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Robert Murphy
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Network (preview)
8
Boland, Michael
5
Velliste, Meel
4
Zhao, Ting
3
Schober, Daniela
3
Bayer, Nora
3
Chen, Xiang
3
Fuchs, Renate
2
Cohen, William
2
Berget, Peter
2
Blaas, Dieter
2
Jones, Elizabeth
2
Lanni, Frederick
2
Linstedt, Adam
2
McNeil, Paul
2
Markey, Mia
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All Publications
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2008: Qian Yuntao; Murphy Robert F
Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models.
Bioinformatics (Oxford, England) 2008;24(4):569-76.
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2007: Zhao Ting; Murphy Robert F
Automated learning of generative models for subcellular location: building blocks for systems biology.
Cytometry. Part A : the journal of the International Society for Analytical Cytology 2007;71(12):978-90.
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2007: Chen Shann-Ching; Zhao Ting; Gordon Geoffrey J; Murphy Robert F
Automated image analysis of protein localization in budding yeast.
Bioinformatics (Oxford, England) 2007;23(13):i66-71.
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2007: García Osuna Elvira; Hua Juchang; Bateman Nicholas W; Zhao Ting; Berget Peter B; Murphy Robert F
Large-scale automated analysis of location patterns in randomly tagged 3T3 cells.
Annals of biomedical engineering 2007;35(6):1081-7.
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2007: Glory Estelle; Murphy Robert F
Automated subcellular location determination and high-throughput microscopy.
Developmental cell 2007;12(1):7-16.
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2007: Kou Zhenzhen; Cohen William W; Murphy Robert F
A stacked graphical model for associating sub-images with sub-captions.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2007;():257-68.
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2007: García Osuna Elvira; Murphy Robert F
Automated, systematic determination of protein subcellular location using fluorescence microscopy.
Sub-cellular biochemistry 2007;43():263-76.
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2007: Chebira Amina; Barbotin Yann; Jackson Charles; Merryman Thomas; Srinivasa Gowri; Murphy Robert F; Kovacevic Jelena
A multiresolution approach to automated classification of protein subcellular location images.
BMC bioinformatics 2007;8():210.
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2006: Murphy Robert F
Putting proteins on the map.
Nature biotechnology 2006;24(10):1223-4.
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2006: Wang Yu-li; Hahn Klaus M; Murphy Robert F; Horwitz Alan F
From imaging to understanding: Frontiers in Live Cell Imaging, Bethesda, MD, April 19-21, 2006.
The Journal of cell biology 2006;174(4):481-4.
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2006: Chen Xiang; Velliste Meel; Murphy Robert F
Automated interpretation of subcellular patterns in fluorescence microscope images for location proteomics.
Cytometry. Part A : the journal of the International Society for Analytical Cytology 2006;69(7):631-40.
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2006: Chen Xiang; Murphy Robert F
Automated interpretation of protein subcellular location patterns.
International review of cytology 2006;249():193-227.
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2006: Chen Shann-Ching; Murphy Robert F
A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images.
BMC bioinformatics 2006;7():90.
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2005: Zhao Ting; Velliste Meel; Boland Michael V; Murphy Robert F
Object type recognition for automated analysis of protein subcellular location.
IEEE transactions on image processing : a publication of the IEEE Signal Processing Society 2005;14(9):1351-9.
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2005: Murphy Robert F
Cytomics and location proteomics: automated interpretation of subcellular patterns in fluorescence microscope images.
Cytometry. Part A : the journal of the International Society for Analytical Cytology 2005;67(1):1-3.
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2005: Nair Prashant; Schaub Beat E; Huang Kai; Chen Xiang; Murphy Robert F; Griffith Janice M; Geuze Hans J; Rohrer Jack
Characterization of the TGN exit signal of the human mannose 6-phosphate uncovering enzyme.
Journal of cell science 2005;118(Pt 13):2949-56.
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2005: Chen Xiang; Murphy Robert F
Objective clustering of proteins based on subcellular location patterns.
Journal of biomedicine & biotechnology 2005;2005(2):87-95.
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2005: Kou Zhenzhen; Cohen William W; Murphy Robert F
High-recall protein entity recognition using a dictionary.
Bioinformatics (Oxford, England) 2005;21 Suppl 1():i266-73.
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2005: Murphy R F
Location proteomics: a systems approach to subcellular location.
Biochemical Society transactions 2005;33(Pt 3):535-8.
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2005: Baravalle Günther; Schober Daniela; Huber Marlis; Bayer Nora; Murphy Robert F; Fuchs Renate
Transferrin recycling and dextran transport to lysosomes is differentially affected by bafilomycin, nocodazole, and low temperature.
Cell and tissue research 2005;320(1):99-113.
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2005: Brabec Marianne; Schober Daniela; Wagner Ernst; Bayer Nora; Murphy Robert F; Blaas Dieter; Fuchs Renate
Opening of size-selective pores in endosomes during human rhinovirus serotype 2 in vivo uncoating monitored by single-organelle flow analysis.
Journal of virology 2005;79(2):1008-16.
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2004: Huang Kai; Murphy Robert F
From quantitative microscopy to automated image understanding.
Journal of biomedical optics 2004;9(5):893-912.
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2004: Hu Yanhua; Murphy Robert F
Automated interpretation of subcellular patterns from immunofluorescence microscopy.
Journal of immunological methods 2004;290(1-2):93-105.
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2004: Huang Kai; Murphy Robert F
Boosting accuracy of automated classification of fluorescence microscope images for location proteomics.
BMC bioinformatics 2004;5():78.
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2004: Murphy Robert F
Automated interpretation of protein subcellular location patterns: implications for early cancer detection and assessment.
Annals of the New York Academy of Sciences 2004;1020():124-31.
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2004: Puri Sapna; Telfer Helena; Velliste Meel; Murphy Robert F; Linstedt Adam D
Dispersal of Golgi matrix proteins during mitotic Golgi disassembly.
Journal of cell science 2004;117(Pt 3):451-6.
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2002: Telmer C A; Berget P B; Ballou B; Murphy R F; Jarvik J W
Epitope tagging genomic DNA using a CD-tagging Tn10 minitransposon.
BioTechniques 2002;32(2):422-4, 426, 428-30.
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2002: Roques Edward J S; Murphy Robert F
Objective evaluation of differences in protein subcellular distribution.
Traffic (Copenhagen, Denmark) 2002;3(1):61-5.
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2002: Price Jeffrey H; Goodacre Angela; Hahn Klaus; Hodgson Louis; Hunter Edward A; Krajewski Stanislaw; Murphy Robert F; Rabinovich Andrew; Reed John C; Heynen Susanne
Advances in molecular labeling, high throughput imaging and machine intelligence portend powerful functional cellular biochemistry tools.
Journal of cellular biochemistry. Supplement 2002;39():194-210.
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2001: Boland M V; Murphy R F
A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells.
Bioinformatics (Oxford, England) 2001;17(12):1213-23.
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2001: Jesch S A; Mehta A J; Velliste M; Murphy R F; Linstedt A D
Mitotic Golgi is in a dynamic equilibrium between clustered and free vesicles independent of the ER.
Traffic (Copenhagen, Denmark) 2001;2(12):873-84.
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2001: Boland M V; Murphy R F
Multivariate analysis.
Current protocols in cytometry / editorial board, J. Paul Robinson, managing editor ... [et al.] 2001;Chapter 10():Unit 10.8.
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2000: Murphy R F; Boland M V; Velliste M
Towards a systematics for protein subcelluar location: quantitative description of protein localization patterns and automated analysis of fluorescence microscope images.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 2000;8():251-9.
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1999: Boland M V; Murphy R F
After sequencing: quantitative analysis of protein localization.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 1999;18(5):115-9.
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1999: Boland M V; Murphy R F
Automated analysis of patterns in fluorescence-microscope images.
Trends in cell biology 1999;9(5):201-2.
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1999: Markey M K; Boland M V; Murphy R F
Toward objective selection of representative microscope images.
Biophysical journal 1999;76(4):2230-7.
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1998: Bayer N; Schober D; Prchla E; Murphy R F; Blaas D; Fuchs R
Effect of bafilomycin A1 and nocodazole on endocytic transport in HeLa cells: implications for viral uncoating and infection.
Journal of virology 1998;72(12):9645-55.
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1998: Boland M V; Markey M K; Murphy R F
Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images.
Cytometry 1998;33(3):366-75.
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1998: Rybak S L; Murphy R F
Primary cell cultures from murine kidney and heart differ in endosomal pH.
Journal of cellular physiology 1998;176(1):216-22.
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1997: Rybak S L; Lanni F; Murphy R F
Theoretical considerations on the role of membrane potential in the regulation of endosomal pH.
Biophysical journal 1997;73(2):674-87.
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1997: Seamer L C; Bagwell C B; Barden L; Redelman D; Salzman G C; Wood J C; Murphy R F
Proposed new data file standard for flow cytometry, version FCS 3.0.
Cytometry 1997;28(2):118-22.
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1994: Bucci M; Moyer T W; Brown C M; Wilson R B; Murphy R F
The receptor-recycling and lysosome biogenesis mutant TfT1.11 belongs to a new complementation group, End6.
Somatic cell and molecular genetics 1994;20(1):47-54.
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1994: Brockman S A; Murphy R F
Isolation and analysis of somatic cell mutants with defects in endocytic traffic.
Methods in cell biology 1994;42 Pt B():131-48.
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1993: Wilson R B; Mastick C C; Murphy R F
A Chinese hamster ovary cell line with a temperature-conditional defect in receptor recycling is pleiotropically defective in lysosome biogenesis.
The Journal of biological chemistry 1993;268(34):25357-63.
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1993: Murphy R F; Schmid J; Fuchs R
Endosome maturation: insights from somatic cell genetics and cell-free analysis.
Biochemical Society transactions 1993;21 ( Pt 3)(3):716-20.
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1991: Murphy R F
Maturation models for endosome and lysosome biogenesis.
Trends in cell biology 1991;1(4):77-82.
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1991: Cain C C; Wilson R B; Murphy R F
Isolation by fluorescence-activated cell sorting of Chinese hamster ovary cell lines with pleiotropic, temperature-conditional defects in receptor recycling.
The Journal of biological chemistry 1991;266(18):11746-52.
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1991: Sipe D M; Murphy R F
Binding to cellular receptors results in increased iron release from transferrin at mildly acidic pH.
The Journal of biological chemistry 1991;266(13):8002-7.
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1991: Sipe D M; Jesurum A; Murphy R F
Absence of Na+,K(+)-ATPase regulation of endosomal acidification in K562 erythroleukemia cells. Analysis via inhibition of transferrin recycling by low temperatures.
The Journal of biological chemistry 1991;266(6):3469-74.
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1990: Roederer M; Barry J R; Wilson R B; Murphy R F
Endosomes can undergo an ATP-dependent density increase in the absence of dense lysosomes.
European journal of cell biology 1990;51(2):229-34.
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1990: Bowser R; Murphy R F
Kinetics of hydrolysis of endocytosed substrates by mammalian cultured cells: early introduction of lysosomal enzymes into the endocytic pathway.
Journal of cellular physiology 1990;143(1):110-7.
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1990: Dean P N; Bagwell C B; Lindmo T; Murphy R F; Salzman G C
Introduction to flow cytometry data file standard.
Cytometry 1990;11(3):321-2.
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1989: Preston R A; Murphy R F; Jones E W
Assay of vacuolar pH in yeast and identification of acidification-defective mutants.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(18):7027-31.
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1989: Abramowsky C R; Taylor S R; Anton A H; Berk A I; Roederer M; Murphy R F
Flow cytometry DNA ploidy analysis and catecholamine secretion profiles in neuroblastoma.
Cancer 1989;63(9):1752-6.
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1989: Roederer M; Mays R W; Murphy R F
Effect of confluence on endocytosis by 3T3 fibroblasts: increased rate of pinocytosis and accumulation of residual bodies.
European journal of cell biology 1989;48(1):37-44.
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1989: Cain C C; Sipe D M; Murphy R F
Regulation of endocytic pH by the Na+,K+-ATPase in living cells.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(2):544-8.
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1989: Wilson R B; Murphy R F
Flow-cytometric analysis of endocytic compartments.
Methods in cell biology 1989;31():293-317.
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1988: Taylor S R; Blatt J; Costantino J P; Roederer M; Murphy R F
Flow cytometric DNA analysis of neuroblastoma and ganglioneuroma. A 10-year retrospective study.
Cancer 1988;62(4):749-54.
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1988: Cain C C; Murphy R F
A chloroquine-resistant Swiss 3T3 cell line with a defect in late endocytic acidification.
The Journal of cell biology 1988;106(2):269-77.
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1987: Preston R A; Murphy R F; Jones E W
Apparent endocytosis of fluorescein isothiocyanate-conjugated dextran by Saccharomyces cerevisiae reflects uptake of low molecular weight impurities, not dextran.
The Journal of cell biology 1987;105(5):1981-7.
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1987: Sipe D M; Murphy R F
High-resolution kinetics of transferrin acidification in BALB/c 3T3 cells: exposure to pH 6 followed by temperature-sensitive alkalinization during recycling.
Proceedings of the National Academy of Sciences of the United States of America 1987;84(20):7119-23.
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1987: Taylor S R; Roederer M; Murphy R F
Flow cytometric DNA analysis of adrenocortical tumors in children.
Cancer 1987;59(12):2059-63.
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1987: Roederer M; Bowser R; Murphy R F
Kinetics and temperature dependence of exposure of endocytosed material to proteolytic enzymes and low pH: evidence for a maturation model for the formation of lysosomes.
Journal of cellular physiology 1987;131(2):200-9.
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1986: Roederer M; Murphy R F
Cell-by-cell autofluorescence correction for low signal-to-noise systems: application to epidermal growth factor endocytosis by 3T3 fibroblasts.
Cytometry 1986;7(6):558-65.
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1986: Cain C C; Murphy R F
Growth inhibition of 3T3 fibroblasts by lysosomotropic amines: correlation with effects on intravesicular pH but not vacuolation.
Journal of cellular physiology 1986;129(1):65-70.
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1986: Fechheimer M; Denny C; Murphy R F; Taylor D L
Measurement of cytoplasmic pH in Dictyostelium discoideum by using a new method for introducing macromolecules into living cells.
European journal of cell biology 1986;40(2):242-7.
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1985: Murphy R F
Analysis and isolation of endocytic vesicles by flow cytometry and sorting: demonstration of three kinetically distinct compartments involved in fluid-phase endocytosis.
Proceedings of the National Academy of Sciences of the United States of America 1985;82(24):8523-6.
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1985: Murphy R F
Automated identification of subpopulations in flow cytometric list mode data using cluster analysis.
Cytometry 1985;6(4):302-9.
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1985: McNeil P L; Kennedy A L; Waggoner A S; Taylor D L; Murphy R F
Light-scattering changes during chemotactic stimulation of human neutrophils: kinetics followed by flow cytometry.
Cytometry 1985;6(1):7-12.
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1984: Murphy R F; Bisaccia E; Cantor C R; Berger C; Edelson R L
Internalization and acidification of insulin by activated human lymphocytes.
Journal of cellular physiology 1984;121(2):351-6.
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1984: Hiddemann W; Schumann J; Andreef M; Barlogie B; Herman C J; Leif R C; Mayall B H; Murphy R F; Sandberg A A
Convention on nomenclature for DNA cytometry. Committee on Nomenclature, Society for Analytical Cytology.
Cancer genetics and cytogenetics 1984;13(2):181-3.
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1984: Murphy R F; Tse D B; Cantor C R; Pernis B
Acidification of internalized class I major histocompatibility complex antigen by T lymphoblasts.
Cellular immunology 1984;88(2):336-42.
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1984: Murphy R F; Chused T M
A proposal for a flow cytometric data file standard.
Cytometry 1984;5(5):553-5.
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1984: Murphy R F; Powers S; Cantor C R; Pollack R
Reduced insulin endocytosis in serum-transformed fibroblasts demonstrated by flow cytometry.
Cytometry 1984;5(3):275-80.
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1984: Murphy R F; Powers S; Cantor C R
Endosome pH measured in single cells by dual fluorescence flow cytometry: rapid acidification of insulin to pH 6.
The Journal of cell biology 1984;98(5):1757-62.
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1984: McNeil P L; Murphy R F; Lanni F; Taylor D L
A method for incorporating macromolecules into adherent cells.
The Journal of cell biology 1984;98(4):1556-64.
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1982: Haas R; Murphy R F; Cantor C R
Testing models of the arrangement of DNA inside bacteriophage lambda by crosslinking the packaged DNA.
Journal of molecular biology 1982;159(1):71-92.
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1982: Murphy R F; Powers S; Verderame M; Cantor C R; Pollack R
Flow cytofluorometric analysis of insulin binding and internalization by Swiss 3T3 cells.
Cytometry 1982;2(6):402-6.
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1982: Murphy R F; Jorgensen E D; Cantor C R
Kinetics of histone endocytosis in Chinese hamster ovary cells. A flow cytofluorometric analysis.
The Journal of biological chemistry 1982;257(4):1695-701.
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1981: Murphy R F; Daban J R; Cantor C R
Flow cytofluorometric analysis of the nuclear division cycle of Physarum polycephalum plasmodia.
Cytometry 1981;2(1):26-30.
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1980: Murphy R F; Wallace R B; Bonner J
Isolation of newly replicated chromatin by using shallow metrizamide gradients.
Proceedings of the National Academy of Sciences of the United States of America 1980;77(6):3336-40.
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