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David Witherspoon

Research Profile

Chemicals & Drugs

Phenomena

Evolution, Molecular

Concepts & Ideas

Genes & Molecular Sequences

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Publications

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Chad D Huff; Lynn B Jorde; Subra Kugathasan; Tatum S Simonson; W Scott Watkins; April Whiting; David Witherspoon; Wilfred Wu; Jinchuan Xing; Yuhua Zhang; Michael Bamshad; Jonathan P Bradfield; Kazima Bulayeva or Bulaeva; Chadwick T Davis; Lee A Denson; Chandler Gatenbee; Hakon Hakonarson; Stephen L Guthery
Crohn's disease and genetic hitchhiking at IBD5.
Chad D Huff; David Witherspoon; Tatum S Simonson; Jinchuan Xing; W Scott Watkins; Yuhua Zhang; Therese M Tuohy; Deborah W Neklason; Randall W Burt; Stephen L Guthery; Scott R Woodward; Lynn B Jorde
Maximum-likelihood estimation of recent shared ancestry (ERSA).
Chad D Huff; Jinchuan Xing; Alan R Rogers; David Witherspoon; Lynn B Jorde
Mobile elements reveal small population size in the ancient ancestors of Homo sapiens.

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All Publications

2012: Chad D Huff; Lynn B Jorde; Subra Kugathasan; Tatum S Simonson; W Scott Watkins; April Whiting; David Witherspoon; Wilfred Wu; Jinchuan Xing; Yuhua Zhang; Michael Bamshad; Jonathan P Bradfield; Kazima Bulayeva or Bulaeva; Chadwick T Davis; Lee A Denson; Chandler Gatenbee; Hakon Hakonarson; Stephen L Guthery
Crohn's disease and genetic hitchhiking at IBD5.
Molecular biology and evolution 2012;29(1):101-11.
2011: Chad D Huff; David Witherspoon; Tatum S Simonson; Jinchuan Xing; W Scott Watkins; Yuhua Zhang; Therese M Tuohy; Deborah W Neklason; Randall W Burt; Stephen L Guthery; Scott R Woodward; Lynn B Jorde
Maximum-likelihood estimation of recent shared ancestry (ERSA).
Genome research 2011;21(5):768-74.
2010: Chad D Huff; Jinchuan Xing; Alan R Rogers; David Witherspoon; Lynn B Jorde
Mobile elements reveal small population size in the ancient ancestors of Homo sapiens.
Proceedings of the National Academy of Sciences of the United States of America 2010;107(5):2147-52.
2010: David Witherspoon; Jinchuan Xing; Yuhua Zhang; W Scott Watkins; Mark A Batzer; Lynn B Jorde
Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.
BMC genomics 2010;11():410.
2009: Jinchuan Xing; W Scott Watkins; David Witherspoon; Yuhua Zhang; Stephen L Guthery; Rangaswamy Thara; Bryan J Mowry; Kazima Bulayeva or Bulaeva; Robert B Weiss; Lynn B Jorde
Fine-scaled human genetic structure revealed by SNP microarrays.
Genome research 2009;19(5):815-25.
2009: David Witherspoon; W Scott Watkins; Yuhua Zhang; Jinchuan Xing; Whitney L Tolpinrud; Dale Hedges; Mark A Batzer; Lynn B Jorde
Alu repeats increase local recombination rates.
BMC genomics 2009;10():530.
2007: David Witherspoon; Stephen Wooding; Alan R Rogers; EE Marchani; W Scott Watkins; Mark A Batzer; Lynn B Jorde
Genetic similarities within and between human populations.
Genetics 2007;176(1):351-9.
2007: Jinchuan Xing; David Witherspoon; David A Ray; Mark A Batzer; Lynn B Jorde
Mobile DNA elements in primate and human evolution.
American journal of physical anthropology 2007;Suppl 45():2-19.
2006: David Witherspoon; EE Marchani; W Scott Watkins; Christopher T Ostler; Stephen Wooding; Bridget A Anders; Justin D Fowlkes; Stéphane Boissinot; Anthony V Furano; David A Ray; Alan R Rogers; Mark A Batzer; Lynn B Jorde
Human population genetic structure and diversity inferred from polymorphic L1(LINE-1) and Alu insertions.
Human heredity 2006;62(1):30-46.
2005: Dale Hedges; Richard Cordaux; Jinchuan Xing; David Witherspoon; Alan R Rogers; Lynn B Jorde; Mark A Batzer
Modeling the amplification dynamics of human Alu retrotransposons.
PLoS computational biology 2005;1(4):e44.
2004: Takuro Sakagami; David Witherspoon; Toshiaki Nakajima; Nobuyoshi Jinnai; Stephen Wooding; Lynn B Jorde; Takashi Hasegawa; E Suzuki; Fumitake Gejyo; Ituro Inoue
Local adaptation and population differentiation at the interleukin 13 and interleukin 4 loci.
Genes and immunity 2004;5(5):389-97.
2004: Elizabeth G Barry; David Witherspoon; David J Lampe
A bacterial genetic screen identifies functional coding sequences of the insect mariner transposable element Famar1 amplified from the genome of the earwig, Forficula auricularia.
Genetics 2004;166(2):823-33.
2003: Abdel Halim Salem; David A Ray; Jinchuan Xing; Pauline A Callinan; Jeremy S Myers; Dale Hedges; Randall K Garber; David Witherspoon; Lynn B Jorde; Mark A Batzer
Alu elements and hominid phylogenetics.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(22):12787-91.
2003: David Witherspoon; Hugh M Robertson
Neutral evolution of ten types of mariner transposons in the genomes of Caenorhabditis elegans and Caenorhabditis briggsae.
Journal of molecular evolution 2003;56(6):751-69.
2003: David J Lampe; David Witherspoon; Felipe N Soto-Adames; Hugh M Robertson
Recent horizontal transfer of mellifera subfamily mariner transposons into insect lineages representing four different orders shows that selection acts only during horizontal transfer.
Molecular biology and evolution 2003;20(4):554-62.
2003: Thomas G Doak; David Witherspoon; Carolyn L Jahn; Glenn Herrick
Selection on the genes of Euplotes crassus Tec1 and Tec2 transposons: evolutionary appearance of a programmed frameshift in a Tec2 gene encoding a tyrosine family site-specific recombinase.
Eukaryotic cell 2003;2(1):95-102.
1999: David Witherspoon
Selective constraints on P-element evolution.
Molecular biology and evolution 1999;16(4):472-8.
1997: David Witherspoon; Thomas G Doak; Kevin R Williams; A Seegmiller; Jon Seger; Glenn Herrick
Selection on the protein-coding genes of the TBE1 family of transposable elements in the ciliates Oxytricha fallax and O. trifallax.
Molecular biology and evolution 1997;14(7):696-706.
1997: Thomas G Doak; David Witherspoon; F P Doerder; K Williams; Glenn Herrick
Conserved features of TBE1 transposons in ciliated protozoa.
Genetica 1997;101(2):75-86.
1996: A Seegmiller; K R Williams; R L Hammersmith; Thomas G Doak; David Witherspoon; T Messick; L L Storjohann; Glenn Herrick
Internal eliminated sequences interrupting the Oxytricha 81 locus: allelic divergence, conservation, conversions, and possible transposon origins.
Molecular biology and evolution 1996;13(10):1351-62.