; Jason Rodriguez; Sean Hooper; Iris Porat; Luke E Ulrich; James G Elkins; Kostas Mavromatis; Hui Sun; Miriam Land; Alla Lapidus; Susan Lucas; Kerrie Barry; Harald Huber; Igor B Zhulin; William B Whitman; Biswarup Mukhopadhyay; Carl Woese; James Bristow; Nikos Kyrpides
The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota.
BMC genomics 2009;10():145.
2009: Konstantinos Mavromatis; Natalia Ivanova; Iain Anderson; Athanasios Lykidis; Sean D Hooper; Hui Sun; Victor Kunin; Alla Lapidus; Philip Hugenholtz; Bharat Patel; Nikos Kyrpides
Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.
PloS one 2009;4(1):e4192.
2008: George Tsiamis; Katerina Katsaveli; Spyridon Ntougias; Nikos Kyrpides; Gary Andersen; Yvette Piceno; Kostas Bourtzis
Prokaryotic community profiles at different operational stages of a Greek solar saltern.
Research in microbiology 2008;159(9-10):609-27.
2008: Daniel Dalevi; Natalia N Ivanova; Konstantinos Mavromatis; Sean D Hooper; Ernest Szeto; Philip Hugenholtz; Nikos Kyrpides; Victor M Markowitz
Annotation of metagenome short reads using proxygenes.
Bioinformatics (Oxford, England) 2008;24(16):i7-13.
2008: James G Elkins; Mircea Podar; David E Graham; Kira S Makarova; Yuri Wolf; Lennart Randau; Brian P Hedlund; Céline Brochier-Armanet; Victor Kunin; Iain Anderson; Alla Lapidus; Eugene Goltsman; Kerrie Barry; Eugene V Koonin; Phil Hugenholtz; Nikos Kyrpides; Gerhard Wanner; Paul Richardson; Martin Keller; Karl O Stetter
A korarchaeal genome reveals insights into the evolution of the Archaea.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(23):8102-7.
2008: George M Garrity; Dawn Field; Nikos Kyrpides; Lynette Hirschman; Susanna-Assunta Sansone; Samuel Angiuoli; James R Cole; Frank Oliver Glöckner; Eugene Kolker; George Kowalchuk; Mary Ann Moran; Dave Ussery; Owen R White
Toward a standards-compliant genomic and metagenomic publication record.
Omics : a journal of integrative biology 2008;12(2):157-60.
2008: Dawn Field; George M Garrity; Susanna-Assunta Sansone; Peter Sterk; Tanya Gray; Nikos Kyrpides; Lynette Hirschman; Frank Oliver Glöckner; Renzo Kottmann; Sam Angiuoli; Owen R White; Peter Dawyndt; Nick Thomson; Inigo San Gil; Norman Morrison; Tatiana Tatusova; Ilene Mizrachi; Robert Vaughan; Guy Cochrane; Leonid Kagan; Sean Murphy; Lynn M Schriml
Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.
Omics : a journal of integrative biology 2008;12(2):109-13.
2008: Dawn Field; Frank Oliver Glöckner; George M Garrity; Tanya Gray; Peter Sterk; Guy Cochrane; Robert Vaughan; Eugene Kolker; Renzo Kottmann; Nikos Kyrpides; Sam Angiuoli; Peter Dawyndt; Robert Guralnick; Philip Goldstein; Neil Hall; Lynette Hirschman; Saul Kravitz; Allyson L Lister; Victor Markowitz; Nick Thomson; Trish Whetzel
Meeting report: the fourth Genomic Standards Consortium (GSC) workshop.
Omics : a journal of integrative biology 2008;12(2):101-8.
2008: Bart Van Brabant; Tanya Gray; Bert Verslyppe; Nikos Kyrpides; Karin Dietrich; Frank Oliver Glöckner; James Cole; Ryan Farris; Lynn M Schriml; Paul De Vos; Bernard De Baets; Dawn Field; Peter Dawyndt
Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers.
Omics : a journal of integrative biology 2008;12(2):123-7.
2008: Samuel V Angiuoli; Aaron Gussman; William Klimke; Guy Cochrane; Dawn Field; George M Garrity; Chinnappa D Kodira; Nikos Kyrpides; Ramana Madupu; Victor Markowitz; Tatiana Tatusova; Nick Thomson; Owen R White
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.
Omics : a journal of integrative biology 2008;12(2):137-41.
2008: Lynette Hirschman; Cheryl Clark; K Bretonnel Cohen; Scott Mardis; Joanne Luciano; Renzo Kottmann; James Cole; Victor Markowitz; Nikos Kyrpides; Norman Morrison; Lynn M Schriml; Dawn Field
Habitat-Lite: a GSC case study based on free text terms for environmental metadata.
Omics : a journal of integrative biology 2008;12(2):129-36.
2008: Dawn Field; George M Garrity; Tanya Gray; Norman Morrison; Jeremy Selengut; Peter Sterk; Tatiana Tatusova; Nicholas Thomson; Michael Allen; Samuel V Angiuoli; Michael Ashburner; Nelson Axelrod; Sandra Baldauf; Stuart Ballard; Jeffrey Boore; Guy Cochrane; James Cole; Peter Dawyndt; Paul De Vos; Claude DePamphilis; Robert Edwards; Nadeem Faruque; Robert Feldman; Jack Gilbert; Paul Gilna; Frank Oliver Glöckner; Philip Goldstein; Robert Guralnick; Dan Haft; David Hancock; Henning Hermjakob; Christiane Hertz-Fowler; Phil Hugenholtz; Ian Joint; Leonid Kagan; Matthew Kane; Jessie Kennedy; George Kowalchuk; Renzo Kottmann; Eugene Kolker; Saul Kravitz; Nikos Kyrpides; Jim Leebens-Mack; Suzanna E Lewis; Kelvin Li; Allyson L Lister; Phillip Lord; Natalia Maltsev; Victor Markowitz; Jennifer Martiny; Barbara Methe; Ilene Mizrachi; Richard Moxon; Karen Nelson; Julian Parkhill; Lita Proctor; Owen R White; Susanna-Assunta Sansone; Andrew Spiers; Robert Stevens; Paul Swift; Chris Taylor; Yoshio Tateno; Adrian Tett; Sarah Turner; David Ussery; Bob Vaughan; Naomi Ward; Trish Whetzel; Ingio San Gil; Gareth Wilson; Anil Wipat
The minimum information about a genome sequence (MIGS) specification.
Nature biotechnology 2008;26(5):541-7.
2008: Iain Anderson; Jason Rodriguez; Dwi Susanti; Iris Porat; Claudia Reich; Luke E Ulrich; James G Elkins; Kostas Mavromatis; Athanasios Lykidis; Edwin Kim; Linda S Thompson; Matt Nolan; Miriam Land; Alex Copeland; Alla Lapidus; Susan Lucas; Chris Detter; Igor B Zhulin; Gary J Olsen; William B Whitman; Biswarup Mukhopadhyay; James Bristow; Nikos Kyrpides
Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction.
Journal of bacteriology 2008;190(8):2957-65.
2008: Mircea Podar; Iain Anderson; Kira S Makarova; James G Elkins; Natalia Ivanova; Mark A Wall; Athanasios Lykidis; Kostantinos Mavromatis; Hui Sun; Matthew Hudson; Wenqiong Chen; Cosmin Deciu; Don Hutchison; Jonathan R Eads; Abraham Anderson; Fillipe Fernandes; Ernest Szeto; Alla Lapidus; Nikos Kyrpides; Milton H Saier; Paul M Richardson; Reinhard Rachel; Harald Huber; Jonathan Eisen; Eugene V Koonin; Martin Keller; Karl O Stetter
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans.
Genome biology 2008;9(11):R158.
2008: Konstantinos Liolios; Konstantinos Mavromatis; Nektarios Tavernarakis; Nikos Kyrpides
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.
Nucleic acids research 2008;36(Database issue):D475-9.
2008: Victor M Markowitz; Ernest Szeto; Krishna Palaniappan; Yuri Grechkin; Ken Chu; I-Min A Chen; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia N Ivanova; Nikos Kyrpides
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.
Nucleic acids research 2008;36(Database issue):D528-33.
2008: Victor M Markowitz; Natalia N Ivanova; Ernest Szeto; Krishna Palaniappan; Ken Chu; Daniel Dalevi; I-Min A Chen; Yuri Grechkin; Inna Dubchak; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Philip Hugenholtz; Nikos Kyrpides
IMG/M: a data management and analysis system for metagenomes.
Nucleic acids research 2008;36(Database issue):D534-8.
2007: Falk Warnecke; Peter Luginbühl; Natalia Ivanova; Majid Ghassemian; Toby Richardson; Justin T Stege; Michelle Cayouette; Alice C McHardy; Gordana Djordjevic; Nahla Aboushadi; Rotem Sorek; Susannah G Tringe; Mircea Podar; Hector Garcia Martin; Victor Kunin; Daniel Dalevi; Julita Madejska; Edward Kirton; Darren Platt; Ernest Szeto; Asaf Salamov; Kerrie Barry; Natalia Mikhailova; Nikos Kyrpides; Eric G Matson; Elizabeth A Ottesen; Xinning Zhang; Myriam Hernández; Catalina Murillo; Luis G Acosta; Isidore Rigoutsos; Giselle Tamayo; Brian D Green; Cathy Chang; Edward M Rubin; Eric J Mathur; Dan E Robertson; Philip Hugenholtz; Jared R Leadbetter
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.
Nature 2007;450(7169):560-5.
2007: Konstantinos Mavromatis; Natalia Ivanova; Kerrie W Barry; Harris Shapiro; Eugene Goltsman; Alice C McHardy; Isidore Rigoutsos; Asaf Salamov; Frank Korzeniewski; Miriam Land; Alla Lapidus; Igor V Grigoriev; Paul Richardson; Philip Hugenholtz; Nikos Kyrpides
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
Nature methods 2007;4(6):495-500.
2007: Dawn Field; Nikos Kyrpides
The positive role of the ecological community in the genomic revolution.
Microbial ecology 2007;53(3):507-11.
2007: Athanasios Lykidis; Konstantinos Mavromatis; Natalia Ivanova; Iain Anderson; Miriam Land; Genevieve DiBartolo; Michele Martinez; Alla Lapidus; Susan Lucas; Alex Copeland; Paul Richardson; David B Wilson; Nikos Kyrpides
Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX.
Journal of bacteriology 2007;189(6):2477-86.
2007: Victor M Markowitz; Nikos Kyrpides
Comparative genome analysis in the integrated microbial genomes (IMG) system.
Methods in molecular biology (Clifton, N.J.) 2007;395():35-56.
2007: Charles Bland; Teresa L Ramsey; Fareedah Sabree; Micheal Lowe; Kyndall Brown; Nikos Kyrpides; Philip Hugenholtz
CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats.
BMC bioinformatics 2007;8():209.
2006: Tanja Woyke; Hanno Teeling; Natalia N Ivanova; Marcel Huntemann; Michael Richter; Frank Oliver Gloeckner; Dario Boffelli; Iain J Anderson; Kerrie W Barry; Harris J Shapiro; Ernest Szeto; Nikos Kyrpides; Marc Mussmann; Rudolf Amann; Claudia Bergin; Caroline Ruehland; Edward M Rubin; Nicole Dubilier
Symbiosis insights through metagenomic analysis of a microbial consortium.
Nature 2006;443(7114):950-5.
2006: Héctor García Martín; Natalia Ivanova; Victor Kunin; Falk Warnecke; Kerrie W Barry; Alice C McHardy; Christine Yeates; Shaomei He; Asaf Salamov; Ernest Szeto; Eileen Dalin; Nicholas Putnam; Harris J Shapiro; Jasmyn L Pangilinan; Isidore Rigoutsos; Nikos Kyrpides; Linda L Blackall; Katherine D McMahon; Philip Hugenholtz
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.
Nature biotechnology 2006;24(10):1263-9.
2006: Victor M Markowitz; Natalia Ivanova; Krishna Palaniappan; Ernest Szeto; Frank Korzeniewski; Athanasios Lykidis; Iain Anderson; Konstantinos Mavromatis; Konstantinos Mavrommatis; Victor Kunin; Hector Garcia Martin; Inna Dubchak; Philip Hugenholtz; Nikos Kyrpides
An experimental metagenome data management and analysis system.
Bioinformatics (Oxford, England) 2006;22(14):e359-67.
2006: Konstantinos Mavromatis; C Kuyler Doyle; Athanasios Lykidis; Natalia Ivanova; M P Francino; Patrick S G Chain; M Shin; Stephanie Malfatti; Frank W Larimer; Alex Copeland; John C Detter; Miriam Land; Paul M Richardson; Xue-Jie Yu; David H Walker; Jere W McBride; Nikos Kyrpides
The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies.
Journal of bacteriology 2006;188(11):4015-23.
2006: Victor M Markowitz; Frank Korzeniewski; Krishna Palaniappan; Ernest Szeto; Greg Werner; Anu Padki; Xueling Zhao; Inna Dubchak; Philip Hugenholtz; Iain Anderson; Athanasios Lykidis; Konstantinos Mavromatis; Natalia Ivanova; Nikos Kyrpides
The integrated microbial genomes (IMG) system.
Nucleic acids research 2006;34(Database issue):D344-8.
2006: Konstantinos Liolios; Nektarios Tavernarakis; Philip Hugenholtz; Nikos Kyrpides
The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.
Nucleic acids research 2006;34(Database issue):D332-4.
2005: Iain Anderson; Alexei Sorokin; Vinayak Kapatral; Gary Reznik; Anamitra Bhattacharya; Natalia Mikhailova; Henry Burd; Victor Joukov; Denis Kaznadzey; Theresa Walunas; Niels Larsen; Gordon Pusch; Konstantinos Liolios; Yuri Grechkin; Alla Lapidus; Eugene Goltsman; Lien Chu; Michael Fonstein; S Dusko Ehrlich; Ross Overbeek; Nikos Kyrpides; Natalia Ivanova
Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis.
FEMS microbiology letters 2005;250(2):175-84.
2005: Helene Feil; William S Feil; Patrick S G Chain; Frank W Larimer; Genevieve DiBartolo; Alex Copeland; Athanasios Lykidis; Stephen Trong; Matt Nolan; Eugene Goltsman; James Thiel; Stephanie Malfatti; Joyce E Loper; Alla Lapidus; John C Detter; Miriam Land; Paul M Richardson; Nikos Kyrpides; Natalia Ivanova; Steven E Lindow
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(31):11064-9.
2005: Jeremy Foster; Mehul Ganatra; Ibrahim H Kamal; Jennifer Ware; Kira Makarova; Natalia Ivanova; Anamitra Bhattacharyya; Vinayak Kapatral; Sanjay Kumar; Janos Posfai; Tamas Vincze; Jessica Ingram; Laurie Moran; Alla Lapidus; Marina V Omelchenko; Nikos Kyrpides; Elodie Ghedin; Shiliang Wang; Eugene Goltsman; Victor Joukov; Olga Ostrovskaya; Kiryl Tsukerman; Mikhail Mazur; Donald Comb; Eugene Koonin; Barton Slatko
The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode.
PLoS biology 2005;3(4):e121.
2004: Alexander Bolotin; Benoit Quinquis; Pierre Renault; Alexei Sorokin; S Dusko Ehrlich; Saulius Kulakauskas; Alla Lapidus; Eugene Goltsman; Michael Mazur; Gordon Pusch; Michael Fonstein; Ross Overbeek; Nikos Kyrpides; Bénédicte Purnelle; Deborah Prozzi; Katrina Ngui; David Masuy; Frédéric Hancy; Sophie Burteau; Marc Boutry; Jean Delcour; André Goffeau; Pascal Hols
Complete sequence and comparative genome analysis of the dairy bacterium Streptococcus thermophilus.
Nature biotechnology 2004;22(12):1554-8.
2003: Svetlana Y Gerdes; M D Scholle; John W Campbell; Gábor Balázsi; Erzsébet Ravasz; Matthew D Daugherty; A L Somera; Nikos Kyrpides; Iain Anderson; M S Gelfand; A Bhattacharya; Vinayak Kapatral; Mark D'Souza; Mark V Baev; Yuri Grechkin; Faika Mseeh; Michael Fonstein; Ross Overbeek; A-L Barabási; Zoltan N. Oltvai; Andrei Osterman
Experimental determination and system level analysis of essential genes in Escherichia coli MG1655.
Journal of bacteriology 2003;185(19):5673-84.
2003: Vinayak Kapatral; Natalia Ivanova; Iain Anderson; Gary Reznik; Anamitra Bhattacharyya; Warren Gardner; Natalia Mikhailova; Alla Lapidus; Niels Larsen; Mark D'Souza; Theresa Walunas; Robert Haselkorn; Ross Overbeek; Nikos Kyrpides
Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586.
Genome research 2003;13(6A):1180-9.
2003: Natalia Ivanova; Alexei Sorokin; Iain Anderson; Nathalie Galleron; Benjamin Candelon; Vinayak Kapatral; Anamitra Bhattacharyya; Gary Reznik; Natalia Mikhailova; Alla Lapidus; Lien Chu; Michael Mazur; Eugene Goltsman; Niels Larsen; Mark D'Souza; Theresa Walunas; Yuri Grechkin; Gordon Pusch; Robert Haselkorn; Michael Fonstein; S Dusko Ehrlich; Ross Overbeek; Nikos Kyrpides
Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis.
Nature 2003;423(6935):87-91.
2003: Ross Overbeek; Niels Larsen; Theresa Walunas; Mark D'Souza; Gordon Pusch; Eugene Selkov; Konstantinos Liolios; Victor Joukov; Denis Kaznadzey; Iain Anderson; Anamitra Bhattacharyya; Henry Burd; Warren Gardner; Paul Hanke; Vinayak Kapatral; Natalia Mikhailova; Olga Vasieva; Andrei Osterman; Veronika Vonstein; Michael Fonstein; Natalia Ivanova; Nikos Kyrpides
The ERGO genome analysis and discovery system.
Nucleic acids research 2003;31(1):164-71.
2002: Anamitra Bhattacharyya; Stephanie Stilwagen; Gary Reznik; Helene Feil; William S Feil; Iain Anderson; Axel Bernal; Mark D'Souza; Natalia Ivanova; Vinayak Kapatral; Niels Larsen; Tamara Los; Athanasios Lykidis; Eugene Selkov; Theresa Walunas; Alexander H Purcell; Robert A Edwards; Trevor L Hawkins; Robert Haselkorn; Ross Overbeek; Nikos Kyrpides; Paul Predki
Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights.
Genome research 2002;12(10):1556-63.
2002: Anamitra Bhattacharyya; Stephanie Stilwagen; Natalia Ivanova; Mark D'Souza; Axel Bernal; Athanasios Lykidis; Vinayak Kapatral; Iain Anderson; Niels Larsen; Tamara Los; Gary Reznik; Eugene Selkov; Theresa Walunas; Helene Feil; William S Feil; Alexander H Purcell; Jean-Louis Lassez; Trevor L Hawkins; Robert Haselkorn; Ross Overbeek; Paul Predki; Nikos Kyrpides
Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(19):12403-8.
2002: Vinayak Kapatral; Iain Anderson; Natalia Ivanova; Gary Reznik; Tamara Los; Athanasios Lykidis; Anamitra Bhattacharyya; Allen Bartman; Warren Gardner; Galina Grechkin; Lihua Zhu; Olga Vasieva; Lien Chu; Yakov Kogan; Oleg Chaga; Eugene Goltsman; Axel Bernal; Niels Larsen; Mark D'Souza; Theresa Walunas; Gordon Pusch; Robert Haselkorn; Michael Fonstein; Nikos Kyrpides; Ross Overbeek
Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.
Journal of bacteriology 2002;184(7):2005-18.
2002: Vito G DelVecchio; Vinayak Kapatral; Rajendra J Redkar; Guy Patra; Cesar V Mujer; Tamara Los; Natalia Ivanova; Iain Anderson; Anamitra Bhattacharyya; Athanasios Lykidis; Gary Reznik; Lynn Jablonski; Niels Larsen; Mark D'Souza; Axel Bernal; Mikhail Mazur; Eugene Goltsman; Evgeni Selkov; Philip H Elzer; Sue Hagius; David O'Callaghan; Jean-Jacques LETESSON; Robert Haselkorn; Nikos Kyrpides; Ross Overbeek
The genome sequence of the facultative intracellular pathogen Brucella melitensis.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(1):443-8.
2001: Nektarios Tavernarakis; J K Everett; Nikos Kyrpides; M Driscoll
Structural and functional features of the intracellular amino terminus of DEG/ENaC ion channels.
Current biology : CB 2001;11(6):R205-8.
2001: Giorgos Sianidis; Spyridoula Karamanou; Eleftheria Vrontou; Konstantinos Boulias; K Repanas; Nikos Kyrpides; Anastasia S Politou; Anastassios Economou
Cross-talk between catalytic and regulatory elements in a DEAD motor domain is essential for SecA function.
The EMBO journal 2001;20(5):961-70.
2001: David E Graham; Nikos Kyrpides; I J Anderson; Ross Overbeek; William B Whitman
Genome of Methanocaldococcus (Methanococcus) jannaschii.
Methods in enzymology 2001;330():40-123.
2001: A Bernal; U Ear; Nikos Kyrpides
Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.
Nucleic acids research 2001;29(1):126-7.
2000: Nikos Kyrpides; Christos Ouzounis; Ioannis Iliopoulos; Veronika Vonstein; Ross Overbeek
Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools.
Nucleic acids research 2000;28(22):4573-6.
2000: Ross Overbeek; Niels Larsen; Gordon Pusch; Mark D'Souza; Evgeni Selkov; Nikos Kyrpides; Michael Fonstein; Natalia Maltsev; E Selkov
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction.
Nucleic acids research 2000;28(1):123-5.
1999: Anton J Enright; Ioannis Iliopoulos; Nikos Kyrpides; Christos Ouzounis
Protein interaction maps for complete genomes based on gene fusion events.
Nature 1999;402(6757):86-90.
1999: Nektarios Tavernarakis; M Driscoll; Nikos Kyrpides
The SPFH domain: implicated in regulating targeted protein turnover in stomatins and other membrane-associated proteins.
Trends in biochemical sciences 1999;24(11):425-7.
1999: Nikos Kyrpides; Ross Overbeek; Christos Ouzounis
Universal protein families and the functional content of the last universal common ancestor.
Journal of molecular evolution 1999;49(4):413-23.
1999: Nikos Kyrpides
Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide.
Bioinformatics (Oxford, England) 1999;15(9):773-4.
1999: Nikos Kyrpides; Gary J Olsen
Archaeal and bacterial hyperthermophiles: horizontal gene exchange or common ancestry?
Trends in genetics : TIG 1999;15(8):298-9.
1999: Nikos Kyrpides; Christos Ouzounis
Transcription in archaea.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(15):8545-50.
1999: Nikos Kyrpides; Christos Ouzounis
Whole-genome sequence annotation: 'Going wrong with confidence'.
Molecular microbiology 1999;32(4):886-7.
1999: D J Stravopodis; Nikos Kyrpides
Identification of protein-tyrosine phosphatases in Archaea.
Journal of molecular evolution 1999;48(5):625-7.
1998: Nikos Kyrpides; Christos Ouzounis
Errors in genome reviews.
Science (New York, N.Y.) 1998;281(5382):1457.
1998: Nikos Kyrpides; Carl R Woese
Tetratrico-peptide-repeat proteins in the archaeon Methanococcus jannaschii.
Trends in biochemical sciences 1998;23(7):245-7.
1998: L Rodriguez-Monge; Christos Ouzounis; Nikos Kyrpides
A ferredoxin-like domain in RNA polymerase 30/40-kDa subunits.
Trends in biochemical sciences 1998;23(5):169-70.
1998: Nikos Kyrpides; Carl R Woese
Archaeal translation initiation revisited: the initiation factor 2 and eukaryotic initiation factor 2B alpha-beta-delta subunit families.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(7):3726-30.
1998: Nikos Kyrpides; Carl R Woese
Universally conserved translation initiation factors.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(1):224-8.
1997: Christos Ouzounis; Nikos Kyrpides
ThiD-TenA: a gene pair fusion in eukaryotes.
Journal of molecular evolution 1997;45(6):708-11.
1997: Nikos Kyrpides; Christos Ouzounis
Bacterial sigma 70 transcription factor DNA-binding domains in the archaeon Methanococcus jannaschii.
Journal of molecular evolution 1997;45(6):706-7.
1997: H P Klenk; R A Clayton; J F Tomb; Owen R White; K E Nelson; K A Ketchum; R J Dodson; Michelle G Giglio; E K Hickey; J D Peterson; D L Richardson; A R Kerlavage; D E Graham; Nikos Kyrpides; R D Fleischmann; John Quackenbush; N H Lee; G G Sutton; S Gill; E F Kirkness; B A Dougherty; keith h mckenney; M D Adams; B Loftus; S Peterson; C I Reich; Leslie Klis McNeil; J H Badger; A Glodek; L Zhou; R Overbeek; J D Gocayne; J F Weidman; L McDonald; T Utterback; M D Cotton; T Spriggs; P Artiach; B P Kaine; S M Sykes; P W Sadow; K P D'Andrea; C Bowman; C Fujii; S A Garland; T M Mason; G J Olsen; Claire M Fraser-Liggett; Hamilton O Smith; C R Woese; J C Venter
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.
Nature 1997;390(6658):364-70.
1996: Christos Ouzounis; Nikos Kyrpides
The core histone fold: limits to functional versatility.
Journal of molecular evolution 1996;43(6):541-2.
1996: Nikos Kyrpides; Carl R Woese; Christos Ouzounis
KOW: a novel motif linking a bacterial transcription factor with ribosomal proteins.
Trends in biochemical sciences 1996;21(11):425-6.
1996: Christos Ouzounis; Nikos Kyrpides
The emergence of major cellular processes in evolution.
FEBS letters 1996;390(2):119-23.
1996: Christos Ouzounis; Nikos Kyrpides
Parallel origins of the nucleosome core and eukaryotic transcription from Archaea.
Journal of molecular evolution 1996;42(2):234-9.
1996: Nikos Kyrpides; Gary J Olsen; H P Klenk; Owen R White; Carl R Woese
Methanococcus jannaschii genome: revisited.
Microbial & comparative genomics 1996;1(4):329-38.
1995: Nikos Kyrpides; Nektarios Tavernarakis; Joseph Papamatheakis; George Thireos
A transient GCN4 mRNA destabilization follows GCN4 translational derepression.
The Journal of biological chemistry 1995;270(29):17317-20.
1995: Nikos Kyrpides; Christos Ouzounis
Nucleic acid-binding metabolic enzymes: living fossils of stereochemical interactions?
Journal of molecular evolution 1995;40(6):564-9.
1995: Nikos Kyrpides; Christos Ouzounis
The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosus.
Trends in biochemical sciences 1995;20(4):140-1.
1995: Christos Ouzounis; Nikos Kyrpides; Chris Sander
Novel protein families in archaean genomes.
Nucleic acids research 1995;23(4):565-70.
1994: Christos Ouzounis; Nikos Kyrpides
On the evolution of arginases and related enzymes.
Journal of molecular evolution 1994;39(1):101-4.
1994: Christos Ouzounis; Nikos Kyrpides
Reverse interpretation: a hypothetical selection mechanism for adaptive mutagenesis based on autoregulated mRNA stability.
Journal of theoretical biology 1994;167(4):373-9.
1993: Nikos Kyrpides; Christos Ouzounis
Mechanisms of specificity in mRNA degradation: autoregulation and cognate interactions.
Journal of theoretical biology 1993;163(3):373-92.
1993: S Vassiliadis; Nikos Kyrpides; D Stravopodis; M Grigoriou; I Athanassakis; J Papamatheakis
Investigation of intracellular signals generated by gamma-interferon and IL-4 leading to the induction of class II antigen expression.
Mediators of inflammation 1993;2(5):343-8.
1993: Simon Vassiliadis; D Stravopodis; Nikos Kyrpides; Marirena Grigoriou; Joseph Papamatheakis
One and two-level regulation patterns affecting NF-kappa B mRNA and nuclear NF-kappa B activity after treatment with TNF-alpha, IFN-gamma and IL-4.
European cytokine network 1993;4(1):25-30.
1992: Simon Vassiliadis; Nikos Kyrpides; Joseph Papamatheakis
The role of IL-4 in human myeloid leukemia: stimulation of RNA synthesis and transduction of differentiation signals through an IL-4 receptor leads to functional and HLA positive HL-60 cells.
Leukemia & lymphoma 1992;7(3):235-42.
1992: Zacharias G Scouras; Nikos Kyrpides; Penelope Mavragani-Tsipidou
The prominent role of ectopic pairing in the toroidal conformation of Drosophila polytene chromosome bands.
Cytobios 1992;69(276):47-54.
1992: Simon Vassiliadis; Larry J Guilbert; Nikos Kyrpides; Joseph Papamatheakis
Different molecular mechanisms lead to same endpoints with different function: TNF-alpha induces non-functional CSF-1 receptors on HL-60 cells in contrast to interferon-gamma.
Journal of receptor research 1992;12(1):59-70.
1990: Penelope Mavragani-Tsipidou; Nikos Kyrpides; Zacharias G Scouras
Evolutionary implications of duplications and Balbiani rings in Drosophila. A study of Drosophila serrata.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 1990;33(4):478-85.