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Jarrod Marto

Research Profile

Occupations

Proteomics

Concepts & Ideas

Procedures

Genes & Molecular Sequences

Amino Acid Sequences

Phenomena

Chemicals & Drugs

Living Beings

Mouse

Anatomy

Co-author Network

Publications

TOP 3
James T Webber; Manor Askenazi; Scott B Ficarro; Max A Iglehart; Jarrod A Marto
Library dependent LC-MS/MS acquisition via mzAPI/Live.
Daqi Tu; Shenghong Yang; Cai-hong Yun; Alicia Y Zhou; Zehua Zhu; David A Barbie; Edmond Chan; Gavin P Dunn; Scott B Ficarro; William C Hahn; Hyesung Jeon; Kyung-Eun Lee; Yiqun Li; Jarrod A Marto; Tran Thai; Angela V Toms; Michael J Eck
Structure and ubiquitination-dependent activation of TANK-binding kinase 1.
Qingqing Wang; G Adelmant; Jarrod A Marto; Michael J Moore; Pamela A Silver
PQBP1, a factor linked to intellectual disability, affects alternative splicing associated with neurite outgrowth.

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All Publications

2013: James T Webber; Manor Askenazi; Scott B Ficarro; Max A Iglehart; Jarrod A Marto
Library dependent LC-MS/MS acquisition via mzAPI/Live.
Proteomics 2013;13(9):1412-6.
2013: Daqi Tu; Shenghong Yang; Cai-hong Yun; Alicia Y Zhou; Zehua Zhu; David A Barbie; Edmond Chan; Gavin P Dunn; Scott B Ficarro; William C Hahn; Hyesung Jeon; Kyung-Eun Lee; Yiqun Li; Jarrod A Marto; Tran Thai; Angela V Toms; Michael J Eck
Structure and ubiquitination-dependent activation of TANK-binding kinase 1.
Cell reports 2013;3(3):747-58.
2013: Qingqing Wang; G Adelmant; Jarrod A Marto; Michael J Moore; Pamela A Silver
PQBP1, a factor linked to intellectual disability, affects alternative splicing associated with neurite outgrowth.
Genes & development 2013;27(6):615-26.
2013: Melissa Duarte; David E Hill; G Adelmant; Michael A Calderwood; Hongyu Deng; Jarrod A Marto; Makoto Ohashi; Jennifer Roecklein-Canfield; Lili Wang; Eric Johannsen
An RS motif within the Epstein-Barr virus BLRF2 tegument protein is phosphorylated by SRPK2 and is important for viral replication.
PloS one 2013;8(1):e53512.
2012: Pilar Caro; Bjoern Chapuy; Linfeng Chen; Scott B Ficarro; John Gounarides; Michael Green; Amar U Kishan; Jarrod A Marto; Stefano Monti; Erik Norberg; Klaudia Polak; Margaret A Shipp; Illana A Stanley; Daniel Tondera; Hong Yin; Feng Zhou; Nika N Danial
Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma.
Cancer cell 2012;22(4):547-60.
2012: Timothy W Sikorski; Manor Askenazi; Stephen Buratowski; Scott B Ficarro; Yoo Jin Joo; Jarrod A Marto
Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters.
The Journal of biological chemistry 2012;287(42):35397-408.
2012: G Adelmant; Manor Askenazi; Anne S Calkins; Joseph D Card; Brijesh K Garg; J Dirk Iglehart; Jarrod A Marto; Alex Miron; Yoshihiro Nakatani; Pamela A Silver; Bijan Sobhian; Yi Zhang; Jean-Bernard Lazaro
DNA ends alter the molecular composition and localization of Ku multicomponent complexes.
Molecular & cellular proteomics : MCP 2012;11(8):411-21.
2012: Feng Zhou; James T Webber; Scott B Ficarro; Yu Lu; Jarrod A Marto
Nanoflow low pressure high peak capacity single dimension LC-MS/MS platform for high-throughput, in-depth analysis of mammalian proteomes.
Analytical chemistry 2012;84(11):5133-9.
2012: Rositsa I Koleva; C John Luckey; Guido Marcucci; John A Alberta; Marlene J Carrasco-Alfonso; Scott B Ficarro; Hanna S Radomska; Daniel G Tenen; James T Webber; Jarrod A Marto
C/EBPα and DEK coordinately regulate myeloid differentiation.
Blood 2012;119(21):4878-88.
2012: Dong-Hyun Lee; Jarrod A Marto; Yunfeng Pan; Guillaume O Adelmant; Aaron A Goodarzi; Penelope A Jeggo; Dipanjan Chowdhury
Phosphoproteomic analysis reveals that PP4 dephosphorylates KAP-1 impacting the DNA damage response.
The EMBO journal 2012;31(10):2403-15.
2012: Job D Cardoza; Scott B Ficarro; Jignesh R Parikh; Jarrod A Marto
Mass spectrometry-based proteomics: qualitative identification to activity-based protein profiling.
Wiley interdisciplinary reviews. Systems biology and medicine 2012;4(2):141-62.
2012: Tinghu Zhang; Dario R Alessi; Scott B Ficarro; Francisco Inesta-Vaquera; NamDoo Kim; John D Laughlin; Philip V LoGrasso; Thomas Machleidt; Jarrod A Marto; Mario Niepel; Tyzoon K Nomanbhoy; HaJeung Park; Matthew P Patricelli; Taebo Sim; Peter K Sorger; Ting Xie; Jianming Zhang; Nathanael S Gray
Discovery of potent and selective covalent inhibitors of JNK.
Chemistry & biology 2012;19(1):140-54.
2012: Debrah A Fine; Laurence Florens; Luxuan Guo; David E Hill; Robert L James; Anna Korkhin; Larisa Litovchick; Jarrod A Marto; Megha Padi; Orit Rozenblatt-Rosen; Soundarapandian Velmurgan; Marc Vidal; Michael P Washburn; Rosa Yoon; Ying Zhang; G Adelmant; Christian Berrios; Michael A Calderwood; Jingwei Cheng; Michael E Cusick; James A DeCaprio
Identification of FAM111A as an SV40 host range restriction and adenovirus helper factor.
PLoS pathogens 2012;8(10):e1002949.
2012: Jignesh R Parikh; Yu Xia; Jarrod A Marto
Multi-edge gene set networks reveal novel insights into global relationships between biological themes.
PloS one 2012;7(9):e45211.
2011: Mikhail M Savitski; Gavain Sweetman; Nico Zinn; Manor Askenazi; Manja Lang; Jarrod A Marto; Marcus Bantscheff
Delayed fragmentation and optimized isolation width settings for improvement of protein identification and accuracy of isobaric mass tag quantification on Orbitrap-type mass spectrometers.
Analytical chemistry 2011;83(23):8959-67.
2011: Timothy W Sikorski; Scott B Ficarro; John Holik; Taesoo Kim; Jarrod A Marto; Oliver J Rando; Stephen Buratowski
Sub1 and RPA associate with RNA polymerase II at different stages of transcription.
Molecular cell 2011;44(3):397-409.
2011: C John Luckey; Yu Lu; Jarrod A Marto
Understanding the first steps in embryonic stem cell exit from the pluripotent state.
Transfusion 2011;51 Suppl 4():118S-124S.
2011: Scott B Ficarro; Brijesh Garg; C John Luckey; G Adelmant; Marlene J Carrasco-Alfonso; James T Webber; Yi Zhang; Jarrod A Marto
Online nanoflow multidimensional fractionation for high efficiency phosphopeptide analysis.
Molecular & cellular proteomics : MCP 2011;10(11):O111.011064.
2011: Shailja Pathania; Ralph Scully; Jarrod A Marto; Jenna Nguyen; Guillaume O Adelmant; Jean Feunteun; Sarah J Hill; David M Livingston
BRCA1 is required for postreplication repair after UV-induced DNA damage.
Molecular cell 2011;44(2):235-51.
2011: Junko Odajima; Isabel M Quadros; Miho Terunuma; Zachary P Wills; Qunyan Yu; Frederic Bienvenu; Manjusri Das; Tarek Z Deeb; Sylwia Gawrzak; Yan Geng; Michael E Greenberg; Marie E Jecrois; Karla Kretschmannova; Na Li; Jarrod A Marto; Stephen J Moss; Yasmine M Ndassa; Jennifer Newman; Piotr Sicinski
Cyclin E constrains Cdk5 activity to regulate synaptic plasticity and memory formation.
Developmental cell 2011;21(4):655-68.
2011: Feng Zhou; Scott B Ficarro; Timothy W Sikorski; James T Webber; Jarrod A Marto
Online nanoflow reversed phase-strong anion exchange-reversed phase liquid chromatography-tandem mass spectrometry platform for efficient and in-depth proteome sequence analysis of complex organisms.
Analytical chemistry 2011;83(18):6996-7005.
2011: Peggy P Hsu; Seong A Kang; Daniel Lim; Jarrod A Marto; Kathleen A Ottina; Timothy R Peterson; Jonathan Rameseder; Yongmun Choi; Nathanael S Gray; Michael B Yaffe; Yi Zhang; David M Sabatini
The mTOR-regulated phosphoproteome reveals a mechanism of mTORC1-mediated inhibition of growth factor signaling.
Science (New York, N.Y.) 2011;332(6035):1317-22.
2011: Manor Askenazi; James T Webber; Jarrod A Marto
mzServer: web-based programmatic access for mass spectrometry data analysis.
Molecular & cellular proteomics : MCP 2011;10(5):M110.003988.
2011: James T Webber; Manor Askenazi; Jarrod A Marto
mzResults: an interactive viewer for interrogation and distribution of proteomics results.
Molecular & cellular proteomics : MCP 2011;10(5):M110.003970.
2011: Nikki Traylor-Knowles; Yu Xia; Sara Garamszegi; Brian R Granger; Les Kaufman; Tristan J Lubinski; Jarrod A Marto; Jignesh R Parikh; John R Finnerty
Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis.
BMC genomics 2011;12():585.
2011: Daqi Tu; Yiqun Li; Hyun Kyu Song; Angela V Toms; Christopher J Gould; Scott B Ficarro; Jarrod A Marto; Bruce L Goode; Michael J Eck
Crystal structure of a coiled-coil domain from human ROCK I.
PloS one 2011;6(3):e18080.
2011: Andrea Meixner; Karsten Boldt; Marleen Van Troys; Manor Askenazi; Christian Johannes Gloeckner; Matthias Bauer; Jarrod A Marto; Christophe Ampe; Norbert Kinkl; Marius Ueffing
A QUICK screen for Lrrk2 interaction partners--leucine-rich repeat kinase 2 is involved in actin cytoskeleton dynamics.
Molecular & cellular proteomics : MCP 2011;10(1):M110.001172.
2010: Feng Zhou; Job D Cardoza; Scott B Ficarro; Guillaume O Adelmant; Jean-Bernard Lazaro; Jarrod A Marto
Online nanoflow RP-RP-MS reveals dynamics of multicomponent Ku complex in response to DNA damage.
Journal of proteome research 2010;9(12):6242-55.
2010: Manor Askenazi; Jarrod A Marto; Michal Linial
The complete peptide dictionary--a meta-proteomics resource.
Proteomics 2010;10(23):4306-10.
2010: Zhao Chen; Takaaki Sasaki; Xiaohong Tan; Julian Carretero; Takeshi Shimamura; Danan Li; Chunxiao Xu; Yuchuan Wang; Guillaume O Adelmant; Marzia Capelletti; Hyun Joo Lee; Scott J Rodig; Christa Borgman; Seung-Il Park; Hyeong Ryul Kim; Robert F Padera; Jarrod A Marto; Nathanael S Gray; Andrew L Kung; Geoffrey I Shapiro; Pasi A Janne; Kwok-Kin Wong
Inhibition of ALK, PI3K/MEK, and HSP90 in murine lung adenocarcinoma induced by EML4-ALK fusion oncogene.
Cancer research 2010;70(23):9827-36.
2010: Maria Simarro; Alfredo Gimenez-Cassina; Nancy Kedersha; Jean-Bernard Lazaro; Guillaume O Adelmant; Jarrod A Marto; Kirsten Rhee; Sarah Tisdale; Nika Danial; Charaf Benarafa; Anonio Orduña; Paul Anderson
Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration.
Biochemical and biophysical research communications 2010;401(3):440-6.
2010: Jignesh R Parikh; Bertram Klinger; Yu Xia; Jarrod A Marto; Nils Blüthgen
Discovering causal signaling pathways through gene-expression patterns.
Nucleic acids research 2010;38(Web Server issue):W109-17.
2010: Lawrence S Argetsinger; Jeanne A Stuckey; Scott A Robertson; Rositsa I Koleva; Joel M Cline; Jarrod A Marto; Martin G Myers Jr; Christin Carter-Su
Tyrosines 868, 966, and 972 in the kinase domain of JAK2 are autophosphorylated and required for maximal JAK2 kinase activity.
Molecular endocrinology (Baltimore, Md.) 2010;24(5):1062-76.
2010: Manor Askenazi; Shaojuan Li; Saurav Singh; Jarrod A Marto
Pathway Palette: a rich internet application for peptide-, protein- and network-oriented analysis of MS data.
Proteomics 2010;10(9):1880-5.
2010: Yi Zhang; Manor Askenazi; Jingrui Jiang; C John Luckey; James D Griffin; Jarrod A Marto
A robust error model for iTRAQ quantification reveals divergent signaling between oncogenic FLT3 mutants in acute myeloid leukemia.
Molecular & cellular proteomics : MCP 2010;9(5):780-90.
2010: K Levanon; V Ng; H Y Piao; Yi Zhang; M C Chang; Michael H Roh; D W Kindelberger; M S Hirsch; C P Crum; Jarrod A Marto; R Drapkin
Primary ex vivo cultures of human fallopian tube epithelium as a model for serous ovarian carcinogenesis.
Oncogene 2010;29(8):1103-13.
2009: Yi Zhang; Scott B Ficarro; Shaojuan Li; Jarrod A Marto
Optimized Orbitrap HCD for quantitative analysis of phosphopeptides.
Journal of the American Society for Mass Spectrometry 2009;20(8):1425-34.
2009: Scott B Ficarro; Guillaume Adelmant; Maria N Tomar; Yi Zhang; Vincent J Cheng; Jarrod A Marto
Magnetic bead processor for rapid evaluation and optimization of parameters for phosphopeptide enrichment.
Analytical chemistry 2009;81(11):4566-75.
2009: Scott A Robertson; Rositsa I Koleva; Lawrence S Argetsinger; Christin Carter-Su; Jarrod A Marto; Edward P Feener; Martin G Myers Jr
Regulation of Jak2 function by phosphorylation of Tyr317 and Tyr637 during cytokine signaling.
Molecular and cellular biology 2009;29(12):3367-78.
2009: Scott B Ficarro; Yi Zhang; Yu Lu; Ahmadali R Moghimi; Manor Askenazi; Elzbieta Hyatt; Eric D Smith; Leah Boyer; Thorsten M Schlaeger; C John Luckey; Jarrod A Marto
Improved electrospray ionization efficiency compensates for diminished chromatographic resolution and enables proteomics analysis of tyrosine signaling in embryonic stem cells.
Analytical chemistry 2009;81(9):3440-7.
2009: Manor Askenazi; Jignesh R Parikh; Jarrod A Marto
mzAPI: a new strategy for efficiently sharing mass spectrometry data.
Nature methods 2009;6(4):240-1.
2009: Guillaume Adelmant; Jarrod A Marto
Protein complexes: the forest and the trees.
Expert review of proteomics 2009;6(1):5-10.
2009: Jignesh R Parikh; Manor Askenazi; Scott B Ficarro; Tanya Cashorali; James T Webber; Nathaniel C Blank; Yi Zhang; Jarrod A Marto
multiplierz: an extensible API based desktop environment for proteomics data analysis.
BMC bioinformatics 2009;10():364.
2009: Sofia Hamirally; Jeremy P Kamil; Yasmine M Ndassa-Colday; Alison J Lin; Wan Jin Jahng; Moon-Chang Baek; Sarah Noton; Laurie A Silva; Martha Simpson-Holley; David M Knipe; David E Golan; Jarrod A Marto; Donald M Coen
Viral mimicry of Cdc2/cyclin-dependent kinase 1 mediates disruption of nuclear lamina during human cytomegalovirus nuclear egress.
PLoS pathogens 2009;5(1):e1000275.
2008: Doug Phanstiel; Yi Zhang; Jarrod A Marto; Joshua J Coon
Peptide and protein quantification using iTRAQ with electron transfer dissociation.
Journal of the American Society for Mass Spectrometry 2008;19(9):1255-62.
2008: Scott B Ficarro; Jignesh R Parikh; Nathaniel C Blank; Jarrod A Marto
Niobium(V) oxide (Nb2O5): application to phosphoproteomics.
Analytical chemistry 2008;80(12):4606-13.
2006: Yasmine M Ndassa; Chris Orsi; Jarrod A Marto; She Chen; Mark M Ross
Improved immobilized metal affinity chromatography for large-scale phosphoproteomics applications.
Journal of proteome research 2006;5(10):2789-99.
2006: Rositsa I Koleva; Barbara A Conley; Diana Romero; Kristin S Riley; Jarrod A Marto; Andreas Lux; Calvin P H Vary
Endoglin structure and function: Determinants of endoglin phosphorylation by transforming growth factor-beta receptors.
The Journal of biological chemistry 2006;281(35):25110-23.
2004: John E P Syka; Jarrod A Marto; Dina L Bai; Stevan Horning; Michael W Senko; Jae C Schwartz; Beatrix Ueberheide; Benjamin Garcia; Scott Busby; Tara Muratore; Jeffrey Shabanowitz; Donald F Hunt
Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications.
Journal of proteome research 2004;3(3):621-6.
2003: Angela L Zarling; Chance John Luckey; Jarrod A Marto; Forest M White; Cynthia J Brame; Anne M Evans; Paul J Lehner; Peter Cresswell; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Tapasin is a facilitator, not an editor, of class I MHC peptide binding.
Journal of immunology (Baltimore, Md. : 1950) 2003;171(10):5287-95.
2003: Danyelle M Townsend; Jarrod A Marto; Mei Deng; Timothy J Macdonald; Marie H Hanigan
High pressure liquid chromatography and mass spectrometry characterization of the nephrotoxic biotransformation products of Cisplatin.
Drug metabolism and disposition: the biological fate of chemicals 2003;31(6):705-13.
2003: Scott B Ficarro; Olga Chertihin; V Anne Westbrook; Forest White; Friederike L Jayes; Petr Kalab; Jarrod A Marto; Jeffrey Shabanowitz; John C Herr; Donald F Hunt; Pablo E Visconti
Phosphoproteome analysis of capacitated human sperm. Evidence of tyrosine phosphorylation of a kinase-anchoring protein 3 and valosin-containing protein/p97 during capacitation.
The Journal of biological chemistry 2003;278(13):11579-89.
2002: John D Lippolis; Forest M White; Jarrod A Marto; Chance John Luckey; Timothy N J Bullock; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Analysis of MHC class II antigen processing by quantitation of peptides that constitute nested sets.
Journal of immunology (Baltimore, Md. : 1950) 2002;169(9):5089-97.
2002: David C Flyer; Venkatesh Ramakrishna; Cara Miller; Helen Myers; Melanie McDaniel; Karen E Root; Caroline Flournoy; Victor H Engelhard; David H Canaday; Jarrod A Marto; Mark M Ross; Donald F Hunt; Jeffrey Shabanowitz; Forest M White
Identification by mass spectrometry of CD8(+)-T-cell Mycobacterium tuberculosis epitopes within the Rv0341 gene product.
Infection and immunity 2002;70(6):2926-32.
2001: H Kao; Jarrod A Marto; Thomas K Hoffmann; Jeffrey Shabanowitz; Sydney D Finkelstein; Theresa L Whiteside; Donald F Hunt; Olivera J Finn
Identification of cyclin B1 as a shared human epithelial tumor-associated antigen recognized by T cells.
The Journal of experimental medicine 2001;194(9):1313-23.
2001: Chance John Luckey; Jarrod A Marto; M Partridge; E Hall; Forest M White; John D Lippolis; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors.
Journal of immunology (Baltimore, Md. : 1950) 2001;167(3):1212-21.
2001: Gerald Nepom; John D Lippolis; Forest M White; Susan A Masewicz; Jarrod A Marto; A Herman; Chance John Luckey; B Falk; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard; BS Nepom
Identification and modulation of a naturally processed T cell epitope from the diabetes-associated autoantigen human glutamic acid decarboxylase 65 (hGAD65).
Proceedings of the National Academy of Sciences of the United States of America 2001;98(4):1763-8.
2000: S E Martin; Jeffrey Shabanowitz; Donald F Hunt; Jarrod A Marto
Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 2000;72(18):4266-74.
2000: V L Crotzer; Robert E Christian; Jill M Brooks; Jeffrey Shabanowitz; Robert E Settlage; Jarrod A Marto; Forest M White; Alan B Rickinson; Donald F Hunt; Victor H Engelhard
Immunodominance among EBV-derived epitopes restricted by HLA-B27 does not correlate with epitope abundance in EBV-transformed B-lymphoblastoid cell lines.
Journal of immunology (Baltimore, Md. : 1950) 2000;164(12):6120-9.
2000: S Celli; Jarrod A Marto; R Falchetto; J Shabanowitz; Luis A Valdivia; John J Fung; D F Hunt; RH Kelly
Serum protein immunogenicity: implications for liver xenografting.
Electrophoresis 2000;21(5):965-75.
1999: Richard A Pierce; E D Field; Joke M M den Haan; Jennifer A Caldwell; Forest M White; Jarrod A Marto; W Wang; L M Frost; Els Blokland; C Reinhardus; Jeffrey Shabanowitz; Donald F Hunt; Els Goulmy; Victor H Engelhard
Cutting edge: the HLA-A*0101-restricted HY minor histocompatibility antigen originates from DFFRY and contains a cysteinylated cysteine residue as identified by a novel mass spectrometric technique.
Journal of immunology (Baltimore, Md. : 1950) 1999;163(12):6360-4.
1998: Chance John Luckey; G M King; Jarrod A Marto; S Venketeswaran; B F Maier; V L Crotzer; Teresa A Colella; Jeffrey Shabanowitz; Donald F Hunt; Victor H Engelhard
Proteasomes can either generate or destroy MHC class I epitopes: evidence for nonproteasomal epitope generation in the cytosol.
Journal of immunology (Baltimore, Md. : 1950) 1998;161(1):112-21.
1996: F M White; Jarrod A Marto; Alan G Marshall
An external source 7 T Fourier transform ion cyclotron resonance mass spectrometer with electrostatic ion guide.
Rapid communications in mass spectrometry : RCM 1996;10(14):1845-9.
1996: M W Senko; Christopher L Hendrickson; L Pasa-Tolić; Jarrod A Marto; F M White; S Guan; Alan G Marshall
Electrospray ionization Fourier transform ion cyclotron resonance at 9.4 T.
Rapid communications in mass spectrometry : RCM 1996;10(14):1824-8.
1995: T Solouki; Jarrod A Marto; F M White; S Guan; Alan G Marshall
Attomole biomolecule mass analysis by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance.
Analytical chemistry 1995;67(22):4139-44.
1995: Jarrod A Marto; F M White; S Seldomridge; Alan G Marshall
Structural characterization of phospholipids by matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry.
Analytical chemistry 1995;67(21):3979-84.
1994: Jarrod A Marto; S Guan; Alan G Marshall
Wide-mass-range axialization for high-resolution Fourier-transform ion cyclotron resonance mass spectrometry of externally generated ions.
Rapid communications in mass spectrometry : RCM 1994;8(8):615-20.