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anil jegga

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TOP 3
Qi Li; Todd Lingren; Laura Stoutenborough; Haijun Zhai; Kevin Bretonnel Cohen; Louise Deleger; anil jegga; Megan Kaiser; Imre Solti
Mining FDA drug labels for medical conditions.
Divya Sardana; Lun Yang; Minlu Zhang; Cheng Zhu; Ranga C Gudivada; anil jegga
Drug repositioning for orphan diseases.
Minlu Zhang; Cheng Zhu; Alexis Jacomy; Long J Lu; anil jegga
The orphan disease networks.

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All Publications

2013: Qi Li; Todd Lingren; Laura Stoutenborough; Haijun Zhai; Kevin Bretonnel Cohen; Louise Deleger; anil jegga; Megan Kaiser; Imre Solti
Mining FDA drug labels for medical conditions.
BMC medical informatics and decision making 2013;13():53.
2011: Divya Sardana; Lun Yang; Minlu Zhang; Cheng Zhu; Ranga C Gudivada; anil jegga
Drug repositioning for orphan diseases.
Briefings in bioinformatics 2011;12(4):346-56.
2011: Minlu Zhang; Cheng Zhu; Alexis Jacomy; Long J Lu; anil jegga
The orphan disease networks.
American journal of human genetics 2011;88(6):755-66.
2011: Lun Yang; Ke-Jian Wang; Li-Shan Wang; anil jegga; Sheng-Ying Qin; Guang He; Jian Chen; Yue Xiao; Lin He
Chemical-protein interactome and its application in off-target identification.
Interdisciplinary sciences, computational life sciences 2011;3(1):22-30.
2011: Vivek Kaimal; Divya Sardana; Eric E Bardes; Ranga Chandra Gudivada; Jing Chen; anil jegga
Integrative systems biology approaches to identify and prioritize disease and drug candidate genes.
Methods in molecular biology (Clifton, N.J.) 2011;700():241-59.
2010: Xiaowei Zhang; Xiaohong Wang; Hongyan Zhu; Cheng Zhu; Yigang Wang; William T Pu; anil jegga; Guo-Chang Fan
Synergistic effects of the GATA-4-mediated miR-144/451 cluster in protection against simulated ischemia/reperfusion-induced cardiomyocyte death.
Journal of molecular and cellular cardiology 2010;49(5):841-50.
2010: Arturo R Maldonado; Chuck Klanke; anil jegga; Bruce Aronow; Yonatan Y Mahller; Timothy P Cripe; Timothy M Crombleholme
Molecular engineering and validation of an oncolytic herpes simplex virus type 1 transcriptionally targeted to midkine-positive tumors.
The journal of gene medicine 2010;12(7):613-23.
2010: Divya Sardana; Suresh Vasa; Nishanth Vepachedu; Jing Chen; Ranga Chandra Gudivada; Bruce Aronow; anil jegga
PhenoHM: human-mouse comparative phenome-genome server.
Nucleic acids research 2010;38(Web Server issue):W165-74.
2010: Vivek Kaimal; Eric E Bardes; Scott C Tabar; anil jegga; Bruce Aronow
ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems.
Nucleic acids research 2010;38(Web Server issue):W96-102.
2010: Clifford M Takemoto; Stephanie Brandal; anil jegga; Youl-Nam Lee; Amir Shahlaee; Ye Ying; Rodney Dekoter; A MICHAEL MCDEVITT
PU.1 positively regulates GATA-1 expression in mast cells.
Journal of immunology (Baltimore, Md. : 1950) 2010;184(8):4349-61.
2010: Katie Moyer; Vivek Kaimal; Cristina Pacheco; Reena Mourya; Huan Xu; Pranavkumar Shivakumar; Ranajit Chakraborty; Marepalli Rao; John Magee; Kevin Bove; Bruce Aronow; anil jegga; Jorge A Bezerra
Staging of biliary atresia at diagnosis by molecular profiling of the liver.
Genome medicine 2010;2(5):33.
2009: Shyra J Miller; Walter J Jessen; Tapan Mehta; Atira Hardiman; Emily Sites; Sergio Kaiser; anil jegga; Hua Li; Meena Upadhyaya; Marco Giovannini; David Muir; Margaret R Wallace; Eva Lopez; Eduard Serra; G Petur Nielsen; Conxi Lazaro; Anat Stemmer-Rachamimov; Grier Page; Bruce J Aronow; Nancy Ratner
Integrative genomic analyses of neurofibromatosis tumours identify SOX9 as a biomarker and survival gene.
EMBO molecular medicine 2009;1(4):236-48.
2009: Jing Chen; Eric E Bardes; Bruce Aronow; anil jegga
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization.
Nucleic acids research 2009;37(Web Server issue):W305-11.
2009: Sivakumar Gowrisankar; anil jegga
Regression based predictor for p53 transactivation.
BMC bioinformatics 2009;10():215.
2009: Xiaoyan A Qu; Ranga C Gudivada; anil jegga; Eric K Neumann; Bruce Aronow
Inferring novel disease indications for known drugs by semantically linking drug action and disease mechanism relationships.
BMC bioinformatics 2009;10 Suppl 5():S4.
2009: Jing Chen; Bruce Aronow; anil jegga
Disease candidate gene identification and prioritization using protein interaction networks.
BMC bioinformatics 2009;10():73.
2008: Eric W Brunskill; Bruce Aronow; Kylie Georgas; Bree Rumballe; Michael T Valerius; Jeremy Aronow; Vivek Kaimal; anil jegga; Jing Yu; Sean Grimmond; Andrew P McMahon; Larry T Patterson; Melissa H Little; steven potter
Atlas of gene expression in the developing kidney at microanatomic resolution.
Developmental cell 2008;15(5):781-91.
2008: Ranga Chandra Gudivada; Xiaoyan A Qu; Jing Chen; anil jegga; Eric K Neumann; Bruce Aronow
Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge.
Journal of biomedical informatics 2008;41(5):717-29.
2008: Clifford M Takemoto; Youl-Nam Lee; anil jegga; Daniella Zablocki; Stephanie Brandal; Amir Shahlaee; Suming Huang; Ying Ye; Sivakumar Gowrisankar; Jimmy Huynh; A MICHAEL MCDEVITT
Mast cell transcriptional networks.
Blood cells, molecules & diseases 2008;41(1):82-90.
2008: Meghana Kamath Hemphill; Isaac B Houston; A J Janovski; X Zhu; S Gowrisankar; anil jegga; Rodney P DeKoter
Dose-dependent repression of T-cell and natural killer cell genes by PU.1 enforces myeloid and B-cell identity.
Leukemia 2008;22(6):1214-25.
2008: anil jegga; Alberto Inga; Daniel Menendez; Bruce Aronow; Michael A Resnick
Functional evolution of the p53 regulatory network through its target response elements.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(3):944-9.
2008: Ranga C Gudivada; Yun Fu; anil jegga; Xiaoyan A Qu; Eric K Neumann; Bruce J Aronow
Mining human phenome to investigate modularity of complex disorders.
Summit on translational bioinformatics 2008;2008():31-5.
2008: Amit Sinha; Vivek Kaimal; Jing Chen; anil jegga
Dissecting microregulation of a master regulatory network.
BMC genomics 2008;9():88.
2007: Michael P Markey; J Bergseid; Emily E Bosco; K Stengel; H Xu; Christopher N Mayhew; Sandy Schwemberger; Wesley A Braden; Y Jiang; George Babcock; anil jegga; Bruce Aronow; Michael F Reed; J Y J Wang; Erik S Knudsen
Loss of the retinoblastoma tumor suppressor: differential action on transcriptional programs related to cell cycle control and immune function.
Oncogene 2007;26(43):6307-18.
2007: Abhinav Diwan; Andrew G Koesters; Amy Odley; Suvarnamala Pushkaran; Christopher P Baines; Benjamin T Spike; Diedre Daria; anil jegga; Hartmut Geiger; Bruce Aronow; Jeffery D Molkentin; Kay F Macleod; Theodosia A Kalfa; Gerald W Dorn
Unrestrained erythroblast development in Nix-/- mice reveals a mechanism for apoptotic modulation of erythropoiesis.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(16):6794-9.
2007: Jing Chen; Huan Xu; Bruce Aronow; anil jegga
Improved human disease candidate gene prioritization using mouse phenotype.
BMC bioinformatics 2007;8():392.
2007: Sergio Kaiser; Young-Kyu Park; Jeffrey L Franklin; Richard B Halberg; Ming Yu; Walter J Jessen; Johannes Freudenberg; Xiaodi Chen; Kevin Haigis; anil jegga; Sue Kong; Bhuvaneswari Sakthivel; Huan Xu; Timothy Reichling; Mohammad Azhar; Gregory P Boivin; Reade B Roberts; Anika C Bissahoyo; Fausto Gonzales; Greg C Bloom; Steven Eschrich; Scott L Carter; Jeremy E Aronow; John Kleimeyer; Michael Kleimeyer; Vivek Ramaswamy; Stephen H Settle; Braden Boone; Shawn Levy; Jonathan M Graff; Thomas Doetschman; Joanna Groden; William F Dove; David Threadgill; Timothy J Yeatman; Robert J Coffey; Bruce Aronow
Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer.
Genome biology 2007;8(7):R131.
2007: Cong Liu; Bruce Aronow; anil jegga; Ning Wang; Alex Miethke; Reena Mourya; Jorge A Bezerra
Novel resequencing chip customized to diagnose mutations in patients with inherited syndromes of intrahepatic cholestasis.
Gastroenterology 2007;132(1):119-26.
2007: anil jegga; Jing Chen; Sivakumar Gowrisankar; Mrunal A Deshmukh; RangaChandra Gudivada; Sue Kong; Vivek Kaimal; Bruce Aronow
GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs.
Nucleic acids research 2007;35(Database issue):D116-21.
2007: anil jegga; Sivakumar Gowrisankar; Jing Chen; Bruce Aronow
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease.
Nucleic acids research 2007;35(Database issue):D700-6.
2006: Shyra J Miller; Fatima Rangwala; Jon Williams; Peter Ackerman; Sue Kong; anil jegga; Sergio Kaiser; Bruce Aronow; Silke Frahm; Lan Kluwe; Victor Mautner; Meena Upadhyaya; David Muir; Margaret Wallace; Jussara Hagen; Dawn E Quelle; Mark A Watson; Arie Perry; David H Gutmann; Nancy Ratner
Large-scale molecular comparison of human schwann cells to malignant peripheral nerve sheath tumor cell lines and tissues.
Cancer research 2006;66(5):2584-91.
2005: anil jegga; Ashima Gupta; Sivakumar Gowrisankar; Mrunal A Deshmukh; Steven Connolly; Kevin Finley; Bruce Aronow
CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes.
Nucleic acids research 2005;33(Web Server issue):W408-11.
2005: Sankaranand S Vukkadapu; Jenine M Belli; Koji Ishii; anil jegga; John J Hutton; Bruce Aronow; Jonathan D Katz
Dynamic interaction between T cell-mediated beta-cell damage and beta-cell repair in the run up to autoimmune diabetes of the NOD mouse.
Physiological genomics 2005;21(2):201-11.
2004: Giuseppina Bonizzi; Magali Bebien; Otero Dennis; Kirsten E Johnson-Vroom; Yixue Cao; Dung M Vu; anil jegga; Bruce Aronow; riya ghosh; Robert C Rickert; Michael Karin
Activation of IKKalpha target genes depends on recognition of specific kappaB binding sites by RelB:p52 dimers.
The EMBO journal 2004;23(21):4202-10.
2004: John J Hutton; anil jegga; Sue Kong; Ashima Gupta; Catherine L Ebert; Sarah Williams; Jonathan D Katz; Bruce Aronow
Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system.
BMC genomics 2004;5():82.
2004: Robert Livingston; Andrew von Niederhausern; anil jegga; Dana C Crawford; Christopher S Carlson; Mark J Rieder; Sivakumar Gowrisankar; Bruce Aronow; Robert B Weiss; Deborah A Nickerson
Pattern of sequence variation across 213 environmental response genes.
Genome research 2004;14(10A):1821-31.
2004: Jianhua Zhang; Amy E Moseley; anil jegga; Ashima Gupta; David P Witte; Maureen Sartor; Mario Medvedovic; Sarah S Williams; Cathy Ley-Ebert; Lique M Coolen; Gregory Egnaczyk; Mary Beth Genter; Michael N Lehman; Jerry B Lingrel; John E Maggio; Linda Parysek; Ryan Walsh; Mingli Xu; Bruce Aronow
Neural system-enriched gene expression: relationship to biological pathways and neurological diseases.
Physiological genomics 2004;18(2):167-83.
2004: Jung-whan Kim; Karen I Zeller; Yunyue Wang; anil jegga; Bruce Aronow; Kathryn A O'Donnell; Chi Dang
Evaluation of myc E-box phylogenetic footprints in glycolytic genes by chromatin immunoprecipitation assays.
Molecular and cellular biology 2004;24(13):5923-36.
2003: Mary Beth Genter; Paul P Van Veldhoven; anil jegga; Bhuvaneswari Sakthivel; Sue Kong; Kristin Stanley; David P Witte; Catherine L Ebert; Bruce Aronow
Microarray-based discovery of highly expressed olfactory mucosal genes: potential roles in the various functions of the olfactory system.
Physiological genomics 2003;16(1):67-81.
2003: Karen I Zeller; anil jegga; Bruce Aronow; Kathryn A O'Donnell; Chi Dang
An integrated database of genes responsive to the Myc oncogenic transcription factor: identification of direct genomic targets.
Genome biology 2003;4(10):R69.
2002: anil jegga; Shawn P Sherwood; James W Carman; Andrew T Pinski; Jerry L Phillips; John P Pestian; Bruce Aronow
Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.
Genome research 2002;12(9):1408-17.
2002: Mary Ann Warren; Amy Koshoffer; Bruce Aronow; anil jegga; Robert Brackenbury
Structure of the 5' portion of the human plakoglobin gene.
The Journal of investigative dermatology 2002;119(1):196-7.
2002: Michael D Bates; Christopher R Erwin; L Philip Sanford; Dan A Wiginton; Jorge A Bezerra; Lynn C Schatzman; anil jegga; Cathy Ley-Ebert; Sarah S Williams; Kris A Steinbrecher; Brad W Warner; Mitchell B Cohen; Bruce Aronow
Novel genes and functional relationships in the adult mouse gastrointestinal tract identified by microarray analysis.
Gastroenterology 2002;122(5):1467-82.