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HUI ZHANG

Research Profile

Occupations

Proteomics

Procedures

Chemicals & Drugs

Phenomena

Glycosylation

Genes & Molecular Sequences

Amino Acid Sequences

Concepts & Ideas

Co-author Network

Publications

TOP 3
Punit Shah; Shisheng Sun; Shuang Yang; Kevin J Yarema; Paul Aiyetan; HUI ZHANG
Mass spectrometric analysis of sialylated glycans with use of solid-phase labeling of sialic acids.
Yuan Tian; HUI ZHANG
Characterization of disease-associated N-linked glycoproteins.
Mark A Marzinke; Ie-Ming Shih; Daniel W Chan; Li Chen; Caitlin H Choi; HUI ZHANG
Proteomic analysis of temporally stimulated ovarian cancer cells for biomarker discovery.

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All Publications

2013: Punit Shah; Shisheng Sun; Shuang Yang; Kevin J Yarema; Paul Aiyetan; HUI ZHANG
Mass spectrometric analysis of sialylated glycans with use of solid-phase labeling of sialic acids.
Analytical chemistry 2013;85(7):3606-13.
2013: Yuan Tian; HUI ZHANG
Characterization of disease-associated N-linked glycoproteins.
Proteomics 2013;13(3-4):504-11.
2013: Mark A Marzinke; Ie-Ming Shih; Daniel W Chan; Li Chen; Caitlin H Choi; HUI ZHANG
Proteomic analysis of temporally stimulated ovarian cancer cells for biomarker discovery.
Molecular & cellular proteomics : MCP 2013;12(2):356-68.
2013: QING KAY LI; Frederic B Askin; Daniel W Chan; Edward Gabrielson; HUI ZHANG
Glycoproteomics using fluid-based specimens in the discovery of lung cancer protein biomarkers: promise and challenge.
Proteomics. Clinical applications 2013;7(1-2):55-69.
2013: Danni Li; HUI ZHANG; Jing Chen; Hanching Chiu; Daniel W Chan
Integrated analyses of proteins and their glycans in a magnetic bead-based multiplex assay format.
Clinical chemistry 2013;59(1):315-24.
2012: Shuang Yang; HUI ZHANG
Solid-phase glycan isolation for glycomics analysis.
Proteomics. Clinical applications 2012;6(11-12):596-608.
2012: Deniz Baycin-Hizal; Raghothama Chaerkady; Lily Chen; Joe Colao; Robert N Cole; Elena Jacobson; Sharon S Krag; Amit Kumar; Nathan E Lewis; Harish Nagarajan; Robert N O'Meally; Bernhard O Palsson; Vishaldeep Sarkaria; David L Tabb; Yuan Tian; Daniel Wolozny; HUI ZHANG; Michael J Betenbaugh
Proteomic analysis of Chinese hamster ovary cells.
Journal of proteome research 2012;11(11):5265-76.
2012: Shadi Toghi Eshghi; Xingde Li; HUI ZHANG
Targeted analyte detection by standard addition improves detection limits in matrix-assisted laser desorption/ionization mass spectrometry.
Analytical chemistry 2012;84(18):7626-32.
2012: Amol Prakash; Taha Rezai; Paul Russo; David A Sarracino; Christopher R Smith; Yuan Tian; HUI ZHANG; Alessandra Luchini; Randall Nelson; Paul E Oran; Emanuel Petricoin; Michael Athanas; Ihor Batruch; Daniel W Chan; Eleftherios P Diamandis; Andrei Drabovich; Claudia Fredolini; Bryan Krastins; Vathany Kulasingam; Yan Li; Lance Liotta; Mary F Lopez
Interlaboratory reproducibility of selective reaction monitoring assays using multiple upfront analyte enrichment strategies.
Journal of proteome research 2012;11(8):3986-95.
2012: Ruben T Almaraz; Rahul Bhattarcharya; Li Chen; Shih-Hsun Chen; Matthew R Dallas; Konstantinos Konstantopoulos; Elaine Tan; Yuan Tian; HUI ZHANG; Zhen Zhang; Kevin J Yarema
Metabolic flux increases glycoprotein sialylation: implications for cell adhesion and cancer metastasis.
Molecular & cellular proteomics : MCP 2012;11(7):M112.017558.
2012: QING KAY LI; Edward Gabrielson; HUI ZHANG
Application of glycoproteomics for the discovery of biomarkers in lung cancer.
Proteomics. Clinical applications 2012;6(5-6):244-56.
2012: Yuan Tian; Francisco J Esteva; Jin Song; HUI ZHANG
Altered expression of sialylated glycoproteins in breast cancer using hydrazide chemistry and mass spectrometry.
Molecular & cellular proteomics : MCP 2012;11(6):M111.011403.
2012: Shuang J Yang; HUI ZHANG
Glycan analysis by reversible reaction to hydrazide beads and mass spectrometry.
Analytical chemistry 2012;84(5):2232-8.
2011: Yuan Tian; Zhihao Yao; Richard B S Roden; HUI ZHANG
Identification of glycoproteins associated with different histological subtypes of ovarian tumors using quantitative glycoproteomics.
Proteomics 2011;11(24):4677-87.
2011: Yan Li; Alvin Y Liu; Sheng-Ce Tao; G Steven Bova; Daniel W Chan; Heng Zhu; HUI ZHANG
Detection and verification of glycosylation patterns of glycoproteins from clinical specimens using lectin microarrays and lectin-based immunosorbent assays.
Analytical chemistry 2011;83(22):8509-16.
2011: Seok-Won Hyung; Hee-Jung Jung; Kyung-Min Lee; Min Young Lee; Sang-Won Lee; Hyeong-Gon Moon; Jong-Moon Park; Byunghee Shin; Jong-Han Yu; Myeong-Hee Yu; HUI ZHANG; Ruedi Aebersold; Wonshik Han; Daehee Hwang; Dong-Young Noh
A serum protein profile predictive of the resistance to neoadjuvant chemotherapy in advanced breast cancers.
Molecular & cellular proteomics : MCP 2011;10(10):M111.011023.
2011: Yuan Tian; G Steven Bova; HUI ZHANG
Quantitative glycoproteomic analysis of optimal cutting temperature-embedded frozen tissues identifying glycoproteins associated with aggressive prostate cancer.
Analytical chemistry 2011;83(18):7013-9.
2011: Terry Farrah; Jonathan E Katz; Lin Biao; Parag Mallick; Johan Malmström; Robert L Moritz; Gilbert S Omenn; Reto Ossola; Zhi Sun; Julian D Watts; HUI ZHANG; Julie A Bletz; David S Campbell; Eric Deutsch; Ruedi Aebersold
A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas.
Molecular & cellular proteomics : MCP 2011;10(9):M110.006353.
2011: Deniz Baycin-Hizal; Michael Betenbaugh; Dean Clark; Elena Jacobson; Russell Jampol; Karen Palter; Yuan Tian; Alexander Wu; Ilhan Akan; HUI ZHANG
GlycoFish: a database of zebrafish N-linked glycoproteins identified using SPEG method coupled with LC/MS.
Analytical chemistry 2011;83(13):5296-303.
2011: Deniz Baycin-Hizal; Yuan Tian; Ilhan Akan; Elena Jacobson; Dean Clark; Jeffrey Chu; Karen Palter; HUI ZHANG; Michael J Betenbaugh
GlycoFly: a database of Drosophila N-linked glycoproteins identified using SPEG--MS techniques.
Journal of proteome research 2011;10(6):2777-84.
2011: Danni L Meany; Laszlo Hackler; HUI ZHANG; Daniel W Chan
Tyramide signal amplification for antibody-overlay lectin microarray: a strategy to improve the sensitivity of targeted glycan profiling.
Journal of proteome research 2011;10(3):1425-31.
2011: Yan Li; HUI ZHANG
High-throughput analysis of glycoproteins from plasma.
Methods in molecular biology (Clifton, N.J.) 2011;728():125-33.
2011: Yan Li; Yuan Tian; Taha Rezai; Amol Prakash; Mary F Lopez; Daniel W Chan; HUI ZHANG
Simultaneous analysis of glycosylated and sialylated prostate-specific antigen revealing differential distribution of glycosylated prostate-specific antigen isoforms in prostate cancer tissues.
Analytical chemistry 2011;83(1):240-5.
2010: A Prakash; T Rezai; Bryan Krastins; David A Sarracino; M Athanas; P Russo; M M Ross; HUI ZHANG; Y Tian; Vathany Kulasingam; Andrei Drabovich; Deborah Gelsi; I Batruch; L Liotta; E Petricoin; Eleftherios P Diamandis; Daniel W Chan; M F Lopez
Platform for establishing interlaboratory reproducibility of selected reaction monitoring-based mass spectrometry peptide assays.
Journal of proteome research 2010;9(12):6678-88.
2010: Yuan Tian; Karen S Kelly-Spratt; Christopher J Kemp; HUI ZHANG
Mapping tissue-specific expression of extracellular proteins using systematic glycoproteomic analysis of different mouse tissues.
Journal of proteome research 2010;9(11):5837-47.
2010: Yuan Tian; HUI ZHANG
Isolation of proteins by heat-induced extraction from formalin-fixed, paraffin-embedded tissue and preparation of tryptic peptides for mass spectrometric analysis.
Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.] 2010;Chapter 10():Unit 10.26.1-7.
2010: Yuan Tian; HUI ZHANG
Glycoproteomics and clinical applications.
Proteomics. Clinical applications 2010;4(2):124-32.
2010: Stefanie M Ueda; Kai Lee Yap; Ben Davidson; Yuan Tian; Vivek Murthy; Tian-Li Wang; Kala Visvanathan; Francis P Kuhajda; Robert E Bristow; HUI ZHANG; Ie-Ming Shih
Expression of Fatty Acid Synthase Depends on NAC1 and Is Associated with Recurrent Ovarian Serous Carcinomas.
Journal of oncology 2010;2010():285191.
2009: Yuan Tian; Zhi Xie; Zhen Zhang; Daniel W Chan; Natini Jinawath; Matthew T Olson; Ie-Ming Shih; Xiaer Sun; Aik Choon Tan; HUI ZHANG
Quantitative proteomic analysis of ovarian cancer cells identified mitochondrial proteins associated with Paclitaxel resistance.
Proteomics. Clinical applications 2009;3(11):1288-95.
2009: Yuan Tian; Kay Gurley; Danni L Meany; Christopher J Kemp; HUI ZHANG
N-linked glycoproteomic analysis of formalin-fixed and paraffin-embedded tissues.
Journal of proteome research 2009;8(4):1657-62.
2009: Danni L Meany; Zhen Zhang; Lori J Sokoll; HUI ZHANG; Daniel W Chan
Glycoproteomics for prostate cancer detection: changes in serum PSA glycosylation patterns.
Journal of proteome research 2009;8(2):613-9.
2009: Bao Lige; Bamini Jayabalasingham; HUI ZHANG; Marc Pypaert; Isabelle Coppens
Role of an ancestral d-bifunctional protein containing two sterol-carrier protein-2 domains in lipid uptake and trafficking in Toxoplasma.
Molecular biology of the cell 2009;20(2):658-72.
2008: Daehee Hwang; Ning Zhang; Hookeun Lee; Eugene Yi; HUI ZHANG; Inyoul Y Lee; Leroy Hood; Ruedi Aebersold
MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis.
Bioinformatics (Oxford, England) 2008;24(22):2641-2.
2007: Matthew P Stokes; John Rush; Joan MacNeill; Jian Min Ren; Kam Sprott; Julie Nardone; Vicky Yang; Sean A Beausoleil; Steven P Gygi; Mark Livingstone; HUI ZHANG; Roberto D Polakiewicz; Michael J Comb
Profiling of UV-induced ATM/ATR signaling pathways.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(50):19855-60.
2007: HUI ZHANG; Daniel W Chan
Cancer biomarker discovery in plasma using a tissue-targeted proteomic approach.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2007;16(10):1915-7.
2007: Yong Zhou; Ruedi Aebersold; HUI ZHANG
Isolation of N-linked glycopeptides from plasma.
Analytical chemistry 2007;79(15):5826-37.
2007: HUI ZHANG
Glycoproteomics using chemical immobilization.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2007;Chapter 24():Unit 24.3.
2007: Jingyi Chen; Danling Wang; Jiefeng Xi; Leslie Au; Andrew R Siekkinen; Addie Warsen; Zhi-Yuan Li; HUI ZHANG; Younan Xia; Xingde Li
Immuno gold nanocages with tailored optical properties for targeted photothermal destruction of cancer cells.
Nano letters 2007;7(5):1318-22.
2007: Pei Wang; Hua Tang; Matthew Fitzgibbon; Martin McIntosh; Marc Coram; HUI ZHANG; Eugene Yi; Ruedi Aebersold
A statistical method for chromatographic alignment of LC-MS data.
Biostatistics (Oxford, England) 2007;8(2):357-67.
2007: Jeffrey Whiteaker; Heidi Zhang; Jimmy K Eng; Ruihua Fang; Brian D Piening; Li-Chia Feng; Travis D Lorentzen; Regine M Schoenherr; John F Keane; Ted Holzman; Matthew Fitzgibbon; ChenWei Lin; HUI ZHANG; Kelly Cooke; Tao Liu; David G Camp; Leigh Anderson; Julian Watts; Richard D Smith; Martin W McIntosh; Amanda Paulovich
Head-to-head comparison of serum fractionation techniques.
Journal of proteome research 2007;6(2):828-36.
2007: Yuan Tian; Yong Zhou; Sarah Elliott; Ruedi Aebersold; HUI ZHANG
Solid-phase extraction of N-linked glycopeptides.
Nature protocols 2007;2(2):334-9.
2007: HUI ZHANG; Alvin Y Liu; Paul Loriaux; Bernd Wollscheid; Yong Zhou; Julian D Watts; Ruedi Aebersold
Mass spectrometric detection of tissue proteins in plasma.
Molecular & cellular proteomics : MCP 2007;6(1):64-71.
2006: Isabelle Coppens; Joe Dan Dunn; Julia D Romano; Marc Pypaert; HUI ZHANG; John C Boothroyd; Keith A Joiner
Toxoplasma gondii sequesters lysosomes from mammalian hosts in the vacuolar space.
Cell 2006;125(2):261-74.
2006: HUI ZHANG
The Plasma Proteome: High Abundance versus Low Abundance. January 10-11, 2006, San Diego, CA, USA.
Expert review of proteomics 2006;3(2):175-8.
2006: HUI ZHANG; Paul Loriaux; Jimmy Eng; David Campbell; Andrew Keller; Pat Moss; Richard Bonneau; Ning Zhang; Yong Zhou; Bernd Wollscheid; Kelly Cooke; Eugene C Yi; Hookeun Lee; Elaine Peskind; Jing Zhang; Richard D Smith; Ruedi Aebersold
UniPep--a database for human N-linked glycosites: a resource for biomarker discovery.
Genome biology 2006;7(8):R73.
2006: HUI ZHANG; Ruedi Aebersold
Isolation of glycoproteins and identification of their N-linked glycosylation sites.
Methods in molecular biology (Clifton, N.J.) 2006;328():177-85.
2005: Xiao-jun Li; Eugene C Yi; Christopher J Kemp; HUI ZHANG; Ruedi Aebersold
A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry.
Molecular & cellular proteomics : MCP 2005;4(9):1328-40.
2005: Eric Deutsch; Jimmy K Eng; HUI ZHANG; Nichole L King; Alexey I Nesvizhskii; Lin Biao; Hookeun Lee; Eugene C Yi; Reto Ossola; Ruedi Aebersold
Human Plasma PeptideAtlas.
Proteomics 2005;5(13):3497-500.
2005: Jingyi Chen; Fusayo Saeki; Benjamin Wiley; Hu Cang; Michael J Cobb; Zhi-Yuan Li; Leslie Au; HUI ZHANG; Michael B Kimmey; Xingde Li; Younan Xia
Gold nanocages: bioconjugation and their potential use as optical imaging contrast agents.
Nano letters 2005;5(3):473-7.
2005: Sheng Pan; HUI ZHANG; John Rush; Jimmy Eng; Ning Zhang; Dale Patterson; Michael J Comb; Ruedi Aebersold
High throughput proteome screening for biomarker detection.
Molecular & cellular proteomics : MCP 2005;4(2):182-90.
2005: HUI ZHANG; Eugene C Yi; Xiao-jun Li; Parag Mallick; Karen S Kelly-Spratt; Christophe Masselon; David G Camp; Richard D Smith; Christopher J Kemp; Ruedi Aebersold
High throughput quantitative analysis of serum proteins using glycopeptide capture and liquid chromatography mass spectrometry.
Molecular & cellular proteomics : MCP 2005;4(2):144-55.
2005: Frank Desiere; Eric W Deutsch; Alexey I Nesvizhskii; Parag Mallick; Nichole L King; Jimmy K Eng; Alan Aderem; Rose Boyle; Erich Brunner; Samuel Donohoe; Nelson Fausto; Ernst Hafen; Lee Hood; Michael G Katze; Kathleen A Kennedy; Floyd Kregenow; Hookeun Lee; Lin Biao; Dan Martin; Jeffrey A Ranish; David J Rawlings; Lawrence E Samelson; Yuzuru Shiio; Julian D Watts; Bernd Wollscheid; Michael E Wright; Wei Yan; Lihong Yang; Eugene C Yi; HUI ZHANG; Ruedi Aebersold
Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry.
Genome biology 2005;6(1):R9.
2005: John Rush; Albrecht Moritz; Kimberly A Lee; Ailan Guo; Valerie L Goss; Erik J Spek; HUI ZHANG; Xiang-Ming Zha; Roberto D Polakiewicz; Michael J Comb
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells.
Nature biotechnology 2005;23(1):94-101.
2005: Alvin Y Liu; HUI ZHANG; Carrie M Sorensen; Deborah L Diamond
Analysis of prostate cancer by proteomics using tissue specimens.
The Journal of urology 2005;173(1):73-8.
2004: HUI ZHANG; Wei Yan; Ruedi Aebersold
Chemical probes and tandem mass spectrometry: a strategy for the quantitative analysis of proteomes and subproteomes.
Current opinion in chemical biology 2004;8(1):66-75.
2003: Xiao-Jun Li; HUI ZHANG; Jeffrey A Ranish; Ruedi Aebersold
Automated statistical analysis of protein abundance ratios from data generated by stable-isotope dilution and tandem mass spectrometry.
Analytical chemistry 2003;75(23):6648-57.
2003: HUI ZHANG; Xiao-Jun Li; Daniel B Martin; Ruedi Aebersold
Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry.
Nature biotechnology 2003;21(6):660-6.
2002: HUI ZHANG; Xiangming Zha; Yi Tan; Peter Hornbeck; Alison Mastrangelo; Dario R Alessi; Roberto D Polakiewicz; Michael J Comb
Phosphoprotein analysis using antibodies broadly reactive against phosphorylated motifs.
The Journal of biological chemistry 2002;277(42):39379-87.
2001: Zhonghe Sun; S J Cheng; HUI ZHANG; Ying Zhang
Salicylate uniquely induces a 27-kDa protein in tubercle bacillus.
FEMS microbiology letters 2001;203(2):211-6.