FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Andrey Rzhetsky

Research Profile

Concepts & Ideas

Occupations

Computational Biology

Activities & Behaviors

Chemicals & Drugs

Proteins

Physiology

Genes & Molecular Sequences

Phenomena

Evolution, Molecular

Procedures

Chromosome Mapping

Co-author Network

Publications

TOP 3
Anna Divoli; James A Evans; Eneida A Mendonca; Andrey Rzhetsky
Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis.
Andrey Rzhetsky; James A Evans
War of ontology worlds: mathematics, computer code, or Esperanto?
James A Evans; Andrey Rzhetsky
Advancing science through mining libraries, ontologies, and communities.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Andrey Rzhetsky (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2011: Anna Divoli; James A Evans; Eneida A Mendonca; Andrey Rzhetsky
Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis.
PLoS computational biology 2011;7(10):e1002132.
2011: Andrey Rzhetsky; James A Evans
War of ontology worlds: mathematics, computer code, or Esperanto?
PLoS computational biology 2011;7(9):e1002191.
2011: James A Evans; Andrey Rzhetsky
Advancing science through mining libraries, ontologies, and communities.
The Journal of biological chemistry 2011;286(27):23659-66.
2011: Larisa N Soldatova; Andrey Rzhetsky
Representation of research hypotheses.
Journal of biomedical semantics 2011;2 Suppl 2():S9.
2011: Lixia Yao; Anna Divoli; Ilya Mayzus; James A Evans; Andrey Rzhetsky
Benchmarking ontologies: bigger or better?
PLoS computational biology 2011;7(1):e1001055.
2010: James Evans; Andrey Rzhetsky
Philosophy of science. Machine science.
Science (New York, N.Y.) 2010;329(5990):399-400.
2010: Lixia Yao; James A Evans; Andrey Rzhetsky
Novel opportunities for computational biology and sociology in drug discovery.
Trends in biotechnology 2010;28(4):161-70.
2009: Ivan Iossifov; Raul Rodriguez-Esteban; Ilya Mayzus; Kathleen J Millen; Andrey Rzhetsky
Looking at cerebellar malformations through text-mined interactomes of mice and humans.
PLoS computational biology 2009;5(11):e1000559.
2009: Lixia Yao; James A Evans; Andrey Rzhetsky
Novel opportunities for computational biology and sociology in drug discovery.
Trends in biotechnology 2009;27(9):531-40.
2009: Andrey Rzhetsky; Michael Seringhaus; Mark B Gerstein
Getting started in text mining: part two.
PLoS computational biology 2009;5(7):e1000411.
2009: Andrey Rzhetsky; Hagit Shatkay; W John Wilbur
How to get the most out of your curation effort.
PLoS computational biology 2009;5(5):e1000391.
2009: Jiang Liu; Murad Ghanim; Lei Xue; Christopher D Brown; Ivan Iossifov; Cesar Angeletti; Sujun Hua; Nicolas Nègre; Michael Ludwig; Thomas Stricker; Hikmat Al-Ahmadie; Maria Tretiakova; Robert L Camp; Montse Perera-Alberto; David L Rimm; Tian Xu; Andrey Rzhetsky; Kevin P White
Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer.
Science (New York, N.Y.) 2009;323(5918):1218-22.
2008: Hagit Shatkay; Fengxia Pan; Andrey Rzhetsky; W John Wilbur
Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users.
Bioinformatics (Oxford, England) 2008;24(18):2086-93.
2008: Andrey Rzhetsky; Michael Seringhaus; Mark Gerstein
Seeking a new biology through text mining.
Cell 2008;134(1):9-13.
2008: Ivan Iossifov; Tian Zheng; M Baron; T Conrad Gilliam; Andrey Rzhetsky
Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network.
Genome research 2008;18(7):1150-62.
2008: Igor Feldman; Andrey Rzhetsky; Dennis Vitkup
Network properties of genes harboring inherited disease mutations.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(11):4323-8.
2008: Raul Rodriguez-Esteban; Andrey Rzhetsky
Six senses in the literature. The bleak sensory landscape of biomedical texts.
EMBO reports 2008;9(3):212-5.
2008: Lixia Yao; Andrey Rzhetsky
Quantitative systems-level determinants of human genes targeted by successful drugs.
Genome research 2008;18(2):206-13.
2007: Andrey Rzhetsky; David Wajngurt; Naeun Park; Tian Zheng
Probing genetic overlap among complex human phenotypes.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(28):11694-9.
2007: Murat Cokol; Ivan Iossifov; Raul Rodriguez-Esteban; Andrey Rzhetsky
How many scientific papers should be retracted?
EMBO reports 2007;8(5):422-3.
2007: Murat Cokol; Raul Rodriguez-Esteban; Andrey Rzhetsky
A recipe for high impact.
Genome biology 2007;8(5):406.
2006: Raul Rodriguez-Esteban; Ivan Iossifov; Andrey Rzhetsky
Imitating manual curation of text-mined facts in biomedicine.
PLoS computational biology 2006;2(9):e118.
2006: Andrey Rzhetsky; Ivan Iossifov; Ji Meng Loh; Kevin P White
Microparadigms: chains of collective reasoning in publications about molecular interactions.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(13):4940-5.
2006: Andrey Rzhetsky; Tian Zheng; Chani Weinreb
Self-correcting maps of molecular pathways.
PloS one 2006;1():e61.
2006: W John Wilbur; Andrey Rzhetsky; Hagit Shatkay
New directions in biomedical text annotation: definitions, guidelines and corpus construction.
BMC bioinformatics 2006;7():356.
2005: Murat Cokol; Ivan Iossifov; Chani Weinreb; Andrey Rzhetsky
Emergent behavior of growing knowledge about molecular interactions.
Nature biotechnology 2005;23(10):1243-7.
2005: Andrey Rzhetsky; Walter M Fitch
Listening to viral tongues: comparing viral trees using a stochastic context-free grammar.
Molecular biology and evolution 2005;22(4):905-13.
2004: Michael Krauthammer; Charles A Kaufmann; T Conrad Gilliam; Andrey Rzhetsky
Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(42):15148-53.
2004: Ivan Iossifov; Michael Krauthammer; Carol Friedman; Vasileios Hatzivassiloglou; Joel S Bader; Kevin P White; Andrey Rzhetsky
Probabilistic inference of molecular networks from noisy data sources.
Bioinformatics (Oxford, England) 2004;20(8):1205-13.
2004: Andrey Rzhetsky; Ivan Iossifov; Tomohiro Koike; Michael Krauthammer; Pauline Kra; Mitzi Morris; Hong Yu; Pablo Ariel Duboué; Wubin Weng; W John Wilbur; Vasileios Hatzivassiloglou; Carol Friedman
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data.
Journal of biomedical informatics 2004;37(1):43-53.
2003: Shawn Gomez; William Stafford Noble; Andrey Rzhetsky
Learning to predict protein-protein interactions from protein sequences.
Bioinformatics (Oxford, England) 2003;19(15):1875-81.
2003: Charles W Roth; Inge Holm; Marine Graille; Pierre Dehoux; Andrey Rzhetsky; Patrick Wincker; Jean Weissenbach; Paul T Brey
Identification of the Anopheles gambiae ATP-binding cassette transporter superfamily genes.
Molecules and cells 2003;15(2):150-8.
2002: Hong Yu; Vasileios Hatzivassiloglou; Andrey Rzhetsky; W John Wilbur
Automatically identifying gene/protein terms in MEDLINE abstracts.
Journal of biomedical informatics 2002;35(5-6):322-30.
2002: Carol Friedman; Pauline Kra; Andrey Rzhetsky
Two biomedical sublanguages: a description based on the theories of Zellig Harris.
Journal of biomedical informatics 2002;35(4):222-35.
2002: Hong Yu; Vasileios Hatzivassiloglou; Carol Friedman; Andrey Rzhetsky; W John Wilbur
Automatic extraction of gene and protein synonyms from MEDLINE and journal articles.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():919-23.
2002: Georgy P Karev; Yuri I Wolf; Andrey Rzhetsky; Faina S Berezovskaya; Eugene V Koonin
Birth and death of protein domains: a simple model of evolution explains power law behavior.
BMC evolutionary biology 2002;2():18.
2002: Michael Krauthammer; Pauline Kra; Ivan Iossifov; Shawn Gomez; George Hripcsak; Vasileios Hatzivassiloglou; Carol Friedman; Andrey Rzhetsky
Of truth and pathways: chasing bits of information through myriads of articles.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S249-57.
2002: Shawn Gomez; Andrey Rzhetsky
Towards the prediction of complete protein--protein interaction networks.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2002;():413-24.
2001: Shawn Gomez; S H Lo; Andrey Rzhetsky
Probabilistic prediction of unknown metabolic and signal-transduction networks.
Genetics 2001;159(3):1291-8.
2001: Andrey Rzhetsky; Shawn Gomez
Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.
Bioinformatics (Oxford, England) 2001;17(10):988-96.
2001: Jaana Tammur; C Prades; Isabelle Arnould; Andrey Rzhetsky; A Hutchinson; M Adachi; J D Schuetz; Kathryn J Swoboda; LJ Ptácek; Marie Rosier; M Dean; Rando Allikmets
Two new genes from the human ATP-binding cassette transporter superfamily, ABCC11 and ABCC12, tandemly duplicated on chromosome 16q12.
Gene 2001;273(1):89-96.
2001: M Dean; Andrey Rzhetsky; R Allikmets
The human ATP-binding cassette (ABC) transporter superfamily.
Genome research 2001;11(7):1156-66.
2001: K Scott; R Brady; A Cravchik; Pavel Morozov; Andrey Rzhetsky; C Zuker; Richard Axel
A chemosensory gene family encoding candidate gustatory and olfactory receptors in Drosophila.
Cell 2001;104(5):661-73.
2001: T Annilo; Jaana Tammur; Amy Hutchinson; Andrey Rzhetsky; M Dean; Rando Allikmets
Human and mouse orthologs of a new ATP-binding cassette gene, ABCG4.
Cytogenetics and cell genetics 2001;94(3-4):196-201.
2001: Vasileios Hatzivassiloglou; P A Duboué; Andrey Rzhetsky
Disambiguating proteins, genes, and RNA in text: a machine learning approach.
Bioinformatics (Oxford, England) 2001;17 Suppl 1():S97-106.
2001: Carol Friedman; Pauline Kra; Hong Yu; Michael Krauthammer; Andrey Rzhetsky
GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.
Bioinformatics (Oxford, England) 2001;17 Suppl 1():S74-82.
2001: Andrey Rzhetsky; Pavel Morozov
Markov chain Monte Carlo computation of confidence intervals for substitution-rate variation in proteins.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():203-14.
2000: Michael Krauthammer; Andrey Rzhetsky; Pavel Morozov; Carol Friedman
Using BLAST for identifying gene and protein names in journal articles.
Gene 2000;259(1-2):245-52.
2000: T Koike; Andrey Rzhetsky
A graphic editor for analyzing signal-transduction pathways.
Gene 2000;259(1-2):235-44.
2000: Andrey Rzhetsky; T Koike; Sergey Kalachikov; Shawn Gomez; Michael Krauthammer; S H Kaplan; Pauline Kra; James J Russo; Carol Friedman
A knowledge model for analysis and simulation of regulatory networks.
Bioinformatics (Oxford, England) 2000;16(12):1120-8.
2000: Anna Migliazza; Eftihia Cayanis; F Bosch-Albareda; H Komatsu; Stefano Martinotti; Elena Toniato; Sergey Kalachikov; MF Bonaldo; P Jelene; X Ye; Andrey Rzhetsky; X Qu; Minchen Chien; Giorgio Inghirami; Gianluca Gaidano; Umberto Vitolo; Giuseppe Saglio; Luigi Resegotti; P Zhang; MB Soares; J Russo; SG Fischer; IS Edelman; Argiris Efstratiadis; Riccardo Dalla-Favera
Molecular pathogenesis of B-cell chronic lymphocytic leukemia: analysis of 13q14 chromosomal deletions.
Current topics in microbiology and immunology 2000;252():275-84.
2000: M David Tilson; Andrey Rzhetsky
A novel hypothesis regarding the evolutionary origins of the immunoglobulin fold.
Current medical research and opinion 2000;16(2):88-93.
2000: Pavel Morozov; T Sitnikova; Gary Churchill; F J Ayala; Andrey Rzhetsky
A new method for characterizing replacement rate variation in molecular sequences. Application of the Fourier and wavelet models to Drosophila and mammalian proteins.
Genetics 2000;154(1):381-95.
1999: Leslie B Vosshall; Hubert Amrein; Pavel Morozov; Andrey Rzhetsky; Richard Axel
A spatial map of olfactory receptor expression in the Drosophila antenna.
Cell 1999;96(5):725-36.
1998: Andrey Rzhetsky; Sergey Kalachikov; X Ye; P Zhang; James J Russo
Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects.
Gene 1998;208(1):31-5.
1998: A Yoshida; Andrey Rzhetsky; LC Hsu; Cheng Chang
Human aldehyde dehydrogenase gene family.
European journal of biochemistry / FEBS 1998;251(3):549-57.
1998: FJ Ayala; Andrey Rzhetsky; F J Ayala
Origin of the metazoan phyla: molecular clocks confirm paleontological estimates.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(2):606-11.
1998: X Y Qu; RS Hauptschein; Andrey Rzhetsky; Luigi Scotto; Minchen Chien; X Ye; Ferdinando Frigeri; Pulivarthi H Rao; Laura Pasqualucci; B Gamberi; L L Deaven; P Zhang; Raju S K Chaganti; Riccardo Dalla-Favera; James J Russo
Analysis of a 69-kb contiguous genomic sequence at a putative tumor suppressor gene locus on human chromosome 6q27.
DNA sequence : the journal of DNA sequencing and mapping 1998;9(4):189-204.
1997: Andrey Rzhetsky; FJ Ayala; LC Hsu; Cheng Chang; A Yoshida
Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(13):6820-5.
1996: Andrey Rzhetsky; J Dopazo; E Snyder; Charles A Dangler; F J Ayala
Assessing dissimilarity of genes by comparing their RNAse A mismatch cleavage patterns.
Genetics 1996;144(4):1975-83.
1996: Andrey Rzhetsky; T Sitnikova
When is it safe to use an oversimplified substitution model in tree-making?
Molecular biology and evolution 1996;13(9):1255-65.
1996: Sudhir Kumar; Andrey Rzhetsky
Evolutionary relationships of eukaryotic kingdoms.
Journal of molecular evolution 1996;42(2):183-93.
1995: Andrey Rzhetsky
Estimating substitution rates in ribosomal RNA genes.
Genetics 1995;141(2):771-83.
1995: N Takezaki; Andrey Rzhetsky; Masatoshi Nei
Phylogenetic test of the molecular clock and linearized trees.
Molecular biology and evolution 1995;12(5):823-33.
1995: T Sitnikova; Andrey Rzhetsky; Masatoshi Nei
Interior-branch and bootstrap tests of phylogenetic trees.
Molecular biology and evolution 1995;12(2):319-33.
1995: Andrey Rzhetsky; Sudhir Kumar; Masatoshi Nei
Four-cluster analysis: a simple method to test phylogenetic hypotheses.
Molecular biology and evolution 1995;12(1):163-7.
1995: Andrey Rzhetsky; Masatoshi Nei
Tests of applicability of several substitution models for DNA sequence data.
Molecular biology and evolution 1995;12(1):131-51.
1994: Andrey Rzhetsky; Masatoshi Nei
METREE: a program package for inferring and testing minimum-evolution trees.
Computer applications in the biosciences : CABIOS 1994;10(4):409-12.
1994: Andrey Rzhetsky; Masatoshi Nei
Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites.
Journal of molecular evolution 1994;38(3):295-9.
1993: Andrey Rzhetsky; Masatoshi Nei
Theoretical foundation of the minimum-evolution method of phylogenetic inference.
Molecular biology and evolution 1993;10(5):1073-95.
1992: Andrey Rzhetsky; Masatoshi Nei
Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference.
Journal of molecular evolution 1992;35(4):367-75.