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Vladimir Brusic

Research Profile

Occupations

Chemicals & Drugs

Genes & Molecular Sequences

Amino Acid Sequences

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Phenomena

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TOP 3
Yongqun He; Vladimir Brusic; Zhiwei Cao; Anne S De Groot; Christian Schönbach; Nikolai Petrovsky
Computational vaccinology and the ICoVax 2012 workshop.
Ann Cai; David S DeLuca; Naa Norkor Hammond; Derin B Keskin; Valentina Nardi; Donna Neuberg; John Sidney; Richard M Stone; Anselmo Alonso; Vladimir Brusic; Guang Lan Zhang; Wandi Zhang; Catherine J Wu
Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients.
KEUN JUNG; Asif M Khan; Francois Lemonnier; Ernesto Marques; Olivo Miotto; Eduardo J M Nascimento; Jerome Salmon; Gregory G Simon; Benjamin Yong Liang Tan; Tin Wee Tan; Vladimir Brusic; Rafael Dhalia; Yongli Hu; Thomas J August
West Nile virus T-cell ligand sequences shared with other flaviviruses: a multitude of variant sequences as potential altered peptide ligands.

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2013: Yongqun He; Vladimir Brusic; Zhiwei Cao; Anne S De Groot; Christian Schönbach; Nikolai Petrovsky
Computational vaccinology and the ICoVax 2012 workshop.
BMC bioinformatics 2013;14 Suppl 4():I1.
2012: Ann Cai; David S DeLuca; Naa Norkor Hammond; Derin B Keskin; Valentina Nardi; Donna Neuberg; John Sidney; Richard M Stone; Anselmo Alonso; Vladimir Brusic; Guang Lan Zhang; Wandi Zhang; Catherine J Wu
Mutated BCR-ABL generates immunogenic T-cell epitopes in CML patients.
Clinical cancer research : an official journal of the American Association for Cancer Research 2012;18(20):5761-72.
2012: KEUN JUNG; Asif M Khan; Francois Lemonnier; Ernesto Marques; Olivo Miotto; Eduardo J M Nascimento; Jerome Salmon; Gregory G Simon; Benjamin Yong Liang Tan; Tin Wee Tan; Vladimir Brusic; Rafael Dhalia; Yongli Hu; Thomas J August
West Nile virus T-cell ligand sequences shared with other flaviviruses: a multitude of variant sequences as potential altered peptide ligands.
Journal of virology 2012;86(14):7616-24.
2012: Melinda A Biernacki; Vladimir Brusic; Nikhil Munshi; Donna Neuberg; Rao Prabhala; Jerome Ritz; Robert J Soiffer; Yu-tzu Tai; Anselmo Alonso; Edwin P Alyea; Kenneth C Anderson; Guang Lan Zhang; Li Zhang; Wandi Zhang; Catherine J Wu
Novel myeloma-associated antigens revealed in the context of syngeneic hematopoietic stem cell transplantation.
Blood 2012;119(13):3142-50.
2012: Davide Alemani; Santo Motta; Francesco Pappalardo; Marzio Pennisi; Vladimir Brusic
Combining cellular automata and Lattice Boltzmann method to model multiscale avascular tumor growth coupled with nutrient diffusion and immune competition.
Journal of immunological methods 2012;376(1-2):55-68.
2012: Francesco Pappalardo; Vladimir Brusic; Holger Fröhlich
Immune system modeling and related pathologies.
Computational and mathematical methods in medicine 2012;2012():274702.
2012: Christian Schönbach; Tin Wee Tan; Sissades Tongsima; Vladimir Brusic; Jonathan Chan; Shoba Ranganathan
InCoB2012 Conference: from biological data to knowledge to technological breakthroughs.
BMC bioinformatics 2012;13 Suppl 17():S1.
2012: Simon M Lank; Ellis L Reinherz; Roger W Wiseman; Vladimir Brusic; Hannah M Creager; Brittney A Golbach; Derin B Keskin; David O'Connor
Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing.
BMC genomics 2012;13():378.
2011: David S DeLuca; Derin B Keskin; Ellis L Reinherz; Guang Lan Zhang; Vladimir Brusic
PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments.
BMC bioinformatics 2011;12 Suppl 13():S6.
2011: Guang Lan Zhang; Shanfeng Zhu; Hifzur Rahman Ansari; Phil Bradley; Gavin C Cawley; James E Crowe; Włodzisław Duch; Tomer Hertz; Xihao Hu; Nebojsa Jojic; Yohan Kim; Oliver Kohlbacher; Ole Lund; Claus Lundegaard; Craig A Magaret; Morten Nielsen; Christos Panayiotou; Harris Papadopoulos; Marios M Polycarpou; Gajendra PS Raghava; Michael T Rock; Vider-Shalit Tal; Li C Xue; Chen Yanover; Vladimir Brusic
Machine learning competition in immunology - Prediction of HLA class I binding peptides.
Journal of immunological methods 2011;374(1-2):1-4.
2011: Guang Lan Zhang; Derin B Keskin; Hong Huang Lin; Ellis L Reinherz; Vladimir Brusic
Dana-Farber repository for machine learning in immunology.
Journal of immunological methods 2011;374(1-2):18-25.
2011: Guang Lan Zhang; Tanya Zlateva; Lou Chitkushev; David S DeLuca; Derin B Keskin; Ole Lund; Ellis L Reinherz; Vladimir Brusic
MULTIPRED2: a computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles.
Journal of immunological methods 2011;374(1-2):53-61.
2011: Yi chi M Kong; Daniel J McCormick; Gerald P Morris; Nicholas K Brown; Vladimir Brusic; Jeffrey C Flynn; Chella S David
Efficacy of HLA-DRB1∗03:01 and H2E transgenic mouse strains to correlate pathogenic thyroglobulin epitopes for autoimmune thyroiditis.
Journal of autoimmunity 2011;37(2):63-70.
2011: Daniel F Hoft; Vladimir Brusic; Isaac G Sakala
Optimizing vaccine development.
Cellular microbiology 2011;13(7):934-42.
2011: Karen S Anderson; Wanyong Zeng; Tetsuro Sasada; Jaewon Choi; Angelika B Riemer; Mei Su; Donna Drakoulakos; Yoon-Joong Kang; Vladimir Brusic; Catherine Wu; Ellis L Reinherz
Impaired tumor antigen processing by immunoproteasome-expressing CD40-activated B cells and dendritic cells.
Cancer immunology, immunotherapy : CII 2011;60(6):857-67.
2011: Melisa L Budde; Jennifer J Lhost; Benjamin J Burwitz; Ericka A Becker; Charles M Burns; Shelby L O'Connor; Julie A Karl; Roger W Wiseman; Benjamin N Bimber; Guang Lan Zhang; William H Hildebrand; Vladimir Brusic; David O'Connor
Transcriptionally abundant major histocompatibility complex class I alleles are fundamental to nonhuman primate simian immunodeficiency virus-specific CD8+ T cell responses.
Journal of virology 2011;85(7):3250-61.
2011: Derin B Keskin; Seung Jo Kim; Simon Lank; Sun Young Lee; David H O'Connor; Ross S Berkowitz; Vladimir Brusic; Bruce Reinhold; Guanglan Zhang; Ellis L Reinherz
Direct identification of an HPV-16 tumor antigen from cervical cancer biopsy specimens.
Frontiers in immunology 2011;2():75.
2011: Lars Rønn Olsen; Ellis L Reinherz; Guang Lan Zhang; Derin B Keskin; Vladimir Brusic
Conservation analysis of dengue virus T-cell epitope-based vaccine candidates using Peptide block entropy.
Frontiers in immunology 2011;2():69.
2011: Lars R Olsen; Ellis L Reinherz; Guang Lan Zhang; Vladimir Brusic
FLAVIdB: A data mining system for knowledge discovery in flaviviruses with direct applications in immunology and vaccinology.
Immunome research 2011;7(3):1-9.
2011: Guang Lan Zhang; David S DeLuca; Vladimir Brusic
Database resources for proteomics-based analysis of cancer.
Methods in molecular biology (Clifton, N.J.) 2011;723():349-64.
2011: David S DeLuca; Ovidiu Marina; Surajit Ray; Guang Lan Zhang; Catherine J Wu; Vladimir Brusic
Data processing and analysis for protein microarrays.
Methods in molecular biology (Clifton, N.J.) 2011;723():337-47.
2010: Liwen You; Vladimir Brusic; Marcus Gallagher; Mikael Bodén
Using Gaussian process with test rejection to detect T-cell epitopes in pathogen genomes.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2010;7(4):741-51.
2010: Angelika B Riemer; Derin B Keskin; Guanglan Zhang; Maris Handley; Karen S Anderson; Vladimir Brusic; Bruce Reinhold; Ellis L Reinherz
A conserved E7-derived cytotoxic T lymphocyte epitope expressed on human papillomavirus 16-transformed HLA-A2+ epithelial cancers.
The Journal of biological chemistry 2010;285(38):29608-22.
2010: Mark D Halling-Brown; Francesco Pappalardo; Nicolas Rapin; Ping Zhang; Davide Alemani; Andrew Emerson; Filippo Castiglione; Patrice Duroux; Marzio Pennisi; Olivo Miotto; Daniel Churchill; Elda Rossi; David S Moss; Clare E Sansom; Massimo Bernaschi; Marie-Paule Lefranc; Søren Brunak; Ole Lund; Santo Motta; Pier-Luigi Lollini; Annalisa Murgo; Arianna Palladini; Kaye E Basford; Vladimir Brusic; Adrian J Shepherd
ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale.
Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 2010;368(1920):2799-815.
2010: Wandi Zhang; Jaewon Choi; Wanyong Zeng; Shelby A Rogers; Edwin P Alyea; James G Rheinwald; Christine M Canning; Vladimir Brusic; Tetsuro Sasada; Ellis L Reinherz; Jerome Ritz; Robert J Soiffer; Catherine J Wu
Graft-versus-leukemia antigen CML66 elicits coordinated B-cell and T-cell immunity after donor lymphocyte infusion.
Clinical cancer research : an official journal of the American Association for Cancer Research 2010;16(10):2729-39.
2010: Yishai Ofran; Haesook T Kim; Vladimir Brusic; Loren Blake; Michael Mandrell; Catherine J Wu; Stefanie Sarantopoulos; Roberto Bellucci; Derin B Keskin; Robert J Soiffer; Joseph H Antin; Jerome Ritz
Diverse patterns of T-cell response against multiple newly identified human Y chromosome-encoded minor histocompatibility epitopes.
Clinical cancer research : an official journal of the American Association for Cancer Research 2010;16(5):1642-51.
2010: Ovidiu Marina; Ursula Hainz; Melinda A Biernacki; Wandi Zhang; Ann Cai; Jonathan S Duke-Cohan; Fenglong Liu; Vladimir Brusic; Donna Neuberg; Jeffery L Kutok; Edwin P Alyea; Christine M Canning; Robert J Soiffer; Jerome Ritz; Catherine J Wu
Serologic markers of effective tumor immunity against chronic lymphocytic leukemia include nonmutated B-cell antigens.
Cancer research 2010;70(4):1344-55.
2010: Melinda A Biernacki; Ovidiu Marina; Wandi Zhang; Fenglong Liu; Ingmar Bruns; Ann Cai; Donna Neuberg; Christine M Canning; Edwin P Alyea; Robert J Soiffer; Vladimir Brusic; Jerome Ritz; Catherine J Wu
Efficacious immune therapy in chronic myelogenous leukemia (CML) recognizes antigens that are expressed on CML progenitor cells.
Cancer research 2010;70(3):906-15.
2010: Olivo Miotto; A T Heiny; Randy Albrecht; Adolfo García-Sastre; Tin Wee Tan; Thomas J August; Vladimir Brusic
Complete-proteome mapping of human influenza A adaptive mutations: implications for human transmissibility of zoonotic strains.
PloS one 2010;5(2):e9025.
2009: Mark Halling-Brown; Raheel Shaban; Dan Frampton; Clare E Sansom; Matthew Davies; Darren R Flower; Melanie Duffield; Richard W Titball; Vladimir Brusic; David S Moss
Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design.
Molecular immunology 2009;46(13):2699-705.
2009: Francesco Pappalardo; Mark D Halling-Brown; Nicolas Rapin; Ping Zhang; Davide Alemani; Andrew Emerson; Paola Paci; Patrice Duroux; Marzio Pennisi; Arianna Palladini; Olivo Miotto; Daniel Churchill; Elda Rossi; Adrian J Shepherd; David S Moss; Filippo Castiglione; Massimo Bernaschi; Marie-Paule Lefranc; Søren Brunak; Santo Motta; Pier-Luigi Lollini; Kaye E Basford; Vladimir Brusic
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization.
Briefings in bioinformatics 2009;10(3):330-40.
2009: Qi Ying Koo; Asif M Khan; KEUN JUNG; Shweta Ramdas; Olivo Miotto; Tin Wee Tan; Vladimir Brusic; Jerome Salmon; Thomas J August
Conservation and variability of West Nile virus proteins.
PloS one 2009;4(4):e5352.
2008: Vladimir Brusic; Shoba Ranganathan
Critical technologies for bioinformatics.
Briefings in bioinformatics 2008;9(4):261-2.
2008: Songsak Tongchusak; Vladimir Brusic; Sansanee C Chaiyaroj
Promiscuous T cell epitope prediction of Candida albicans secretory aspartyl protienase family of proteins.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2008;8(4):467-73.
2008: Ovidiu Marina; Melinda A Biernacki; Vladimir Brusic; Catherine J Wu
A concentration-dependent analysis method for high density protein microarrays.
Journal of proteome research 2008;7(5):2059-68.
2008: Songsak Tongchusak; Chanvit Leelayuwat; Vladimir Brusic; Sansanee C Chaiyaroj
In silico prediction and immunological validation of common HLA-DRB1-restricted T cell epitopes of Candida albicans secretory aspartyl proteinase 2.
Microbiology and immunology 2008;52(4):231-42.
2008: Honghuang Lin; Guang Lan Zhang; Songsak Tongchusak; Ellis L Reinherz; Vladimir Brusic
Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.
BMC bioinformatics 2008;9 Suppl 12():S22.
2008: Xiaohong Cao; Karen B Maloney; Vladimir Brusic
Data mining of cancer vaccine trials: a bird's-eye view.
Immunome research 2008;4():7.
2008: Asif M Khan; Olivo Miotto; Eduardo J M Nascimento; Kellathur N Srinivasan; AT Heiny; Guang Lan Zhang; Ernesto Marques; Tin Wee Tan; Vladimir Brusic; Jerome Salmon; Thomas J August
Conservation and variability of dengue virus proteins: implications for vaccine design.
PLoS neglected tropical diseases 2008;2(8):e272.
2008: Nicholas K Brown; Daniel J McCormick; Vladimir Brusic; Chella S David; Yi chi M Kong
A novel H2A-E+ transgenic model susceptible to human but not mouse thyroglobulin-induced autoimmune thyroiditis: identification of mouse pathogenic epitopes.
Cellular immunology 2008;251(1):1-7.
2008: Honghuang Lin; Surajit Ray; Songsak Tongchusak; Ellis L Reinherz; Vladimir Brusic
Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research.
BMC immunology 2008;9():8.
2008: Olivo Miotto; Tin Wee Tan; Vladimir Brusic
Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses.
BMC bioinformatics 2008;9 Suppl 1():S7.
2008: Guang Lan Zhang; Asif M Khan; Kellathur N Srinivasan; At Heiny; Kx Lee; Chee Keong Kwoh; Thomas J August; Vladimir Brusic
Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes.
BMC bioinformatics 2008;9 Suppl 1():S19.
2008: Olivo Miotto; At Heiny; Tin Wee Tan; Thomas J August; Vladimir Brusic
Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis.
BMC bioinformatics 2008;9 Suppl 1():S18.
2008: Zhen-Yu J Sun; Kyoung Joon Oh; Mikyung Kim; J Yu; Vladimir Brusic; Likai Song; Zhisong Qiao; Jia-huai Wang; Gerhard Wagner; Ellis L Reinherz
HIV-1 broadly neutralizing antibody extracts its epitope from a kinked gp41 ectodomain region on the viral membrane.
Immunity 2008;28(1):52-63.
2007: Guang Lan Zhang; Ivana Bozic; Chee Keong Kwoh; Thomas J August; Vladimir Brusic
Prediction of supertype-specific HLA class I binding peptides using support vector machines.
Journal of immunological methods 2007;320(1-2):143-54.
2007: Vladimir Brusic
The growth of bioinformatics.
Briefings in bioinformatics 2007;8(2):69-70.
2007: Vladimir Brusic; Ovidiu Marina; Catherine J Wu; Ellis L Reinherz
Proteome informatics for cancer research: from molecules to clinic.
Proteomics 2007;7(6):976-91.
2007: Menaka Rajapakse; Bertil Schmidt; Lin Feng; Vladimir Brusic
Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms.
BMC bioinformatics 2007;8():459.
2007: AT Heiny; Olivo Miotto; Kellathur N Srinivasan; Asif M Khan; Guang Lan Zhang; Vladimir Brusic; Tin Wee Tan; Thomas J August
Evolutionarily conserved protein sequences of influenza a viruses, avian and human, as vaccine targets.
PloS one 2007;2(11):e1190.
2007: Joo Chuan Tong; Zong Hong Zhang; Thomas J August; Vladimir Brusic; Tin Wee Tan; Shoba Ranganathan
In silico characterization of immunogenic epitopes presented by HLA-Cw*0401.
Immunome research 2007;3():7.
2006: András Falus; Vladimir Brusic
Highlights of international conference of immunogenomics and immunomics, October 8-12, 2006 Budapest, Hungary.
Cellular immunology 2006;244(2):65-76.
2006: Zong Hong Zhang; Stephanie C C Tan; Judice L Y Koh; András Falus; Vladimir Brusic
ALLERDB database and integrated bioinformatic tools for assessment of allergenicity and allergic cross-reactivity.
Cellular immunology 2006;244(2):90-6.
2006: Asif M Khan; Olivo Miotto; AT Heiny; Jerome Salmon; Kellathur N Srinivasan; Eduardo J M Nascimento; Ernesto Marques; Vladimir Brusic; Tin Wee Tan; Thomas J August
A systematic bioinformatics approach for selection of epitope-based vaccine targets.
Cellular immunology 2006;244(2):141-7.
2006: Menaka Rajapakse; Guang Lan Zhang; Kellathur N Srinivasan; Bertil Schmidt; Nikolai Petrovsky; Vladimir Brusic
PREDNOD, a prediction server for peptide binding to the H-2g7 haplotype of the non-obese diabetic mouse.
Autoimmunity 2006;39(8):645-50.
2006: Nikolai Petrovsky; Vladimir Brusic
Bioinformatics for study of autoimmunity.
Autoimmunity 2006;39(8):635-43.
2006: Paul Thiam Joo Tan; Shoba Ranganathan; Vladimir Brusic
Deduction of functional peptide motifs in scorpion toxins.
Journal of peptide science : an official publication of the European Peptide Society 2006;12(6):420-7.
2006: Joo Chuan Tong; Guang Lan Zhang; Tin Wee Tan; Thomas J August; Vladimir Brusic; Shoba Ranganathan
Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides.
Bioinformatics (Oxford, England) 2006;22(10):1232-8.
2006: Vandana Gupta; Tani M Tabiin; Kai Sun; Ananth Chandrasekaran; Azlinda Anwar; Kun Yang; Priya R Chikhlikar; Jerome Salmon; Vladimir Brusic; Ernesto Marques; SRINIVASAN KELLATHUR; Thomas J August
SARS coronavirus nucleocapsid immunodominant T-cell epitope cluster is common to both exogenous recombinant and endogenous DNA-encoded immunogens.
Virology 2006;347(1):127-39.
2006: Paul Thiam Joo Tan; Anitha Veeramani; Kellathur N Srinivasan; Shoba Ranganathan; Vladimir Brusic
SCORPION2: a database for structure-function analysis of scorpion toxins.
Toxicon : official journal of the International Society on Toxinology 2006;47(3):356-63.
2006: Asif M Khan; AT Heiny; Kenneth X Lee; Kellathur N Srinivasan; Tin Wee Tan; Thomas J August; Vladimir Brusic
Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus.
BMC bioinformatics 2006;7 Suppl 5():S4.
2006: Guang Lan Zhang; Nikolai Petrovsky; Chee Keong Kwoh; Thomas J August; Vladimir Brusic
PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing.
Immunome research 2006;2():3.
2006: Vladimir Brusic
Information management for the study of allergies.
Inflammation & allergy drug targets 2006;5(1):35-42.
2005: Guang Lan Zhang; Asif M Khan; Kellathur N Srinivasan; Thomas J August; Vladimir Brusic
Neural models for predicting viral vaccine targets.
Journal of bioinformatics and computational biology 2005;3(5):1207-25.
2005: Paul Thiam Joo Tan; Kellathur N Srinivasan; Seng Hong Seah; Judice L Y Koh; Tin Wee Tan; Shoba Ranganathan; Vladimir Brusic
Accurate prediction of scorpion toxin functional properties from primary structures.
Journal of molecular graphics & modelling 2005;24(1):17-24.
2005: Guang Lan Zhang; Kellathur N Srinivasan; Anitha Veeramani; Thomas J August; Vladimir Brusic
PREDBALB/c: a system for the prediction of peptide binding to H2d molecules, a haplotype of the BALB/c mouse.
Nucleic acids research 2005;33(Web Server issue):W180-3.
2005: Guang Lan Zhang; Asif M Khan; Kellathur N Srinivasan; Thomas J August; Vladimir Brusic
MULTIPRED: a computational system for prediction of promiscuous HLA binding peptides.
Nucleic acids research 2005;33(Web Server issue):W172-9.
2005: Vladimir Brusic; Thomas J August; Nikolai Petrovsky
Information technologies for vaccine research.
Expert review of vaccines 2005;4(3):407-17.
2005: Vladimir Brusic; Nikolai Petrovsky
Immunoinformatics and its relevance to understanding human immune disease.
Expert review of clinical immunology 2005;1(1):145-57.
2005: Maja Mandic; Florence A Castelli; Bratislav Janjic; Christine Almunia; Pedro Andrade; Daniel Gillet; Vladimir Brusic; John M Kirkwood; Bernard Maillere; Hassane M Zarour
One NY-ESO-1-derived epitope that promiscuously binds to multiple HLA-DR and HLA-DP4 molecules and stimulates autologous CD4+ T cells from patients with NY-ESO-1-expressing melanoma.
Journal of immunology (Baltimore, Md. : 1950) 2005;174(3):1751-9.
2005: Olivo Miotto; Tin Wee Tan; Vladimir Brusic
Supporting the curation of biological databases with reusable text mining.
Genome informatics. International Conference on Genome Informatics 2005;16(2):32-44.
2005: Christian Schönbach; Judice L Y Koh; Darren R Flower; Vladimir Brusic
An update on the functional molecular immunology (FIMM) database.
Applied bioinformatics 2005;4(1):25-31.
2004: Joyce Phui Yee Siew; Asif M Khan; Paul Thiam Joo Tan; Judice L Y Koh; Seng Hong Seah; Chuay-Yeng Koo; Siaw Ching Chai; Arunmozhiarasi Armugam; Vladimir Brusic; Kandiah Jeyaseelan
Systematic analysis of snake neurotoxins' functional classification using a data warehousing approach.
Bioinformatics (Oxford, England) 2004;20(18):3466-80.
2004: Vladimir Brusic; Vladimir Bajic; Nikolai Petrovsky
Computational methods for prediction of T-cell epitopes--a framework for modelling, testing, and applications.
Methods (San Diego, Calif.) 2004;34(4):436-43.
2004: Nikolai Petrovsky; Vladimir Brusic
Virtual models of the HLA class I antigen processing pathway.
Methods (San Diego, Calif.) 2004;34(4):429-35.
2004: Vladimir Brusic; Thomas J August
The changing field of vaccine development in the genomics era.
Pharmacogenomics 2004;5(6):597-600.
2004: Kellathur N Srinivasan; Guang Lan Zhang; Asif M Khan; Thomas J August; Vladimir Brusic
Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i297-302.
2004: Johann Lenffer; Paulo Lai; Wafaa El Mejaber; Asif M Khan; Judice L Y Koh; Paul Thiam Joo Tan; Seng Hong Seah; Vladimir Brusic
CysView: protein classification based on cysteine pairing patterns.
Nucleic acids research 2004;32(Web Server issue):W350-5.
2004: Jeffrey C Flynn; Daniel J McCormick; Vladimir Brusic; Qiang Wan; John C Panos; Alvaro A Giraldo; Chella S David; Yi chi M Kong
Pathogenic human thyroglobulin peptides in HLA-DR3 transgenic mouse model of autoimmune thyroiditis.
Cellular immunology 2004;229(2):79-85.
2004: Diego G Silva; Christian Schönbach; Vladimir Brusic; Luis Socha; Takeshi Nagashima; Nikolai Petrovsky
Identification of "pathologs" (disease-related genes) from the RIKEN mouse cDNA dataset using human curation plus FACTS, a new biological information extraction system.
BMC genomics 2004;5(1):28.
2004: Vladimir Brusic; Yoshie Takagi; Haruki Nakamura
[Bioinformatics in Asia].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(1):74-83.
2004: M Brahmachary; S P T Krishnan; Judice L Y Koh; Asif M Khan; Seng Hong Seah; Tin Wee Tan; Vladimir Brusic; Vladimir Bajic
ANTIMIC: a database of antimicrobial sequences.
Nucleic acids research 2004;32(Database issue):D586-9.
2003: Vladimir Brusic; Rekha S Pillai; Diego G Silva; Nikolai Petrovsky; Christian Schönbach
Cytokine-related genes identified from the RIKEN full-length mouse cDNA data set.
Genome research 2003;13(6B):1307-17.
2003: Vladimir Brusic; Nikolai Petrovsky
Bioinformatics for characterisation of allergens, allergenicity and allergic crossreactivity.
Trends in immunology 2003;24(5):225-8.
2003: Vladimir Brusic
From immunoinformatics to immunomics.
Journal of bioinformatics and computational biology 2003;1(1):179-81.
2003: Paul Thiam Joo Tan; Asif M Khan; Vladimir Brusic
Bioinformatics for venom and toxin sciences.
Briefings in bioinformatics 2003;4(1):53-62.
2003: Tomohide Tatsumi; Lisa S Kierstead; Elena Ranieri; Loreto Gesualdo; Francesco Paolo Schena; James H Finke; Ronald M Bukowski; Vladimir Brusic; John Sidney; Alessandro Sette; Theodore F Logan; Yvette L Kasamon; Craig L Slingluff; John M Kirkwood; Walter J Storkus
MAGE-6 encodes HLA-DRbeta1*0401-presented epitopes recognized by CD4+ T cells from patients with melanoma or renal cell carcinoma.
Clinical cancer research : an official journal of the American Association for Cancer Research 2003;9(3):947-54.
2003: Vladimir Bajic; Seng Hong Seah; Allen Chong; S P T Krishnan; Judice L Y Koh; Vladimir Brusic
Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates.
Journal of molecular graphics & modelling 2003;21(5):323-32.
2003: Nikolai Petrovsky; Diego Silva; Vladimir Brusic
The future for computational modelling and prediction systems in clinical immunology.
Novartis Foundation symposium 2003;254():23-32; discussion 33-42, 98-101, 250-2.
2003: Vladimir Brusic; Nikolai Petrovsky
Immunoinformatics--the new kid in town.
Novartis Foundation symposium 2003;254():3-13; discussion 13-22, 98-101, 250-2.
2003: Vladimir Bajic; Vladimir Brusic
Computational detection of vertebrate RNA polymerase II promoters.
Methods in enzymology 2003;370():237-50.
2003: Nikolai Petrovsky; Christian Schönbach; Vladimir Brusic
Bioinformatic strategies for better understanding of immune function.
In silico biology 2003;3(4):411-6.
2002: Christian Schönbach; Yu Kun; Vladimir Brusic
Large-scale computational identification of HIV T-cell epitopes.
Immunology and cell biology 2002;80(3):300-6.
2002: Vladimir Brusic; Nikolai Petrovsky; Guanglan Zhang; Vladimir Bajic
Prediction of promiscuous peptides that bind HLA class I molecules.
Immunology and cell biology 2002;80(3):280-5.
2002: Nikolai Petrovsky; Vladimir Brusic
Computational immunology: The coming of age.
Immunology and cell biology 2002;80(3):248-54.
2002: Kun Yu; Nikolai Petrovsky; Christian Schönbach; Judice Y L Koh; Vladimir Brusic
Methods for prediction of peptide binding to MHC molecules: a comparative study.
Molecular medicine (Cambridge, Mass.) 2002;8(3):137-48.
2002: Hideki Noguchi; Ryuji Kato; Taizo Hanai; Yukari Matsubara; Hiroyuki Honda; Vladimir Brusic; Takeshi Kobayashi
Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.
Journal of bioscience and bioengineering 2002;94(3):264-70.
2002: Vladimir Bajic; Seng Hong Seah; Allen Chong; Guanglan Zhang; Judice L Y Koh; Vladimir Brusic
Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters.
Bioinformatics (Oxford, England) 2002;18(1):198-9.
2002: Hassane M Zarour; Bernard Maillere; Vladimir Brusic; Kara Coval; Eileen Williams; Sandra Pouvelle-Moratille; Florence A Castelli; Stephanie Land; Jaafar Bennouna; Theodore Logan; John M Kirkwood
NY-ESO-1 119-143 is a promiscuous major histocompatibility complex class II T-helper epitope recognized by Th1- and Th2-type tumor-reactive CD4+ T cells.
Cancer research 2002;62(1):213-8.
2002: Christian Schönbach; Judice L Y Koh; Darren R Flower; Limsoon Wong; Vladimir Brusic
FIMM, a database of functional molecular immunology: update 2002.
Nucleic acids research 2002;30(1):226-9.
2002: Kellathur N Srinivasan; Ponnampalam Gopalakrishnakone; Paul Thiam Joo Tan; K C Chew; Betty Cheng; R Manjunatha Kini; Judice L Y Koh; Seng Hong Seah; Vladimir Brusic
SCORPION, a molecular database of scorpion toxins.
Toxicon : official journal of the International Society on Toxinology 2002;40(1):23-31.
2001: Lisa S Kierstead; Elena Ranieri; Walter Olson; Vladimir Brusic; John Sidney; Alessandro Sette; Yvette L Kasamon; Craig L Slingluff; John M Kirkwood; Walter J Storkus
gp100/pmel17 and tyrosinase encode multiple epitopes recognized by Th1-type CD4+T cells.
British journal of cancer 2001;85(11):1738-45.
2001: Y Yan; John C Panos; Daniel J McCormick; Qiang Wan; Alvaro A Giraldo; Vladimir Brusic; Chella S David; Yi chi M Kong
Characterization of a novel H2A(-)E+ transgenic model susceptible to heterologous but not self thyroglobulin in autoimmune thyroiditis: thyroiditis transfer with Vbeta8+ T cells.
Cellular immunology 2001;212(1):63-70.
2001: Vladimir Brusic; K Bucci; Christian Schönbach; Nikolai Petrovsky; J Zeleznikow; James W Kazura
Efficient discovery of immune response targets by cyclical refinement of QSAR models of peptide binding.
Journal of molecular graphics & modelling 2001;19(5):405-11, 467.
2000: Hassane M Zarour; Walter J Storkus; Vladimir Brusic; E Williams; John M Kirkwood
NY-ESO-1 encodes DRB1*0401-restricted epitopes recognized by melanoma-reactive CD4+ T cells.
Cancer research 2000;60(17):4946-52.
2000: Christian Schönbach; P Kowalski-Saunders; Vladimir Brusic
Data warehousing in molecular biology.
Briefings in bioinformatics 2000;1(2):190-8.
2000: Vladimir Brusic; J Zeleznikow; Nikolai Petrovsky
Molecular immunology databases and data repositories.
Journal of immunological methods 2000;238(1-2):17-28.
2000: Hassane M Zarour; John M Kirkwood; Lisa S Kierstead; W Herr; Vladimir Brusic; Craig L Slingluff; John Sidney; Alessandro Sette; Walter J Storkus
Melan-A/MART-1(51-73) represents an immunogenic HLA-DR4-restricted epitope recognized by melanoma-reactive CD4(+) T cells.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(1):400-5.
2000: Christian Schönbach; Judice L Y Koh; X Sheng; Limsoon Wong; Vladimir Brusic
FIMM, a database of functional molecular immunology.
Nucleic acids research 2000;28(1):222-4.
1999: Vladimir Brusic; P van Endert; J Zeleznikow; S Daniel; J Hammer; Nikolai Petrovsky
A neural network model approach to the study of human TAP transporter.
In silico biology 1999;1(2):109-21.
1998: Margo Honeyman; Vladimir Brusic; Natalie L Stone; Leonard C Harrison
Neural network-based prediction of candidate T-cell epitopes.
Nature biotechnology 1998;16(10):966-9.
1998: S Daniel; Vladimir Brusic; Sophie Caillat-Zucman; Nikolai Petrovsky; L Harrison; D Riganelli; Francesco Sinigaglia; F Gallazzi; Juergen Hammer; Peter van Endert
Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules.
Journal of immunology (Baltimore, Md. : 1950) 1998;161(2):617-24.
1998: Vladimir Brusic; GB Rudy; G Honeyman; J Hammer; L Harrison
Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.
Bioinformatics (Oxford, England) 1998;14(2):121-30.
1998: Vladimir Brusic; GB Rudy; L C Harrison
MHCPEP, a database of MHC-binding peptides: update 1997.
Nucleic acids research 1998;26(1):368-71.
1997: Margo Honeyman; Vladimir Brusic; Leonard C Harrison
Strategies for identifying and predicting islet autoantigen T-cell epitopes in insulin-dependent diabetes mellitus.
Annals of medicine 1997;29(5):401-4.
1997: K Nakagawa; Vladimir Brusic; G McColl; Leonard C Harrison
Direct evidence for the expression of multiple endogenous retroviruses in the synovial compartment in rheumatoid arthritis.
Arthritis and rheumatism 1997;40(4):627-38.
1997: Leonard C Harrison; Margo Honeyman; Sylvie Trembleau; Silvia Gregori; F Gallazzi; Petra Augstein; Vladimir Brusic; Juergen Hammer; Luciano Adorini
A peptide-binding motif for I-A(g7), the class II major histocompatibility complex (MHC) molecule of NOD and Biozzi AB/H mice.
The Journal of experimental medicine 1997;185(6):1013-21.
1997: Vladimir Brusic; Christian Schönbach; M Takiguchi; V Ciesielski; L C Harrison
Application of genetic search in derivation of matrix models of peptide binding to MHC molecules.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():75-83.
1997: Vladimir Brusic; GB Rudy; A P Kyne; L C Harrison
MHCPEP, a database of MHC-binding peptides: update 1996.
Nucleic acids research 1997;25(1):269-71.
1996: Vladimir Brusic; GB Rudy; A P Kyne; L C Harrison
MHCPEP--a database of MHC-binding peptides: update 1995.
Nucleic acids research 1996;24(1):242-4.
1995: GB Rudy; N Stone; Leonard C Harrison; P G Colman; P McNair; Vladimir Brusic; M B French; Margo Honeyman; B Tait; Andrew M Lew
Similar peptides from two beta cell autoantigens, proinsulin and glutamic acid decarboxylase, stimulate T cells of individuals at risk for insulin-dependent diabetes.
Molecular medicine (Cambridge, Mass.) 1995;1(6):625-33.
1995: GB Rudy; Vladimir Brusic; Leonard C Harrison; Andrew M Lew
Sequence similarity between beta-cell autoantigens.
Immunology today 1995;16(8):406-7.
1994: Vladimir Brusic; GB Rudy; L C Harrison
MHCPEP: a database of MHC-binding peptides.
Nucleic acids research 1994;22(17):3663-5.