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Yunlong Liu

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Oligonucleotide Array Sequence Analysis

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TOP 3
Marcus R Breese; Yunlong Liu
NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets.
Liran Juan; Susan E Clare; Milan Radovich; Bryan P Schneider; Guohua Wang; Yadong Wang; Yunlong Liu
Potential roles of microRNAs in regulating long intergenic noncoding RNAs.
Guohua Wang; Yuming Zhao; Liran Juan; Lang Li; Yu Li; Yunlong Liu; Ke Qi; Mingxiang Teng; Yadong Wang
Identification of regulatory regions of bidirectional genes in cervical cancer.

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All Publications

2013: Marcus R Breese; Yunlong Liu
NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets.
Bioinformatics (Oxford, England) 2013;29(4):494-6.
2013: Liran Juan; Susan E Clare; Milan Radovich; Bryan P Schneider; Guohua Wang; Yadong Wang; Yunlong Liu
Potential roles of microRNAs in regulating long intergenic noncoding RNAs.
BMC medical genomics 2013;6 Suppl 1():S7.
2013: Guohua Wang; Yuming Zhao; Liran Juan; Lang Li; Yu Li; Yunlong Liu; Ke Qi; Mingxiang Teng; Yadong Wang
Identification of regulatory regions of bidirectional genes in cervical cancer.
BMC medical genomics 2013;6 Suppl 1():S5.
2012: Mingxiang Teng; Yadong Wang; Matthew Mort; Leah R Padgett; David N Cooper; Michael J Econs; Howard J Edenberg; Tatiana Foroud; Shoji Ichikawa; Daniel L Koller; Yunlong Liu
regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions.
Bioinformatics (Oxford, England) 2012;28(14):1879-86.
2012: Ao Zhou; Todd C Skaar; Marcus R Breese; Howard J Edenberg; Yangyang Hao; Lang Li; Yunlong Liu
Alt Event Finder: a tool for extracting alternative splicing events from RNA-seq data.
BMC genomics 2012;13 Suppl 8():S10.
2012: Pengyue Zhang; Kun Huang; Tim Huang; Yunlong Liu; Raphaël Mourad; Kenneth Nephew; Yang Xiang; Lang Li
A dynamic time order network for time-series gene expression data analysis.
BMC systems biology 2012;6 Suppl 3():S9.
2012: Heng-Yi Wu; Pengyue Zheng; Tim H M Huang; Guanglong Jiang; Yunlong Liu; Kenneth P Nephew; Lang Li
A modulator based regulatory network for ERα signaling pathway.
BMC genomics 2012;13 Suppl 6():S6.
2012: Mingxiang Teng; Guohua Wang; Yadong Wang; Tim H M Huang; Seongho Kim; Lang Li; Yunlong Liu; Kenneth P Nephew; Changyu Shen; Curt Balch
Empirical bayes model comparisons for differential methylation analysis.
Comparative and functional genomics 2012;2012():376706.
2011: Yang Hu; Jeesun Jung; Yunlong Liu; A Keith Dunker; Yadong Wang
Changes in predicted protein disorder tendency may contribute to disease risk.
BMC genomics 2011;12 Suppl 5():S2.
2011: Xin Wang; Liran Juan; Junjie Lv; Jeremy R Sanford; Kejun Wang; Yunlong Liu
Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SRSF1.
BMC genomics 2011;12 Suppl 5():S8.
2011: Jeesun Jung; Jessica Dantzer; Yunlong Liu
Identification of multiple rare variants associated with a disease.
BMC proceedings 2011;5 Suppl 9():S103.
2011: Mingxiang Teng; Guohua Wang; Yadong Wang; Howard J Edenberg; Jeesun Jung; Jeremy R Sanford; Yunlong Liu
Prioritizing single-nucleotide variations that potentially regulate alternative splicing.
BMC proceedings 2011;5 Suppl 9():S40.
2011: APPAIAH N HITESH; Sunil Badve; Chirayu P Goswami; Yunlong Liu; Lida A Mina; George W Sledge; Harikrishna Nakshatri
Persistent upregulation of U6:SNORD44 small RNA ratio in the serum of breast cancer patients.
Breast cancer research : BCR 2011;13(5):R86.
2011: Changyu Shen; Todd C Skaar; Mingxiang Teng; Guohua Wang; Yadong Wang; Zhiping Wang; Pearlly Yan; Yuming Zhao; David A Flockhart; Hui-Ming (Tim) Huang; Yiwen Huang; Yunlong Liu; Kenneth P Nephew; Lang Li
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC systems biology 2011;5():67.
2011: Feng C Zhou; Qianqian Zhao; Yunlong Liu; Charles R Goodlett; Tiebing Liang; Jeanette McClintick; Howard J Edenberg; Lang Li
Alteration of gene expression by alcohol exposure at early neurulation.
BMC genomics 2011;12():124.
2010: Brittney-Shea Herbert; Rebecca A Chanoux; Yunlong Liu; Peter H Baenziger; Chirayu P Goswami; Jeanette N McClintick; Howard J Edenberg; Robert E Pennington; Steven M Lipkin; Levy Kopelovich
A molecular signature of normal breast epithelial and stromal cells from Li-Fraumeni syndrome mutation carriers.
Oncotarget 2010;1(6):405-22.
2010: Imranul Alam; Lucinda G Carr; Tiebing Liang; Yunlong Liu; Howard J Edenberg; Michael J Econs; Charles H Turner
Identification of genes influencing skeletal phenotypes in congenic P/NP rats.
Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research 2010;25(6):1314-25.
2010: Imranul Alam; Qiwei Sun; Daniel L Koller; Lixiang Liu; Yunlong Liu; Howard J Edenberg; Tatiana Foroud; Charles H Turner
Genes influencing spinal bone mineral density in inbred F344, LEW, COP, and DA rats.
Functional & integrative genomics 2010;10(1):63-72.
2010: Jaesik Jeong; Lang Li; Yunlong Liu; Kenneth P Nephew; Hui-Ming (Tim) Huang; Changyu Shen
An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer.
BMC medical genomics 2010;3():55.
2009: Yunlong Liu; Yokesh Balaraman; Guohua Wang; Kenneth P Nephew; Feng C Zhou
Alcohol exposure alters DNA methylation profiles in mouse embryos at early neurulation.
Epigenetics : official journal of the DNA Methylation Society 2009;4(7):500-11.
2009: Imranul Alam; Qiwei Sun; Daniel L Koller; Lixiang Liu; Yunlong Liu; Howard J Edenberg; Jiliang Li; Tatiana Foroud; Charles H Turner
Differentially expressed genes strongly correlated with femur strength in rats.
Genomics 2009;94(4):257-62.
2008: Imranul Alam; Qiwei Sun; Lixiang Liu; Daniel L Koller; Yunlong Liu; Howard J Edenberg; Michael J Econs; Tatiana Foroud; Charles H Turner
Genomic expression analysis of rat chromosome 4 for skeletal traits at femoral neck.
Physiological genomics 2008;35(2):191-6.
2008: Kazunori Hamamura; Yunlong Liu; Hiroki Yokota
Microarray analysis of thapsigargin-induced stress to the endoplasmic reticulum of mouse osteoblasts.
Journal of bone and mineral metabolism 2008;26(3):231-40.
2007: Andy B Chen; Kazunori Hamamura; Guohua Wang; Weirong Xing; Subburaman Mohan; Hiroki Yokota; Yunlong Liu
Model-based comparative prediction of transcription-factor binding motifs in anabolic responses in bone.
Genomics, proteomics & bioinformatics 2007;5(3-4):158-65.
2006: Min Su; Hui Jiang; Ping Zhang; Yunlong Liu; Exing Wang; Andrew Hsu; Hiroki Yokota
Knee-loading modality drives molecular transport in mouse femur.
Annals of biomedical engineering 2006;34(10):1600-6.
2006: Yunlong Liu; Hiroki Yokota
Artificial ants deposit pheromone to search for regulatory DNA elements.
BMC genomics 2006;7():221.
2005: Yunlong Liu; Matthew P Vincenti; Hiroki Yokota
Principal component analysis for predicting transcription-factor binding motifs from array-derived data.
BMC bioinformatics 2005;6():276.
2003: Hui Bin Sun; Yunlong Liu; Lei Qian; Hiroki Yokota
Model-based analysis of matrix metalloproteinase expression under mechanical shear.
Annals of biomedical engineering 2003;31(2):171-80.